Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002303

Physical Location & Seq

Genomic Coordinates Forward (+)

37610282 .. 37613865

Gene Structure 3584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0217500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGGTGACGCTTTGTTTGAGCTGGAGAACAATCTCAGGTCCAAACAGGCGAATTTGACGCCTGAAGAAGTAAGGGTTCTTTCAGCTTGCAAGTCTAAGGCTATGAGGGAGTTCACATTCGGAGGGCTTGCAGCTGGTGTTGTAGCCTGGACAGCATCATCAAAGCTGAGTAAGATGATCCGACTTAACCTTTCGGGAGGAGCTGCTGCGATGTTTGGACTGTGGAGATTTTCTAGAGCCTTAGATTCATGTGTGGAACATATTCTTGCACTGGATGGGAGTCGGATGCAGGCAGAGTTGGCAACTATAATGGTGACAAAACATCAGAATGATCGTCAGAGGATGCAGCTTATCTCTAAGCAGTTCTATTGTGAGGAGGTTTTTGATGATTCAACCTCGGAACGCCCAAAAATAAGGTGGCGTTATCGGAATTACTTTAGTGATAATATTGCTCATGGTCAAAGAACACATGACAGCGACTCCTACAGCAACTCTCCAGCTGATTCAGACAGTGTCCCCCATGGTGACTATCACAATTCCTTTGATGGTGATTCCCAAGACACCCAAAGTGACACCCAGAATGACTCTAACAAAAGACGGATCAATTTTGACCCTAGACGAGTTCCTATGAACTCCAGCATTGGTGCAACGGCAGACCCTTTTGAATATATCTTCGGTTATCCAGCACCAAAGGAGGAGCTTCATCTTCCAGACACCTCGAGTCTTTCCCCGAAAGCGCAGGCTCGTAACCGTAGACGATCTCACCGCAAGCGTCGTACGCATCATCAGGAAGATGTATCAAGCCTCCAACATGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

272

Amino Acids

30.91

Weight (kDa)

8.4

Isoelectric Point (pI)

66.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09440 AT1G09440 AT1G56720 AT1G56720 AT1G56720 AT1G56720
fragaria_vesca	FvH4_4g21450 FvH4_4g21450 FvH4_6g08381
malus_domestica	MD04G1187400.v1.1 MD12G1201000.v1.1 MD13G1141100.v1.1 MD16G1137200.v1.1
prunus_persica	Prupe.1G106300_v2.0.a1 Prupe.1G106300_v2.0.a1 Prupe.6G306000_v2.0.a1 Prupe.6G306000_v2.0.a1 Prupe.6G306000_v2.0.a1
pyrus_communis	pycom04g16550 pycom12g18730 pycom13g12260 pycom16g12090 pycom16g12100
rosa_chinensis	RchiOBHm_Chr3g0458331 RchiOBHm_Chr4g0427381
rosa_laevigata	RLG00000007248 RLG00000025168
rosa_multiflora	Rmu_sc0003813.1_g000020 Rmu_sc0007338.1_g000007
rosa_roxburghii	Rroxscaffold_5G00369050 Rroxscaffold_6G00421160
rosa_rugosa	Rorug03G0025800 Rorug03G0025800 Rorug04G0217200 Rorug04G0217300 Rorug04G0217400 Rorug04G0217500
rosa_samantha	Rh3BG089600 Rh4AG273600 Rh4DG276600
rosa_wichuraiana	Rw3G007360 Rw4G023730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	754
AciI	CCGC	1 cut(s)	766
AclWI	GGATC	2 cut(s)	172, 608
AcsI	RAATTY	1 cut(s)	52
AcuI	CTGAAG	1 cut(s)	84
AcyI	GRCGYC	1 cut(s)	59
AfaI	GTAC	1 cut(s)	778
AflIII	ACRYGT	1 cut(s)	811
AgsI	TTSAA	2 cut(s)	393, 665
AjnI	CCWGG	1 cut(s)	146
AluBI	AGCT	8 cut(s)	22, 86, 134, 166, 203, 349, 500, 700
AluI	AGCT	8 cut(s)	22, 86, 134, 166, 203, 349, 500, 700
AlwI	GGATC	2 cut(s)	172, 608
Ama87I	CYCGRG	1 cut(s)	718
ApeKI	GCWGC	4 cut(s)	131, 203, 206, 346
ApoI	RAATTY	1 cut(s)	52
ArsI	GACNNNNNNTTYG	1 cut(s)	31
Asp700I	GAANNNNTTC	1 cut(s)	261
AspLEI	GCGC	1 cut(s)	739
AspS9I	GGNCC	1 cut(s)	39
AsuHPI	GGTGA	5 cut(s)	17, 325, 536, 560, 755
AvaI	CYCGRG	1 cut(s)	718
AvaII	GGWCC	1 cut(s)	39
BbvI	GCAGC	4 cut(s)	143, 190, 193, 358
BccI	CCATC	2 cut(s)	269, 539
BceAI	ACGGC	1 cut(s)	666
BciT130I	CCWGG	1 cut(s)	148
BfaI	CTAG	2 cut(s)	234, 615
BfmI	CTRYAG	1 cut(s)	484
BisI	GCNGC	4 cut(s)	132, 204, 207, 347
BlsI	GCNGC	4 cut(s)	133, 205, 208, 348
Bme1390I	CCNGG	1 cut(s)	148
Bme18I	GGWCC	1 cut(s)	39
BmeT110I	CYCGRG	1 cut(s)	718
BmgT120I	GGNCC	1 cut(s)	39
BmrFI	CCNGG	1 cut(s)	148
BmsI	GCATC	4 cut(s)	164, 276, 333, 790
BpmI	CTGGAG	3 cut(s)	44, 480, 619
BsaHI	GRCGYC	1 cut(s)	59
BsaJI	CCNNGG	2 cut(s)	396, 520
BsaXI	ACNNNNNCTCC	2 cut(s)	464, 494
Bse1I	ACTGG	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	148
BseDI	CCNNGG	2 cut(s)	396, 520
BseGI	GGATG	3 cut(s)	280, 291, 348
BseMII	CTCAG	2 cut(s)	49, 158
BseNI	ACTGG	1 cut(s)	276
BseRI	GAGGAG	3 cut(s)	213, 389, 710
BseXI	GCAGC	4 cut(s)	143, 190, 193, 358
BsiHKCI	CYCGRG	1 cut(s)	718
BsiWI	CGTACG	1 cut(s)	776
BslFI	GGGAC	1 cut(s)	500
BsmFI	GGGAC	1 cut(s)	500
BsoBI	CYCGRG	1 cut(s)	718
Bsp143I	GATC	4 cut(s)	177, 331, 600, 758
Bsp19I	CCATGG	1 cut(s)	520
BspACI	CCGC	1 cut(s)	766
BspCNI	CTCAG	2 cut(s)	48, 159
BspPI	GGATC	2 cut(s)	172, 608
BsrI	ACTGG	1 cut(s)	276
BssECI	CCNNGG	2 cut(s)	396, 520
BssMI	GATC	4 cut(s)	177, 331, 600, 758
BssNI	GRCGYC	1 cut(s)	59
BssT1I	CCWWGG	1 cut(s)	520
Bst2UI	CCWGG	1 cut(s)	148
Bst4CI	ACNGT	3 cut(s)	222, 512, 752
BstACI	GRCGYC	1 cut(s)	59
BstC8I	GCNNGC	5 cut(s)	88, 129, 291, 741, 770
BstDEI	CTNAG	5 cut(s)	35, 96, 167, 241, 357
BstDSI	CCRYGG	1 cut(s)	520
BstF5I	GGATG	3 cut(s)	280, 291, 348
BstHHI	GCGC	1 cut(s)	739
BstKTI	GATC	4 cut(s)	180, 334, 603, 761
BstMBI	GATC	4 cut(s)	177, 331, 600, 758
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 299, 778
BstNI	CCWGG	1 cut(s)	148
BstNSI	RCATGY	1 cut(s)	815
BstSCI	CCNGG	1 cut(s)	146
BstSFI	CTRYAG	1 cut(s)	484
BstV1I	GCAGC	4 cut(s)	143, 190, 193, 358
BtgI	CCRYGG	1 cut(s)	520
BtgZI	GCGATG	1 cut(s)	224
BtsCI	GGATG	3 cut(s)	280, 291, 348
BtsIMutI	CAGTG	2 cut(s)	269, 517
Cac8I	GCNNGC	5 cut(s)	88, 129, 291, 741, 770
CfoI	GCGC	1 cut(s)	739
Cfr13I	GGNCC	1 cut(s)	39
CseI	GACGC	3 cut(s)	17, 67, 761
Csp6I	GTAC	1 cut(s)	777
CviAII	CATG	5 cut(s)	249, 455, 470, 521, 812
CviQI	GTAC	1 cut(s)	777
DdeI	CTNAG	5 cut(s)	35, 96, 167, 241, 357
DpnI	GATC	4 cut(s)	179, 333, 602, 760
DpnII	GATC	4 cut(s)	177, 331, 600, 758
Eco130I	CCWWGG	1 cut(s)	520
Eco47I	GGWCC	1 cut(s)	39
Eco57I	CTGAAG	1 cut(s)	84
Eco88I	CYCGRG	1 cut(s)	718
EcoRII	CCWGG	1 cut(s)	146
EcoT14I	CCWWGG	1 cut(s)	520
ErhI	CCWWGG	1 cut(s)	520
FaeI	CATG	5 cut(s)	252, 458, 473, 524, 815
FaqI	GGGAC	1 cut(s)	500
FatI	CATG	5 cut(s)	248, 454, 469, 520, 811
FblI	GTMKAC	1 cut(s)	754
Fnu4HI	GCNGC	4 cut(s)	132, 204, 207, 347
FokI	GGATG	3 cut(s)	287, 298, 355
Fsp4HI	GCNGC	4 cut(s)	132, 204, 207, 347
FspBI	CTAG	2 cut(s)	234, 615
GlaI	GCGC	1 cut(s)	738
GluI	GCNGC	4 cut(s)	132, 204, 207, 347
GsuI	CTGGAG	3 cut(s)	44, 480, 619
HgaI	GACGC	3 cut(s)	17, 67, 761
HhaI	GCGC	1 cut(s)	739
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	5 cut(s)	252, 458, 473, 524, 815
Hin6I	GCGC	1 cut(s)	737
HinP1I	GCGC	1 cut(s)	737
HinfI	GANTC	8 cut(s)	245, 280, 389, 479, 503, 551, 584, 721
HphI	GGTGA	5 cut(s)	17, 325, 536, 560, 755
Hpy166II	GTNNAC	2 cut(s)	114, 755
Hpy188I	TCNGA	8 cut(s)	122, 182, 285, 327, 339, 400, 429, 508
Hpy188III	TCNNGA	4 cut(s)	195, 234, 710, 788
Hpy8I	GTNNAC	2 cut(s)	114, 755
Hpy99I	CGWCG	1 cut(s)	777
HpyCH4III	ACNGT	3 cut(s)	222, 512, 752
HpyCH4V	TGCA	6 cut(s)	90, 131, 269, 289, 346, 647
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 299, 778
HpyF3I	CTNAG	5 cut(s)	35, 96, 167, 241, 357
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	5 cut(s)	252, 458, 473, 524, 815
HspAI	GCGC	1 cut(s)	737
Kzo9I	GATC	4 cut(s)	177, 331, 600, 758
LmnI	GCTCC	2 cut(s)	200, 697
Lsp1109I	GCAGC	4 cut(s)	143, 190, 193, 358
LweI	GCATC	4 cut(s)	164, 276, 333, 790
MaeI	CTAG	2 cut(s)	234, 615
MaeIII	GTNAC	5 cut(s)	5, 313, 524, 569, 746
MalI	GATC	4 cut(s)	179, 333, 602, 760
MboI	GATC	4 cut(s)	177, 331, 600, 758
MboII	GAAGA	4 cut(s)	77, 664, 698, 803
MluCI	AATT	4 cut(s)	52, 430, 535, 604
MlyI	GAGTC	4 cut(s)	289, 473, 578, 730
MmeI	TCCRAC	2 cut(s)	205, 263
MroXI	GAANNNNTTC	1 cut(s)	261
MseI	TTAA	1 cut(s)	186
MslI	CAYNNNNRTG	1 cut(s)	327
MspA1I	CMGCKG	2 cut(s)	134, 500
MspR9I	CCNGG	1 cut(s)	148
MvaI	CCWGG	1 cut(s)	148
MwoI	GCNNNNNNNGC	3 cut(s)	152, 299, 778
NcoI	CCATGG	1 cut(s)	520
NdeII	GATC	4 cut(s)	177, 331, 600, 758
NlaIII	CATG	5 cut(s)	252, 458, 473, 524, 815
NmuCI	GTSAC	4 cut(s)	5, 313, 524, 569
NspI	RCATGY	1 cut(s)	815
PaeR7I	CTCGAG	1 cut(s)	718
PciI	ACATGT	1 cut(s)	811
PdmI	GAANNNNTTC	1 cut(s)	261
PfeI	GAWTC	4 cut(s)	245, 389, 503, 551
Pfl23II	CGTACG	1 cut(s)	776
PflFI	GACNNNGTC	1 cut(s)	512
PkrI	GCNGC	4 cut(s)	133, 205, 208, 348
PleI	GAGTC	4 cut(s)	288, 473, 578, 729
PpsI	GAGTC	4 cut(s)	288, 473, 578, 729
PscI	ACATGT	1 cut(s)	811
Psp6I	CCWGG	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	146
PspLI	CGTACG	1 cut(s)	776
PspPI	GGNCC	1 cut(s)	39
PspXI	VCTCGAGB	1 cut(s)	718
PsyI	GACNNNGTC	1 cut(s)	512
PvuII	CAGCTG	2 cut(s)	134, 500
RsaI	GTAC	1 cut(s)	778
RsaNI	GTAC	1 cut(s)	777
RseI	CAYNNNNRTG	1 cut(s)	327
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	4 cut(s)	132, 204, 207, 347
Sau3AI	GATC	4 cut(s)	177, 331, 600, 758
Sau96I	GGNCC	1 cut(s)	39
SchI	GAGTC	4 cut(s)	289, 473, 578, 730
ScrFI	CCNGG	1 cut(s)	148
SfaNI	GCATC	4 cut(s)	164, 276, 333, 790
SfcI	CTRYAG	1 cut(s)	484
Sfr274I	CTCGAG	1 cut(s)	718
SinI	GGWCC	1 cut(s)	39
SlaI	CTCGAG	1 cut(s)	718
SmiMI	CAYNNNNRTG	1 cut(s)	327
SmlI	CTYRAG	1 cut(s)	718
SmoI	CTYRAG	1 cut(s)	718
Sse9I	AATT	4 cut(s)	52, 430, 535, 604
SsiI	CCGC	1 cut(s)	766
SspI	AATATT	1 cut(s)	448
SspMI	CTAG	2 cut(s)	234, 615
StyD4I	CCNGG	1 cut(s)	146
StyI	CCWWGG	1 cut(s)	520
TaaI	ACNGT	3 cut(s)	222, 512, 752
TaqI	TCGA	1 cut(s)	719
TasI	AATT	4 cut(s)	52, 430, 535, 604
TfiI	GAWTC	4 cut(s)	245, 389, 503, 551
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TscAI	CASTG	2 cut(s)	276, 517
TseFI	GTSAC	4 cut(s)	5, 313, 524, 569
TseI	GCWGC	4 cut(s)	131, 203, 206, 346
Tsp45I	GTSAC	4 cut(s)	5, 313, 524, 569
TspDTI	ATGAA	3 cut(s)	237, 644, 692
TspGWI	ACGGA	1 cut(s)	613
TspRI	CASTG	2 cut(s)	276, 517
Tth111I	GACNNNGTC	1 cut(s)	512
VpaK11BI	GGWCC	1 cut(s)	39
XapI	RAATTY	1 cut(s)	52
XbaI	TCTAGA	1 cut(s)	233
XceI	RCATGY	1 cut(s)	815
XcmI	CCANNNNNNNNNTGG	1 cut(s)	414
XhoI	CTCGAG	1 cut(s)	718
XmiI	GTMKAC	1 cut(s)	754
XmnI	GAANNNNTTC	1 cut(s)	261
XspI	CTAG	2 cut(s)	234, 615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.