Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002303

Physical Location & Seq

Genomic Coordinates Reverse (-)

50897518 .. 50901617

Gene Structure 4100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00369050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1560 bp

ATGGCATCCGATCTTAATACTGAATTAGCCAAGAAGACATTTGTTTTTGGCTTAAAAGTTTGGGTATTAACAGGGATCCTTGTGGGAGTTTTTATTGTGACGATTCTACTGGTGCTATCAATTTGTCTTACTTCGCGAAAGAAATCCAGAAAGTCAAATGACATGCTTCCTCTTAACCAAATTCCAAATGTTTCAAGGGAAATTAAAGAGATTAGGGTTGATCAAGCTTCAGCAAATAACCATATGCCCCGTGGTTCTCTCCTGACCCTTAATGAGAAATTCAGTGACAGAGAATCAGAGAAAGTTTTGATTCATAAAAATGGAGATAGTAGCAGTCGATCAGGCTCATTTAATAATGCAGAGAAGGAAAATGTTGGCTCTCAATCTGGAGACGAGGGTGGTGCAGGGTCAGCTTATACACAGAAGCCATCTTCACAGCCTATAACTGCCCCTTCACCTCTTTGTGGTCTACCGGAATTCTCTCACCTTGGTTGGGGTCACTGGTTTACATTACGGGATCTTGAATTTGCAACAAACCGGTTTTCAAAAGAAAATGTCATTGGTGAGGGTGGATATGGAGTTGTTTATCGCGGTAATCTGATTAATGGAACTCCTGTGGCTGTGAAGAAGCTACTCAACAACCTGTTTGTGGTTTTTGGTCAAAACATATTTTATATTAACTCATCTCACAGAGGACAAGCAGAGAAGGAATTTAGAGTGGAAGTTGAGGCTATTGGGCATGTACGACACAAAAACTTGGTTCGTCTTCTAGGATACTGCATCGAAGGCACCCATAGGATGCTGGTTTATGAGTATGTCAACAATGGAAATCTGGAGCAATGGCTTCATGGAGCTATGCGACATCATGGATATCTAACATGGGAGGCGCGCATGAAAGTGCTTCTTGGCACTGCTAAAGCGCTGGCTTATTTGCATGAGGCCATCGAGCCAAAAGTAGTGCATCGAGATATCAAGTCAAGTAATATCTTGCTTGATGATGACTTCAATGCGAAAATATCTGACTTTGGTCTGGCAAAGATGCTAATGGCTGGAAAGAGTCATATTACGACTAGAGTTATGGGAACCTTTGGATATGTAGCCCCCGAATATGCCAATTCTGGCCTTTTAAACGAGAAGAGTGATGTTTATAGCTTTGGCGTTGTGATTTTGGAAGCAATTACTGGAAGAGACCCAGTGGACTATGGTCGGCAAGCACAAGAGGTAAATTTGGTAGACTGGCTCAAGATGATGGTTGGAAGTCGGCGTTCAGAGGAGGTGGTGGATCCAAACATTGAGACCAGACCATCGACAAGCGCCCTTAAACGAGCCCTCTTGACTGCGTTGAGGTGTGTAGATCCTGATTCTGATAAAAGACCAAAGATGGGTCAAGTTGTTCGCATGCTTGAATCTGAGGAATATCCTGTACTTCGAGAGGATCGAAGACGCCGAAAAAGTCACGCAGGCAATGTGGAGGGCGAGTCTCAGAAAGACAATTCTGATACAGATAGGAGTGACAATCCAGATACAAGGACCAACAACAGAAAGAACAATCGAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

519

Amino Acids

58.12

Weight (kDa)

8.98

Isoelectric Point (pI)

39.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	182 - 465	3.7e-44	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	184 - 468	1.3e-41	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09440 AT1G09440 AT1G56720 AT1G56720 AT1G56720 AT1G56720
fragaria_vesca	FvH4_4g21450 FvH4_4g21450 FvH4_6g08381
malus_domestica	MD04G1187400.v1.1 MD12G1201000.v1.1 MD13G1141100.v1.1 MD16G1137200.v1.1
prunus_persica	Prupe.1G106300_v2.0.a1 Prupe.1G106300_v2.0.a1 Prupe.6G306000_v2.0.a1 Prupe.6G306000_v2.0.a1 Prupe.6G306000_v2.0.a1
pyrus_communis	pycom04g16550 pycom12g18730 pycom13g12260 pycom16g12090 pycom16g12100
rosa_chinensis	RchiOBHm_Chr3g0458331 RchiOBHm_Chr4g0427381
rosa_laevigata	RLG00000007248 RLG00000025168
rosa_multiflora	Rmu_sc0003813.1_g000020 Rmu_sc0007338.1_g000007
rosa_roxburghii	Rroxscaffold_5G00369050 Rroxscaffold_6G00421160
rosa_rugosa	Rorug03G0025800 Rorug03G0025800 Rorug04G0217200 Rorug04G0217300 Rorug04G0217400 Rorug04G0217500
rosa_samantha	Rh3BG089600 Rh4AG273600 Rh4DG276600
rosa_wichuraiana	Rw3G007360 Rw4G023730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	788
AccI	GTMKAC	2 cut(s)	469, 1233
AccII	CGCG	3 cut(s)	136, 591, 889
AciI	CCGC	1 cut(s)	591
AclWI	GGATC	7 cut(s)	70, 83, 525, 1277, 1290, 1349, 1443
AcsI	RAATTY	6 cut(s)	180, 278, 476, 524, 710, 1225
AcuI	CTGAAG	1 cut(s)	213
AcyI	GRCGYC	1 cut(s)	1444
AfaI	GTAC	2 cut(s)	744, 1425
AfeI	AGCGCT	1 cut(s)	921
AfiI	CCNNNNNNNGG	4 cut(s)	464, 493, 649, 1382
AgeI	ACCGGT	1 cut(s)	537
AgsI	TTSAA	5 cut(s)	195, 524, 546, 1006, 1406
AjuI	GAANNNNNNNTTGG	2 cut(s)	543, 575
AluBI	AGCT	5 cut(s)	227, 413, 631, 854, 1152
AluI	AGCT	5 cut(s)	227, 413, 631, 854, 1152
Alw26I	GTCTC	4 cut(s)	384, 1182, 1289, 1485
AlwI	GGATC	7 cut(s)	70, 83, 525, 1277, 1290, 1349, 1443
Aor51HI	AGCGCT	1 cut(s)	921
AoxI	GGCC	2 cut(s)	939, 1120
ApoI	RAATTY	6 cut(s)	180, 278, 476, 524, 710, 1225
AseI	ATTAAT	1 cut(s)	603
AsiGI	ACCGGT	1 cut(s)	537
AspLEI	GCGC	4 cut(s)	889, 891, 922, 1316
AspS9I	GGNCC	1 cut(s)	1530
AsuHPI	GGTGA	3 cut(s)	447, 476, 575
AvaII	GGWCC	1 cut(s)	1530
BamHI	GGATCC	2 cut(s)	75, 1282
BanI	GGYRCC	1 cut(s)	788
BanII	GRGCYC	1 cut(s)	1330
BbsI	GAAGAC	3 cut(s)	41, 758, 1447
BccI	CCATC	5 cut(s)	436, 950, 1243, 1312, 1375
BcgI	CGANNNNNNTGC	2 cut(s)	383, 417
BciVI	GTATCC	1 cut(s)	767
BclI	TGATCA	1 cut(s)	220
BcoDI	GTCTC	4 cut(s)	384, 1182, 1289, 1485
BfaI	CTAG	2 cut(s)	770, 1071
BfoI	RGCGCY	2 cut(s)	923, 1317
BfuI	GTATCC	1 cut(s)	767
Bme18I	GGWCC	1 cut(s)	1530
BmgT120I	GGNCC	1 cut(s)	1530
BmiI	GGNNCC	4 cut(s)	77, 790, 1084, 1284
BmrI	ACTGGG	1 cut(s)	1187
BmsI	GCATC	5 cut(s)	14, 789, 789, 970, 1029
BmuI	ACTGGG	1 cut(s)	1187
BoxI	GACNNNNGTC	2 cut(s)	1026, 1203
BpiI	GAAGAC	3 cut(s)	41, 758, 1447
BpmI	CTGGAG	2 cut(s)	408, 854
BpuEI	CTTGAG	1 cut(s)	1226
BsaHI	GRCGYC	1 cut(s)	1444
BsaI	GGTCTC	2 cut(s)	1182, 1289
BsaJI	CCNNGG	2 cut(s)	250, 487
BsaWI	WCCGGW	2 cut(s)	472, 537
BsaXI	ACNNNNNCTCC	2 cut(s)	1463, 1493
Bsc4I	CCNNNNNNNGG	4 cut(s)	464, 493, 649, 1382
Bse118I	RCCGGY	1 cut(s)	537
Bse1I	ACTGG	5 cut(s)	114, 506, 1186, 1193, 1241
Bse3DI	GCAATG	2 cut(s)	845, 1471
BseDI	CCNNGG	2 cut(s)	250, 487
BseGI	GGATG	2 cut(s)	5, 804
BseLI	CCNNNNNNNGG	4 cut(s)	464, 493, 649, 1382
BseMI	GCAATG	2 cut(s)	845, 1471
BseMII	CTCAG	2 cut(s)	1401, 1496
BseNI	ACTGG	5 cut(s)	114, 506, 1186, 1193, 1241
BsePI	GCGCGC	1 cut(s)	887
BseRI	GAGGAG	1 cut(s)	1286
BsgI	GTGCAG	1 cut(s)	423
Bsh1236I	CGCG	3 cut(s)	136, 591, 889
BshFI	GGCC	2 cut(s)	941, 1122
BshNI	GGYRCC	1 cut(s)	788
BshTI	ACCGGT	1 cut(s)	537
BsiSI	CCGG	2 cut(s)	473, 538
BslI	CCNNNNNNNGG	4 cut(s)	464, 493, 649, 1382
BsmAI	GTCTC	4 cut(s)	384, 1182, 1289, 1485
BsmBI	CGTCTC	1 cut(s)	384
BsnI	GGCC	2 cut(s)	941, 1122
Bso31I	GGTCTC	2 cut(s)	1182, 1289
Bsp1286I	GDGCHC	1 cut(s)	1330
Bsp143I	GATC	8 cut(s)	10, 75, 220, 338, 517, 1282, 1354, 1435
Bsp68I	TCGCGA	1 cut(s)	136
BspACI	CCGC	1 cut(s)	591
BspANI	GGCC	2 cut(s)	941, 1122
BspCNI	CTCAG	2 cut(s)	1402, 1495
BspFNI	CGCG	3 cut(s)	136, 591, 889
BspLI	GGNNCC	4 cut(s)	77, 790, 1084, 1284
BspPI	GGATC	7 cut(s)	70, 83, 525, 1277, 1290, 1349, 1443
BspT107I	GGYRCC	1 cut(s)	788
BspTNI	GGTCTC	2 cut(s)	1182, 1289
BsrDI	GCAATG	2 cut(s)	845, 1471
BsrFI	RCCGGY	1 cut(s)	537
BsrI	ACTGG	5 cut(s)	114, 506, 1186, 1193, 1241
BssAI	RCCGGY	1 cut(s)	537
BssECI	CCNNGG	2 cut(s)	250, 487
BssHII	GCGCGC	1 cut(s)	887
BssMI	GATC	8 cut(s)	10, 75, 220, 338, 517, 1282, 1354, 1435
BssNI	GRCGYC	1 cut(s)	1444
BssT1I	CCWWGG	1 cut(s)	487
Bst6I	CTCTTC	2 cut(s)	1130, 1180
BstACI	GRCGYC	1 cut(s)	1444
BstC8I	GCNNGC	5 cut(s)	889, 924, 1212, 1400, 1462
BstDEI	CTNAG	2 cut(s)	1410, 1482
BstDSI	CCRYGG	1 cut(s)	250
BstF5I	GGATG	2 cut(s)	5, 804
BstFNI	CGCG	3 cut(s)	136, 591, 889
BstH2I	RGCGCY	2 cut(s)	923, 1317
BstHHI	GCGC	4 cut(s)	889, 891, 922, 1316
BstKTI	GATC	8 cut(s)	13, 78, 223, 341, 520, 1285, 1357, 1438
BstMAI	GTCTC	4 cut(s)	384, 1182, 1289, 1485
BstMBI	GATC	8 cut(s)	10, 75, 220, 338, 517, 1282, 1354, 1435
BstMWI	GCNNNNNNNGC	2 cut(s)	410, 786
BstNSI	RCATGY	3 cut(s)	166, 743, 1402
BstPAI	GACNNNNGTC	2 cut(s)	1026, 1203
BstUI	CGCG	3 cut(s)	136, 591, 889
BstV2I	GAAGAC	3 cut(s)	41, 758, 1447
BstX2I	RGATCY	4 cut(s)	75, 517, 1282, 1354
BstYI	RGATCY	4 cut(s)	75, 517, 1282, 1354
BsuI	GTATCC	1 cut(s)	767
BsuRI	GGCC	2 cut(s)	941, 1122
BtgI	CCRYGG	1 cut(s)	250
BtsCI	GGATG	2 cut(s)	5, 804
BtsI	GCAGTG	1 cut(s)	909
BtsIMutI	CAGTG	4 cut(s)	289, 499, 909, 1200
BtuMI	TCGCGA	1 cut(s)	136
Cac8I	GCNNGC	5 cut(s)	889, 924, 1212, 1400, 1462
CfoI	GCGC	4 cut(s)	889, 891, 922, 1316
Cfr10I	RCCGGY	1 cut(s)	537
Cfr13I	GGNCC	1 cut(s)	1530
CseI	GACGC	1 cut(s)	1452
Csp6I	GTAC	2 cut(s)	743, 1424
CspAI	ACCGGT	1 cut(s)	537
CviAII	CATG	8 cut(s)	163, 740, 848, 866, 879, 892, 935, 1399
CviQI	GTAC	2 cut(s)	743, 1424
DdeI	CTNAG	2 cut(s)	1410, 1482
DpnI	GATC	8 cut(s)	12, 77, 222, 340, 519, 1284, 1356, 1437
DpnII	GATC	8 cut(s)	10, 75, 220, 338, 517, 1282, 1354, 1435
DraI	TTTAAA	1 cut(s)	1128
Eam1104I	CTCTTC	2 cut(s)	1130, 1180
EarI	CTCTTC	2 cut(s)	1130, 1180
Eco130I	CCWWGG	1 cut(s)	487
Eco24I	GRGCYC	1 cut(s)	1330
Eco31I	GGTCTC	2 cut(s)	1182, 1289
Eco32I	GATATC	2 cut(s)	872, 970
Eco47I	GGWCC	1 cut(s)	1530
Eco47III	AGCGCT	1 cut(s)	921
Eco57I	CTGAAG	1 cut(s)	213
EcoRI	GAATTC	1 cut(s)	476
EcoRV	GATATC	2 cut(s)	872, 970
EcoT14I	CCWWGG	1 cut(s)	487
EcoT38I	GRGCYC	1 cut(s)	1330
ErhI	CCWWGG	1 cut(s)	487
Esp3I	CGTCTC	1 cut(s)	384
FaeI	CATG	8 cut(s)	166, 743, 851, 869, 882, 895, 938, 1402
FalI	AAGNNNNNCTT	2 cut(s)	888, 920
FatI	CATG	8 cut(s)	162, 739, 847, 865, 878, 891, 934, 1398
FauNDI	CATATG	1 cut(s)	243
FbaI	TGATCA	1 cut(s)	220
FblI	GTMKAC	2 cut(s)	469, 1233
FokI	GGATG	1 cut(s)	811
FriOI	GRGCYC	1 cut(s)	1330
FspBI	CTAG	2 cut(s)	770, 1071
GlaI	GCGC	4 cut(s)	888, 890, 921, 1315
GsuI	CTGGAG	2 cut(s)	408, 854
HaeII	RGCGCY	2 cut(s)	923, 1317
HaeIII	GGCC	2 cut(s)	941, 1122
HapII	CCGG	2 cut(s)	473, 538
HgaI	GACGC	1 cut(s)	1452
HhaI	GCGC	4 cut(s)	889, 891, 922, 1316
Hin1I	GRCGYC	1 cut(s)	1444
Hin1II	CATG	8 cut(s)	166, 743, 851, 869, 882, 895, 938, 1402
Hin6I	GCGC	4 cut(s)	887, 889, 920, 1314
HinP1I	GCGC	4 cut(s)	887, 889, 920, 1314
HincII	GTYRAC	1 cut(s)	820
HindII	GTYRAC	1 cut(s)	820
HindIII	AAGCTT	1 cut(s)	225
HinfI	GANTC	7 cut(s)	103, 293, 310, 1057, 1361, 1406, 1478
HpaII	CCGG	2 cut(s)	473, 538
HphI	GGTGA	3 cut(s)	447, 476, 575
Hpy166II	GTNNAC	5 cut(s)	470, 507, 820, 1198, 1234
Hpy188I	TCNGA	9 cut(s)	10, 298, 600, 1021, 1270, 1366, 1411, 1485, 1498
Hpy8I	GTNNAC	5 cut(s)	470, 507, 820, 1198, 1234
HpyAV	CCTTC	4 cut(s)	358, 462, 700, 779
HpyCH4V	TGCA	6 cut(s)	359, 404, 530, 780, 934, 961
HpyF10VI	GCNNNNNNNGC	2 cut(s)	410, 786
HpyF3I	CTNAG	2 cut(s)	1410, 1482
Hsp92I	GRCGYC	1 cut(s)	1444
Hsp92II	CATG	8 cut(s)	166, 743, 851, 869, 882, 895, 938, 1402
HspAI	GCGC	4 cut(s)	887, 889, 920, 1314
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	8 cut(s)	10, 75, 220, 338, 517, 1282, 1354, 1435
LmnI	GCTCC	2 cut(s)	835, 851
LweI	GCATC	5 cut(s)	14, 789, 789, 970, 1029
MaeI	CTAG	2 cut(s)	770, 1071
MaeIII	GTNAC	5 cut(s)	97, 284, 497, 1454, 1511
MalI	GATC	8 cut(s)	12, 77, 222, 340, 519, 1284, 1356, 1437
MboI	GATC	8 cut(s)	10, 75, 220, 338, 517, 1282, 1354, 1435
MboII	GAAGA	7 cut(s)	46, 423, 637, 758, 1147, 1197, 1452
MflI	RGATCY	4 cut(s)	75, 517, 1282, 1354
MhlI	GDGCHC	1 cut(s)	1330
MlyI	GAGTC	2 cut(s)	1066, 1487
MmeI	TCCRAC	1 cut(s)	1234
MslI	CAYNNNNRTG	2 cut(s)	318, 896
MspI	CCGG	2 cut(s)	473, 538
MvnI	CGCG	3 cut(s)	136, 591, 889
MwoI	GCNNNNNNNGC	2 cut(s)	410, 786
NdeI	CATATG	1 cut(s)	243
NdeII	GATC	8 cut(s)	10, 75, 220, 338, 517, 1282, 1354, 1435
NlaIII	CATG	8 cut(s)	166, 743, 851, 869, 882, 895, 938, 1402
NlaIV	GGNNCC	4 cut(s)	77, 790, 1084, 1284
NmuCI	GTSAC	5 cut(s)	97, 284, 497, 1454, 1511
NruI	TCGCGA	1 cut(s)	136
NspI	RCATGY	3 cut(s)	166, 743, 1402
PaeI	GCATGC	1 cut(s)	1402
PauI	GCGCGC	1 cut(s)	887
PcsI	WCGNNNNNNNCGW	2 cut(s)	1435, 1444
PfeI	GAWTC	5 cut(s)	103, 293, 310, 1361, 1406
PinAI	ACCGGT	1 cut(s)	537
PleI	GAGTC	2 cut(s)	1065, 1486
PpsI	GAGTC	2 cut(s)	1065, 1486
PshAI	GACNNNNGTC	2 cut(s)	1026, 1203
PshBI	ATTAAT	1 cut(s)	603
PspN4I	GGNNCC	4 cut(s)	77, 790, 1084, 1284
PspPI	GGNCC	1 cut(s)	1530
PsuI	RGATCY	4 cut(s)	75, 517, 1282, 1354
PteI	GCGCGC	1 cut(s)	887
RruI	TCGCGA	1 cut(s)	136
RsaI	GTAC	2 cut(s)	744, 1425
RsaNI	GTAC	2 cut(s)	743, 1424
RseI	CAYNNNNRTG	2 cut(s)	318, 896
Sau3AI	GATC	8 cut(s)	10, 75, 220, 338, 517, 1282, 1354, 1435
Sau96I	GGNCC	1 cut(s)	1530
SchI	GAGTC	2 cut(s)	1066, 1487
SduI	GDGCHC	1 cut(s)	1330
SfaNI	GCATC	5 cut(s)	14, 789, 789, 970, 1029
SinI	GGWCC	1 cut(s)	1530
SmiMI	CAYNNNNRTG	2 cut(s)	318, 896
SmlI	CTYRAG	1 cut(s)	1241
SmoI	CTYRAG	1 cut(s)	1241
SphI	GCATGC	1 cut(s)	1402
SsiI	CCGC	1 cut(s)	591
SspMI	CTAG	2 cut(s)	770, 1071
StyI	CCWWGG	1 cut(s)	487
TaqI	TCGA	8 cut(s)	337, 783, 945, 964, 1307, 1429, 1438, 1552
TatI	WGTACW	1 cut(s)	1423
TfiI	GAWTC	5 cut(s)	103, 293, 310, 1361, 1406
TscAI	CASTG	4 cut(s)	289, 506, 916, 1200
TseFI	GTSAC	5 cut(s)	97, 284, 497, 1454, 1511
Tsp45I	GTSAC	5 cut(s)	97, 284, 497, 1454, 1511
TspDTI	ATGAA	3 cut(s)	302, 836, 908
TspRI	CASTG	4 cut(s)	289, 506, 916, 1200
VpaK11BI	GGWCC	1 cut(s)	1530
VspI	ATTAAT	1 cut(s)	603
XapI	RAATTY	6 cut(s)	180, 278, 476, 524, 710, 1225
XceI	RCATGY	3 cut(s)	166, 743, 1402
XcmI	CCANNNNNNNNNTGG	1 cut(s)	248
XmiI	GTMKAC	2 cut(s)	469, 1233
XspI	CTAG	2 cut(s)	770, 1071

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.