AT1G10040

Putative serine esterase (DUF676)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0008052
Physical Location & Seq
Reverse (-)
3275891 .. 3278779
2889 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G10040.2

Sequence Viewer

Length: 1239 bp
ATGGAGGAAGAAGATAGCGTGATTCCTAAGAATACAGAAGGAGATGGGCGTGTTGGAAGTGATCTTGAAGGAATCCGTAAGCCAAAGAAGATGAAGAAGATGAGAAGCAGGAAGAGTGATGATAAAGAGACGAAGAAGAAGAAGAAAAAGTATTGGATGGGTTGTCTCAGAGCTGAATCAGACGAAAGTGGAAACGTCGATTTGACTGTTGATTTCCCTGGCGAACGCACTGAGCCGACTCACCTAGTCGTCATGGTCAACGGTCTCATCGGCAGTGCTCAGAATTGGAGATTCGCCGCTAAGCAGATGCTTAAGAAGTATCCTCAGGATCTCCTCGTTCACTGCAGTAAACGCAACCATTCCACACAGACATTTGATGGTGTTGATGTTATGGGAGAAAGATTAGCTGAAGAGGTTAGGTCGGTGATCAAACGTCACCCAAGTCTTCAGAAGATTTCCTTTGTAGGACATTCTTTAGGTGGCCTGATTGCTAGGTATGCTATTGGGCGTCTTTATGAGCAAGAATCCCGAGAAGAGCTTCCACATAATAGTGACGACATTGGTGATAAATGCTCGATAGAGGAACCGAAAGCAAGAATCGCTGGATTAGAGCCTGTGTATTTTATAACTTCTGCAACACCACACCTTGGTTCAAGAGGACATAAACAGGTCCCATTGTTTTCTGGATCTTACACTTTGGAGAGATTAGCTACGCGTATGTCGGGTTGTCTTGGTAAAACGGGAAAACATCTTTTTCTGGCTGATAGTGATGGTGGAAAGCCTCCATTACTCCTCCGGATGGTTAAAGATTCTAGAGATCTTAAATTCATTTCTGCTTTGCAATGCTTCAAACGGCGTATTGCTTACGCGAATACAAGTTTCGACCACCTTGTTGGGTGGAGTACATCGTCTATCCGGCGTCACAATGAGCTTCCTAAGCTTCAACGTGGTCCAGTCAATGAGAAGTATCCTCACATTGTGAATGTTGAAGCACCGGATACTGCAAGTAACTATGAGGAAGATCATTCAAGGACCAAAGCAGACAGGTTCAAGAACTTAGATATGGAAGAGGAGATGATAAGAGAATTAACAAAACTGAGCTGGGAACGAGTTGATGTTAGTTTCAGAGGAACGCTGCAAAGATTTCTCGCTCACAATACCATTCAGGTGAAAACAAAGATGATCAATTCAGCTGGAGCAGATGTTATACAACACATGATTGACAATTTTGAGCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF676

Protein Analysis

412

Amino Acids

46.79

Weight (kDa)

9.11

Isoelectric Point (pI)

45.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF676 PF05057 78 - 302 1.4e-65 Putative serine esterase (DUF676)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 626
AccB7I CCANNNNNTGG 1 cut(s) 647
AccII CGCG 2 cut(s) 715, 869
AccIII TCCGGA 1 cut(s) 795
AciI CCGC 1 cut(s) 297
AclWI GGATC 2 cut(s) 336, 694
AcsI RAATTY 1 cut(s) 824
AcuI CTGAAG 2 cut(s) 429, 431
AcyI GRCGYC 2 cut(s) 508, 919
AdeI CACNNNGTG 1 cut(s) 979
AfaI GTAC 1 cut(s) 904
AfiI CCNNNNNNNGG 2 cut(s) 647, 799
AflII CTTAAG 1 cut(s) 311
AflIII ACRYGT 1 cut(s) 713
AgsI TTSAA 7 cut(s) 68, 654, 850, 944, 989, 1029, 1051
AjnI CCWGG 1 cut(s) 217
AluBI AGCT 8 cut(s) 173, 407, 538, 710, 931, 940, 1101, 1193
AluI AGCT 8 cut(s) 173, 407, 538, 710, 931, 940, 1101, 1193
Alw21I GWGCWC 1 cut(s) 280
Alw26I GTCTC 3 cut(s) 122, 170, 269
AlwI GGATC 2 cut(s) 336, 694
Ama87I CYCGRG 1 cut(s) 528
Aor13HI TCCGGA 1 cut(s) 795
AoxI GGCC 1 cut(s) 481
ApeKI GCWGC 1 cut(s) 1135
ApoI RAATTY 1 cut(s) 824
Asp700I GAANNNNTTC 1 cut(s) 537
AspS9I GGNCC 3 cut(s) 670, 950, 1032
AsuHPI GGTGA 5 cut(s) 233, 428, 436, 575, 1180
AvaI CYCGRG 1 cut(s) 528
AvaII GGWCC 3 cut(s) 670, 950, 1032
AxyI CCTNAGG 1 cut(s) 324
BbsI GAAGAC 1 cut(s) 437
Bbv12I GWGCWC 1 cut(s) 280
BbvI GCAGC 1 cut(s) 1122
BccI CCATC 5 cut(s) 38, 151, 371, 764, 793
BceAI ACGGC 1 cut(s) 869
BciT130I CCWGG 1 cut(s) 219
BciVI GTATCC 3 cut(s) 330, 978, 991
BclI TGATCA 2 cut(s) 426, 1182
BcoDI GTCTC 3 cut(s) 122, 170, 269
BfaI CTAG 3 cut(s) 245, 492, 813
BfmI CTRYAG 1 cut(s) 343
BfrI CTTAAG 1 cut(s) 311
BfuI GTATCC 3 cut(s) 330, 978, 991
BglII AGATCT 1 cut(s) 817
BisI GCNGC 2 cut(s) 297, 1136
BlpI GCTNAGC 1 cut(s) 300
BlsI GCNGC 2 cut(s) 298, 1137
Bme1390I CCNGG 1 cut(s) 219
Bme18I GGWCC 3 cut(s) 670, 950, 1032
BmeT110I CYCGRG 1 cut(s) 528
BmgT120I GGNCC 3 cut(s) 670, 950, 1032
BmiI GGNNCC 2 cut(s) 585, 672
BmrFI CCNGG 1 cut(s) 219
BmsI GCATC 1 cut(s) 297
BpiI GAAGAC 1 cut(s) 437
BpmI CTGGAG 1 cut(s) 1215
Bpu10I CCTNAGC 1 cut(s) 936
Bpu1102I GCTNAGC 1 cut(s) 300
BsaHI GRCGYC 2 cut(s) 508, 919
BsaI GGTCTC 1 cut(s) 269
BsaJI CCNNGG 2 cut(s) 217, 646
BsaWI WCCGGW 2 cut(s) 795, 994
BsaXI ACNNNNNCTCC 2 cut(s) 1188, 1218
Bsc4I CCNNNNNNNGG 2 cut(s) 647, 799
Bse1I ACTGG 1 cut(s) 953
Bse21I CCTNAGG 1 cut(s) 324
Bse3DI GCAATG 1 cut(s) 848
BseAI TCCGGA 1 cut(s) 795
BseBI CCWGG 1 cut(s) 219
BseDI CCNNGG 2 cut(s) 217, 646
BseGI GGATG 2 cut(s) 162, 804
BseLI CCNNNNNNNGG 2 cut(s) 647, 799
BseMI GCAATG 1 cut(s) 848
BseMII CTCAG 5 cut(s) 181, 222, 293, 338, 1088
BseNI ACTGG 1 cut(s) 953
BseRI GAGGAG 3 cut(s) 323, 782, 1085
BseXI GCAGC 1 cut(s) 1122
BseYI CCCAGC 1 cut(s) 1101
Bsh1236I CGCG 2 cut(s) 715, 869
BshFI GGCC 1 cut(s) 483
BsiHKAI GWGCWC 1 cut(s) 280
BsiHKCI CYCGRG 1 cut(s) 528
BsiSI CCGG 3 cut(s) 796, 916, 995
BslFI GGGAC 1 cut(s) 656
BslI CCNNNNNNNGG 2 cut(s) 647, 799
BsmAI GTCTC 3 cut(s) 122, 170, 269
BsmBI CGTCTC 1 cut(s) 122
BsmFI GGGAC 1 cut(s) 656
BsnI GGCC 1 cut(s) 483
Bso31I GGTCTC 1 cut(s) 269
BsoBI CYCGRG 1 cut(s) 528
Bsp1286I GDGCHC 1 cut(s) 280
Bsp13I TCCGGA 1 cut(s) 795
Bsp143I GATC 7 cut(s) 61, 328, 426, 686, 817, 1021, 1182
Bsp1720I GCTNAGC 1 cut(s) 300
BspACI CCGC 1 cut(s) 297
BspANI GGCC 1 cut(s) 483
BspCNI CTCAG 5 cut(s) 180, 223, 292, 337, 1089
BspEI TCCGGA 1 cut(s) 795
BspFNI CGCG 2 cut(s) 715, 869
BspLI GGNNCC 2 cut(s) 585, 672
BspMAI CTGCAG 1 cut(s) 347
BspPI GGATC 2 cut(s) 336, 694
BspQI GCTCTTC 1 cut(s) 528
BspTI CTTAAG 1 cut(s) 311
BspTNI GGTCTC 1 cut(s) 269
BsrDI GCAATG 1 cut(s) 848
BsrI ACTGG 1 cut(s) 953
BssECI CCNNGG 2 cut(s) 217, 646
BssMI GATC 7 cut(s) 61, 328, 426, 686, 817, 1021, 1182
BssNI GRCGYC 2 cut(s) 508, 919
BssT1I CCWWGG 1 cut(s) 646
Bst2UI CCWGG 1 cut(s) 219
Bst4CI ACNGT 2 cut(s) 208, 263
Bst6I CTCTTC 4 cut(s) 107, 405, 528, 1062
BstACI GRCGYC 2 cut(s) 508, 919
BstAFI CTTAAG 1 cut(s) 311
BstDEI CTNAG 9 cut(s) 27, 167, 231, 279, 300, 324, 936, 1057, 1097
BstF5I GGATG 2 cut(s) 162, 804
BstFNI CGCG 2 cut(s) 715, 869
BstKTI GATC 7 cut(s) 64, 331, 429, 689, 820, 1024, 1185
BstMAI GTCTC 3 cut(s) 122, 170, 269
BstMBI GATC 7 cut(s) 61, 328, 426, 686, 817, 1021, 1182
BstMWI GCNNNNNNNGC 4 cut(s) 351, 497, 599, 937
BstNI CCWGG 1 cut(s) 219
BstSCI CCNGG 1 cut(s) 217
BstSFI CTRYAG 1 cut(s) 343
BstUI CGCG 2 cut(s) 715, 869
BstV1I GCAGC 1 cut(s) 1122
BstV2I GAAGAC 1 cut(s) 437
BstX2I RGATCY 3 cut(s) 328, 686, 817
BstXI CCANNNNNNTGG 1 cut(s) 893
BstYI RGATCY 3 cut(s) 328, 686, 817
Bsu36I CCTNAGG 1 cut(s) 324
BsuI GTATCC 3 cut(s) 330, 978, 991
BsuRI GGCC 1 cut(s) 483
BtsCI GGATG 2 cut(s) 162, 804
BtsI GCAGTG 2 cut(s) 280, 340
BtsIMutI CAGTG 3 cut(s) 228, 280, 340
Cfr13I GGNCC 3 cut(s) 670, 950, 1032
CseI GACGC 2 cut(s) 497, 908
Csp6I GTAC 1 cut(s) 903
CviAII CATG 2 cut(s) 253, 1216
CviQI GTAC 1 cut(s) 903
DdeI CTNAG 9 cut(s) 27, 167, 231, 279, 300, 324, 936, 1057, 1097
DpnI GATC 7 cut(s) 63, 330, 428, 688, 819, 1023, 1184
DpnII GATC 7 cut(s) 61, 328, 426, 686, 817, 1021, 1182
DraIII CACNNNGTG 1 cut(s) 979
Eam1104I CTCTTC 4 cut(s) 107, 405, 528, 1062
EarI CTCTTC 4 cut(s) 107, 405, 528, 1062
Eco130I CCWWGG 1 cut(s) 646
Eco31I GGTCTC 1 cut(s) 269
Eco47I GGWCC 3 cut(s) 670, 950, 1032
Eco57I CTGAAG 2 cut(s) 429, 431
Eco81I CCTNAGG 1 cut(s) 324
Eco88I CYCGRG 1 cut(s) 528
EcoO109I RGGNCCY 1 cut(s) 670
EcoRII CCWGG 1 cut(s) 217
EcoT14I CCWWGG 1 cut(s) 646
ErhI CCWWGG 1 cut(s) 646
Esp3I CGTCTC 1 cut(s) 122
FaeI CATG 2 cut(s) 256, 1219
FalI AAGNNNNNCTT 2 cut(s) 443, 475
FaqI GGGAC 1 cut(s) 656
FatI CATG 2 cut(s) 252, 1215
FbaI TGATCA 2 cut(s) 426, 1182
Fnu4HI GCNGC 2 cut(s) 297, 1136
FokI GGATG 2 cut(s) 169, 811
Fsp4HI GCNGC 2 cut(s) 297, 1136
FspBI CTAG 3 cut(s) 245, 492, 813
GluI GCNGC 2 cut(s) 297, 1136
GsaI CCCAGC 1 cut(s) 1105
GsuI CTGGAG 1 cut(s) 1215
HaeIII GGCC 1 cut(s) 483
HapII CCGG 3 cut(s) 796, 916, 995
HgaI GACGC 2 cut(s) 497, 908
Hin1I GRCGYC 2 cut(s) 508, 919
Hin1II CATG 2 cut(s) 256, 1219
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HindIII AAGCTT 1 cut(s) 938
HinfI GANTC 8 cut(s) 22, 72, 176, 238, 291, 524, 597, 809
HpaII CCGG 3 cut(s) 796, 916, 995
HphI GGTGA 5 cut(s) 233, 428, 436, 575, 1180
Hpy166II GTNNAC 3 cut(s) 259, 340, 350
Hpy188I TCNGA 5 cut(s) 170, 181, 282, 450, 1127
Hpy188III TCNNGA 8 cut(s) 65, 326, 528, 654, 684, 796, 813, 1051
Hpy8I GTNNAC 3 cut(s) 259, 340, 350
Hpy99I CGWCG 1 cut(s) 200
HpyAV CCTTC 2 cut(s) 32, 62
HpyCH4III ACNGT 2 cut(s) 208, 263
HpyCH4IV ACGT 3 cut(s) 195, 433, 946
HpyCH4V TGCA 5 cut(s) 345, 635, 841, 1004, 1138
HpyF10VI GCNNNNNNNGC 4 cut(s) 351, 497, 599, 937
HpyF3I CTNAG 9 cut(s) 27, 167, 231, 279, 300, 324, 936, 1057, 1097
HpySE526I ACGT 3 cut(s) 195, 433, 946
Hsp92I GRCGYC 2 cut(s) 508, 919
Hsp92II CATG 2 cut(s) 256, 1219
Kpn2I TCCGGA 1 cut(s) 795
Ksp22I TGATCA 2 cut(s) 426, 1182
Kzo9I GATC 7 cut(s) 61, 328, 426, 686, 817, 1021, 1182
LguI GCTCTTC 1 cut(s) 528
LmnI GCTCC 1 cut(s) 1196
Lsp1109I GCAGC 1 cut(s) 1122
LweI GCATC 1 cut(s) 297
MaeI CTAG 3 cut(s) 245, 492, 813
MaeII ACGT 3 cut(s) 195, 433, 946
MaeIII GTNAC 4 cut(s) 434, 551, 920, 1007
MalI GATC 7 cut(s) 63, 330, 428, 688, 819, 1023, 1184
MboI GATC 7 cut(s) 61, 328, 426, 686, 817, 1021, 1182
MflI RGATCY 3 cut(s) 328, 686, 817
MhlI GDGCHC 1 cut(s) 280
MluCI AATT 5 cut(s) 283, 824, 1085, 1186, 1225
MluI ACGCGT 1 cut(s) 713
MlyI GAGTC 1 cut(s) 232
MmeI TCCRAC 1 cut(s) 34
MroI TCCGGA 1 cut(s) 795
MroXI GAANNNNTTC 1 cut(s) 537
MseI TTAA 4 cut(s) 312, 804, 822, 1088
MslI CAYNNNNRTG 2 cut(s) 549, 1166
MspA1I CMGCKG 1 cut(s) 1193
MspCI CTTAAG 1 cut(s) 311
MspI CCGG 3 cut(s) 796, 916, 995
MspR9I CCNGG 1 cut(s) 219
MvaI CCWGG 1 cut(s) 219
MvnI CGCG 2 cut(s) 715, 869
MwoI GCNNNNNNNGC 4 cut(s) 351, 497, 599, 937
NdeII GATC 7 cut(s) 61, 328, 426, 686, 817, 1021, 1182
NlaIII CATG 2 cut(s) 256, 1219
NlaIV GGNNCC 2 cut(s) 585, 672
NmuCI GTSAC 3 cut(s) 434, 551, 920
PciSI GCTCTTC 1 cut(s) 528
PdmI GAANNNNTTC 1 cut(s) 537
PfeI GAWTC 7 cut(s) 22, 72, 176, 291, 524, 597, 809
PflMI CCANNNNNTGG 1 cut(s) 647
PkrI GCNGC 2 cut(s) 298, 1137
PleI GAGTC 1 cut(s) 232
PpsI GAGTC 1 cut(s) 232
PpuMI RGGWCCY 1 cut(s) 670
PsiI TTATAA 1 cut(s) 626
Psp5II RGGWCCY 1 cut(s) 670
Psp6I CCWGG 1 cut(s) 217
PspFI CCCAGC 1 cut(s) 1101
PspGI CCWGG 1 cut(s) 217
PspN4I GGNNCC 2 cut(s) 585, 672
PspPI GGNCC 3 cut(s) 670, 950, 1032
PspPPI RGGWCCY 1 cut(s) 670
PstI CTGCAG 1 cut(s) 347
PsuI RGATCY 3 cut(s) 328, 686, 817
PvuII CAGCTG 1 cut(s) 1193
RsaI GTAC 1 cut(s) 904
RsaNI GTAC 1 cut(s) 903
RseI CAYNNNNRTG 2 cut(s) 549, 1166
SapI GCTCTTC 1 cut(s) 528
SaqAI TTAA 4 cut(s) 312, 804, 822, 1088
SatI GCNGC 2 cut(s) 297, 1136
Sau3AI GATC 7 cut(s) 61, 328, 426, 686, 817, 1021, 1182
Sau96I GGNCC 3 cut(s) 670, 950, 1032
SchI GAGTC 1 cut(s) 232
ScrFI CCNGG 1 cut(s) 219
SduI GDGCHC 1 cut(s) 280
SfaNI GCATC 1 cut(s) 297
SfcI CTRYAG 1 cut(s) 343
SinI GGWCC 3 cut(s) 670, 950, 1032
SmiMI CAYNNNNRTG 2 cut(s) 549, 1166
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
Sse9I AATT 5 cut(s) 283, 824, 1085, 1186, 1225
SsiI CCGC 1 cut(s) 297
SspMI CTAG 3 cut(s) 245, 492, 813
StyD4I CCNGG 1 cut(s) 217
StyI CCWWGG 1 cut(s) 646
TaaI ACNGT 2 cut(s) 208, 263
TaiI ACGT 3 cut(s) 198, 436, 949
TaqI TCGA 3 cut(s) 198, 575, 882
TasI AATT 5 cut(s) 283, 824, 1085, 1186, 1225
TatI WGTACW 1 cut(s) 902
TauI GCSGC 1 cut(s) 299
TfiI GAWTC 7 cut(s) 22, 72, 176, 291, 524, 597, 809
Tru1I TTAA 4 cut(s) 312, 804, 822, 1088
Tru9I TTAA 4 cut(s) 312, 804, 822, 1088
TscAI CASTG 3 cut(s) 235, 280, 347
TseFI GTSAC 3 cut(s) 434, 551, 920
TseI GCWGC 1 cut(s) 1135
Tsp45I GTSAC 3 cut(s) 434, 551, 920
TspDTI ATGAA 2 cut(s) 107, 817
TspGWI ACGGA 1 cut(s) 65
TspRI CASTG 3 cut(s) 235, 280, 347
Van91I CCANNNNNTGG 1 cut(s) 647
Vha464I CTTAAG 1 cut(s) 311
VpaK11BI GGWCC 3 cut(s) 670, 950, 1032
XapI RAATTY 1 cut(s) 824
XbaI TCTAGA 1 cut(s) 812
XmnI GAANNNNTTC 1 cut(s) 537
XspI CTAG 3 cut(s) 245, 492, 813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.