Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0002303

Physical Location & Seq

Genomic Coordinates Forward (+)

8451999 .. 8454083

Gene Structure 2085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g12100.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGTACAAGCCTTCTTCACAGCCTATAACTGCCTCTTCACCTCTATCTGGTCTACCTGAATTTTCTCGCCTTGGTTGGGGTCACTGGTTTACATTAAGGGACCTCGAATTTGCAACAAGTCGGTTTTCAAAGGAAAATGTCATTGGTGAGGGTGGATATGGAGTTGTTTATCGGGGTAATCTGATTAATGGATCTCCTGTGGCTGTGAAGAAGCTACTCAACAACCTAGGACAAGCAGAGAAGGAATTCAGAGTAGAAGTTGAGGCTATTGGGCATGTACGACACAAAAACTTGGTTCGACTTTTGGGATACTGCATCGAAGGCACCCACAGGTTGCTGGTTTATGAGTACGTCAACAATGGAAATTTGGAACAATGGCTACATGGAGCTATGTGCCATCATGGATATCTCACATGGGAGGCACGCATGAAAGTTCTTCTTGGCACCGCTAAAGCGTTGGCTTATTTGCATGAGGCCATTGAACCAAAAGTTGTGCATCGAGACATTAAGTCGAGCAATATCTTGCTTGATGATGACTTCAATGCTAAGATTTCCGACTTTGGTCTGGCAAAGTTGCTAGGTGCCGGGAAGAGTCATATTACGACTAGAGTTATGGGTACCTTTGGATATGTGGCCCCAGAATATGCCAACTCTGGCCTTCTAAATGAGAAGAGTGATGTTTATAGCTTTGGGGTTGTGATTTTGGAAGCAATCACTGGAAGAGATCCAGTGGATTATGGTCGGCCAGAACAAGAGGTAAATTTGGTAGATTGGCTCAAGATGATGGTTGGAAGCAGGCGTTCAGAAGAGGTGGTAGATCCGAACATTGAGACCAGGCCATCTACGAGCGCCCTTAAACGAGCCCTTTTGACTGCACTGAGGTGTGTAGATCCAGATTCTGATAAAAGGCCTAAAATGGGGCAAGTGGTTCGCATGCTTGAATCGGAGGAGTATCCCATACCACGAGAGGACCGAAGACGCCGAAGAAATCAAGCAGGGAATACAGAAGCCGAGTCTCTGAATTCTGATACAGATAAGGGTGAGAATCCAGATGCAAAGACAGATAGCAGAAGGAACCATCGAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

363

Amino Acids

40.68

Weight (kDa)

7.75

Isoelectric Point (pI)

46.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09440 AT1G09440 AT1G56720 AT1G56720 AT1G56720 AT1G56720
fragaria_vesca	FvH4_4g21450 FvH4_4g21450 FvH4_6g08381
malus_domestica	MD04G1187400.v1.1 MD12G1201000.v1.1 MD13G1141100.v1.1 MD16G1137200.v1.1
prunus_persica	Prupe.1G106300_v2.0.a1 Prupe.1G106300_v2.0.a1 Prupe.6G306000_v2.0.a1 Prupe.6G306000_v2.0.a1 Prupe.6G306000_v2.0.a1
pyrus_communis	pycom04g16550 pycom12g18730 pycom13g12260 pycom16g12090 pycom16g12100
rosa_chinensis	RchiOBHm_Chr3g0458331 RchiOBHm_Chr4g0427381
rosa_laevigata	RLG00000007248 RLG00000025168
rosa_multiflora	Rmu_sc0003813.1_g000020 Rmu_sc0007338.1_g000007
rosa_roxburghii	Rroxscaffold_5G00369050 Rroxscaffold_6G00421160
rosa_rugosa	Rorug03G0025800 Rorug03G0025800 Rorug04G0217200 Rorug04G0217300 Rorug04G0217400 Rorug04G0217500
rosa_samantha	Rh3BG089600 Rh4AG273600 Rh4DG276600
rosa_wichuraiana	Rw3G007360 Rw4G023730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	617
AccB1I	GGYRCC	4 cut(s)	323, 443, 581, 617
AccI	GTMKAC	1 cut(s)	52
AciI	CCGC	1 cut(s)	447
AclWI	GGATC	4 cut(s)	199, 719, 812, 884
AcoI	YGGCCR	1 cut(s)	743
AcsI	RAATTY	6 cut(s)	59, 107, 245, 364, 760, 1021
AcyI	GRCGYC	1 cut(s)	979
AfaI	GTAC	4 cut(s)	5, 279, 350, 619
AfiI	CCNNNNNNNGG	3 cut(s)	47, 76, 917
AgsI	TTSAA	4 cut(s)	129, 482, 541, 941
AhdI	GACNNNNNGTC	1 cut(s)	508
AjnI	CCWGG	1 cut(s)	833
AjuI	GAANNNNNNNTTGG	2 cut(s)	126, 158
AleI	CACNNNNGTG	1 cut(s)	880
AluBI	AGCT	3 cut(s)	214, 389, 687
AluI	AGCT	3 cut(s)	214, 389, 687
Alw26I	GTCTC	3 cut(s)	495, 824, 1020
AlwI	GGATC	4 cut(s)	199, 719, 812, 884
AlwNI	CAGNNNCTG	1 cut(s)	899
AoxI	GGCC	6 cut(s)	474, 633, 655, 743, 836, 908
ApoI	RAATTY	6 cut(s)	59, 107, 245, 364, 760, 1021
ArsI	GACNNNNNNTTYG	2 cut(s)	92, 124
AseI	ATTAAT	1 cut(s)	186
Asp700I	GAANNNNTTC	1 cut(s)	245
Asp718I	GGTACC	1 cut(s)	617
AspA2I	CCTAGG	1 cut(s)	226
AspLEI	GCGC	1 cut(s)	851
AspS9I	GGNCC	3 cut(s)	100, 634, 970
AsuC2I	CCSGG	1 cut(s)	586
AsuHPI	GGTGA	3 cut(s)	30, 158, 1052
AvaII	GGWCC	2 cut(s)	100, 970
AvrII	CCTAGG	1 cut(s)	226
BanI	GGYRCC	4 cut(s)	323, 443, 581, 617
BanII	GRGCYC	1 cut(s)	865
BauI	CACGAG	1 cut(s)	963
BbsI	GAAGAC	1 cut(s)	982
BccI	CCATC	4 cut(s)	405, 778, 847, 1086
BcgI	CGANNNNNNTGC	2 cut(s)	911, 945
BciT130I	CCWGG	1 cut(s)	835
BciVI	GTATCC	2 cut(s)	302, 963
BcnI	CCSGG	1 cut(s)	586
BcoDI	GTCTC	3 cut(s)	495, 824, 1020
BfaI	CTAG	3 cut(s)	227, 578, 606
BfoI	RGCGCY	1 cut(s)	852
BfuI	GTATCC	2 cut(s)	302, 963
BlnI	CCTAGG	1 cut(s)	226
Bme1390I	CCNGG	2 cut(s)	586, 835
Bme18I	GGWCC	2 cut(s)	100, 970
BmeRI	GACNNNNNGTC	1 cut(s)	508
BmgT120I	GGNCC	3 cut(s)	100, 634, 970
BmiI	GGNNCC	7 cut(s)	101, 325, 445, 583, 619, 636, 1076
BmrFI	CCNGG	2 cut(s)	586, 835
BmsI	GCATC	3 cut(s)	324, 505, 1042
BoxI	GACNNNNGTC	1 cut(s)	561
BpiI	GAAGAC	1 cut(s)	982
BpuEI	CTTGAG	1 cut(s)	761
BpuMI	CCSGG	1 cut(s)	586
BsaHI	GRCGYC	1 cut(s)	979
BsaI	GGTCTC	1 cut(s)	824
BsaJI	CCNNGG	2 cut(s)	70, 226
Bsc4I	CCNNNNNNNGG	3 cut(s)	47, 76, 917
Bse1I	ACTGG	3 cut(s)	89, 721, 728
BseBI	CCWGG	1 cut(s)	835
BseDI	CCNNGG	2 cut(s)	70, 226
BseLI	CCNNNNNNNGG	3 cut(s)	47, 76, 917
BseMII	CTCAG	1 cut(s)	869
BseNI	ACTGG	3 cut(s)	89, 721, 728
BseRI	GAGGAG	1 cut(s)	962
BsgI	GTGCAG	1 cut(s)	858
BshFI	GGCC	6 cut(s)	476, 635, 657, 745, 838, 910
BshNI	GGYRCC	4 cut(s)	323, 443, 581, 617
BsiSI	CCGG	1 cut(s)	585
BslFI	GGGAC	1 cut(s)	113
BslI	CCNNNNNNNGG	3 cut(s)	47, 76, 917
BsmAI	GTCTC	3 cut(s)	495, 824, 1020
BsmFI	GGGAC	1 cut(s)	113
BsnI	GGCC	6 cut(s)	476, 635, 657, 745, 838, 910
Bso31I	GGTCTC	1 cut(s)	824
Bsp1286I	GDGCHC	1 cut(s)	865
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	4 cut(s)	191, 724, 817, 889
BspACI	CCGC	1 cut(s)	447
BspANI	GGCC	6 cut(s)	476, 635, 657, 745, 838, 910
BspCNI	CTCAG	1 cut(s)	870
BspLI	GGNNCC	7 cut(s)	101, 325, 445, 583, 619, 636, 1076
BspPI	GGATC	4 cut(s)	199, 719, 812, 884
BspT107I	GGYRCC	4 cut(s)	323, 443, 581, 617
BspTNI	GGTCTC	1 cut(s)	824
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	3 cut(s)	89, 721, 728
BssECI	CCNNGG	2 cut(s)	70, 226
BssMI	GATC	4 cut(s)	191, 724, 817, 889
BssNI	GRCGYC	1 cut(s)	979
BssSI	CACGAG	1 cut(s)	963
BssT1I	CCWWGG	2 cut(s)	70, 226
Bst2BI	CACGAG	1 cut(s)	963
Bst2UI	CCWGG	1 cut(s)	835
Bst6I	CTCTTC	5 cut(s)	40, 584, 665, 715, 801
BstACI	GRCGYC	1 cut(s)	979
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	3 cut(s)	424, 797, 935
BstDEI	CTNAG	2 cut(s)	546, 878
BstH2I	RGCGCY	1 cut(s)	852
BstHHI	GCGC	1 cut(s)	851
BstKTI	GATC	4 cut(s)	194, 727, 820, 892
BstMAI	GTCTC	3 cut(s)	495, 824, 1020
BstMBI	GATC	4 cut(s)	191, 724, 817, 889
BstMWI	GCNNNNNNNGC	1 cut(s)	321
BstNI	CCWGG	1 cut(s)	835
BstNSI	RCATGY	2 cut(s)	278, 937
BstPAI	GACNNNNGTC	1 cut(s)	561
BstSCI	CCNGG	2 cut(s)	584, 833
BstV2I	GAAGAC	1 cut(s)	982
BstX2I	RGATCY	4 cut(s)	191, 724, 817, 889
BstYI	RGATCY	4 cut(s)	191, 724, 817, 889
BsuI	GTATCC	2 cut(s)	302, 963
BsuRI	GGCC	6 cut(s)	476, 635, 657, 745, 838, 910
BtsIMutI	CAGTG	4 cut(s)	82, 714, 735, 875
Cac8I	GCNNGC	3 cut(s)	424, 797, 935
CaiI	CAGNNNCTG	1 cut(s)	899
CfoI	GCGC	1 cut(s)	851
Cfr13I	GGNCC	3 cut(s)	100, 634, 970
CseI	GACGC	1 cut(s)	987
Csp6I	GTAC	4 cut(s)	4, 278, 349, 618
CviAII	CATG	7 cut(s)	275, 383, 401, 414, 427, 470, 934
CviQI	GTAC	4 cut(s)	4, 278, 349, 618
DdeI	CTNAG	2 cut(s)	546, 878
DpnI	GATC	4 cut(s)	193, 726, 819, 891
DpnII	GATC	4 cut(s)	191, 724, 817, 889
DriI	GACNNNNNGTC	1 cut(s)	508
EaeI	YGGCCR	1 cut(s)	743
Eam1104I	CTCTTC	5 cut(s)	40, 584, 665, 715, 801
Eam1105I	GACNNNNNGTC	1 cut(s)	508
EarI	CTCTTC	5 cut(s)	40, 584, 665, 715, 801
Eco130I	CCWWGG	2 cut(s)	70, 226
Eco147I	AGGCCT	1 cut(s)	910
Eco24I	GRGCYC	1 cut(s)	865
Eco31I	GGTCTC	1 cut(s)	824
Eco32I	GATATC	1 cut(s)	407
Eco47I	GGWCC	2 cut(s)	100, 970
EcoO109I	RGGNCCY	1 cut(s)	100
EcoRI	GAATTC	2 cut(s)	245, 1021
EcoRII	CCWGG	1 cut(s)	833
EcoRV	GATATC	1 cut(s)	407
EcoT14I	CCWWGG	2 cut(s)	70, 226
EcoT38I	GRGCYC	1 cut(s)	865
ErhI	CCWWGG	2 cut(s)	70, 226
FaeI	CATG	7 cut(s)	278, 386, 404, 417, 430, 473, 937
FalI	AAGNNNNNCTT	2 cut(s)	423, 455
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	7 cut(s)	274, 382, 400, 413, 426, 469, 933
FblI	GTMKAC	1 cut(s)	52
FriOI	GRGCYC	1 cut(s)	865
FspBI	CTAG	3 cut(s)	227, 578, 606
GlaI	GCGC	1 cut(s)	850
HaeII	RGCGCY	1 cut(s)	852
HaeIII	GGCC	6 cut(s)	476, 635, 657, 745, 838, 910
HapII	CCGG	1 cut(s)	585
HgaI	GACGC	1 cut(s)	987
HhaI	GCGC	1 cut(s)	851
Hin1I	GRCGYC	1 cut(s)	979
Hin1II	CATG	7 cut(s)	278, 386, 404, 417, 430, 473, 937
Hin6I	GCGC	1 cut(s)	849
HinP1I	GCGC	1 cut(s)	849
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HinfI	GANTC	5 cut(s)	592, 896, 941, 1013, 1045
HpaII	CCGG	1 cut(s)	585
HphI	GGTGA	3 cut(s)	30, 158, 1052
Hpy166II	GTNNAC	3 cut(s)	53, 90, 355
Hpy188I	TCNGA	9 cut(s)	183, 251, 556, 805, 822, 901, 946, 1020, 1027
Hpy188III	TCNNGA	4 cut(s)	500, 778, 893, 1049
Hpy8I	GTNNAC	3 cut(s)	53, 90, 355
HpyAV	CCTTC	5 cut(s)	21, 235, 314, 668, 1065
HpyCH4IV	ACGT	1 cut(s)	351
HpyCH4V	TGCA	6 cut(s)	113, 315, 469, 496, 875, 1055
HpyF10VI	GCNNNNNNNGC	1 cut(s)	321
HpyF3I	CTNAG	2 cut(s)	546, 878
HpySE526I	ACGT	1 cut(s)	351
Hsp92I	GRCGYC	1 cut(s)	979
Hsp92II	CATG	7 cut(s)	278, 386, 404, 417, 430, 473, 937
HspAI	GCGC	1 cut(s)	849
KpnI	GGTACC	1 cut(s)	621
Kzo9I	GATC	4 cut(s)	191, 724, 817, 889
LmnI	GCTCC	1 cut(s)	386
LweI	GCATC	3 cut(s)	324, 505, 1042
MaeI	CTAG	3 cut(s)	227, 578, 606
MaeII	ACGT	1 cut(s)	351
MaeIII	GTNAC	1 cut(s)	80
MalI	GATC	4 cut(s)	193, 726, 819, 891
MboI	GATC	4 cut(s)	191, 724, 817, 889
MflI	RGATCY	4 cut(s)	191, 724, 817, 889
MhlI	GDGCHC	1 cut(s)	865
MluCI	AATT	6 cut(s)	59, 107, 245, 364, 760, 1021
MlyI	GAGTC	2 cut(s)	601, 1022
MmeI	TCCRAC	2 cut(s)	579, 769
MroXI	GAANNNNTTC	1 cut(s)	245
MseI	TTAA	4 cut(s)	95, 186, 507, 855
MslI	CAYNNNNRTG	1 cut(s)	880
MspI	CCGG	1 cut(s)	585
MspR9I	CCNGG	2 cut(s)	586, 835
MvaI	CCWGG	1 cut(s)	835
MwoI	GCNNNNNNNGC	1 cut(s)	321
NciI	CCSGG	1 cut(s)	586
NdeII	GATC	4 cut(s)	191, 724, 817, 889
NlaIII	CATG	7 cut(s)	278, 386, 404, 417, 430, 473, 937
NlaIV	GGNNCC	7 cut(s)	101, 325, 445, 583, 619, 636, 1076
NmeAIII	GCCGAG	1 cut(s)	1036
NmuCI	GTSAC	1 cut(s)	80
NspI	RCATGY	2 cut(s)	278, 937
OliI	CACNNNNGTG	1 cut(s)	880
PaeI	GCATGC	1 cut(s)	937
PceI	AGGCCT	1 cut(s)	910
PcsI	WCGNNNNNNNCGW	1 cut(s)	970
PdmI	GAANNNNTTC	1 cut(s)	245
PfeI	GAWTC	3 cut(s)	896, 941, 1045
PleI	GAGTC	2 cut(s)	600, 1021
PpsI	GAGTC	2 cut(s)	600, 1021
PpuMI	RGGWCCY	1 cut(s)	100
PshAI	GACNNNNGTC	1 cut(s)	561
PshBI	ATTAAT	1 cut(s)	186
Psp5II	RGGWCCY	1 cut(s)	100
Psp6I	CCWGG	1 cut(s)	833
PspGI	CCWGG	1 cut(s)	833
PspN4I	GGNNCC	7 cut(s)	101, 325, 445, 583, 619, 636, 1076
PspPI	GGNCC	3 cut(s)	100, 634, 970
PspPPI	RGGWCCY	1 cut(s)	100
PsrI	GAACNNNNNNTAC	2 cut(s)	363, 395
PstNI	CAGNNNCTG	1 cut(s)	899
PsuI	RGATCY	4 cut(s)	191, 724, 817, 889
RsaI	GTAC	4 cut(s)	5, 279, 350, 619
RsaNI	GTAC	4 cut(s)	4, 278, 349, 618
RseI	CAYNNNNRTG	1 cut(s)	880
SaqAI	TTAA	4 cut(s)	95, 186, 507, 855
Sau3AI	GATC	4 cut(s)	191, 724, 817, 889
Sau96I	GGNCC	3 cut(s)	100, 634, 970
SchI	GAGTC	2 cut(s)	601, 1022
ScrFI	CCNGG	2 cut(s)	586, 835
SduI	GDGCHC	1 cut(s)	865
SfaNI	GCATC	3 cut(s)	324, 505, 1042
SinI	GGWCC	2 cut(s)	100, 970
SmiMI	CAYNNNNRTG	1 cut(s)	880
SmlI	CTYRAG	1 cut(s)	776
SmoI	CTYRAG	1 cut(s)	776
SphI	GCATGC	1 cut(s)	937
Sse9I	AATT	6 cut(s)	59, 107, 245, 364, 760, 1021
SseBI	AGGCCT	1 cut(s)	910
SsiI	CCGC	1 cut(s)	447
SspMI	CTAG	3 cut(s)	227, 578, 606
StuI	AGGCCT	1 cut(s)	910
StyD4I	CCNGG	2 cut(s)	584, 833
StyI	CCWWGG	2 cut(s)	70, 226
TaiI	ACGT	1 cut(s)	354
TaqI	TCGA	6 cut(s)	105, 298, 318, 499, 512, 1081
TaqII	GACCGA	1 cut(s)	987
TasI	AATT	6 cut(s)	59, 107, 245, 364, 760, 1021
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	3 cut(s)	896, 941, 1045
Tru1I	TTAA	4 cut(s)	95, 186, 507, 855
Tru9I	TTAA	4 cut(s)	95, 186, 507, 855
TscAI	CASTG	4 cut(s)	89, 721, 735, 882
TseFI	GTSAC	1 cut(s)	80
Tsp45I	GTSAC	1 cut(s)	80
TspDTI	ATGAA	1 cut(s)	443
TspRI	CASTG	4 cut(s)	89, 721, 735, 882
VpaK11BI	GGWCC	2 cut(s)	100, 970
VspI	ATTAAT	1 cut(s)	186
XapI	RAATTY	6 cut(s)	59, 107, 245, 364, 760, 1021
XceI	RCATGY	2 cut(s)	278, 937
XmaJI	CCTAGG	1 cut(s)	226
XmiI	GTMKAC	1 cut(s)	52
XmnI	GAANNNNTTC	1 cut(s)	245
XspI	CTAG	3 cut(s)	227, 578, 606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.