Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008052

Physical Location & Seq

Genomic Coordinates Reverse (-)

5229904 .. 5233154

Gene Structure 3251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g08340.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGGAGGCAGTGGAGGTGGAGATCGGGGGCGATGGGGTCATACTGACGGAGGAGCCGTCGAGGGTGATCAAACACAGAGGCGGCAAGAAAAACGCGGGGAAAAAGAAAAGGAGCAAAAATAAGAGGACGATGACGACGAGTGGGAAAAAAGAAACGTTTTTTCACATGCCGAAATTTCGGTGCTTCAGCTCGAAACCCGAAACGGATACGAAAGAGGGTTTCGATATGGAGGTGGAGGATGCAACGGGTGGAAAAATAAGCCCGACCCATTTGATTATTTTGGTGAACGGTCTCATAGGCAGTGCTGAGAATTGGAAATATGCAGCGAAGCAGTTTCTGAAGAGATACCCGGAAGATGTTATTGCTCACTGTAGTGAATGCAATTACTCAATGTTGACCTTTGATGGTGTTGATGTAATGGGAGAGAGATTAGCAGAAGAGGTTATTTCTGTGATAAAACGTCACCCTAGTGTTCAGAAGATCTCGTTTGTTGGTCATTCGTTAGGCGGGCTTATTGCAAGGTATGCCATTGGAAGGCTTTATGAACGAGACATCACTGAAGAACTATCTCAAGAAAATGGAGAATATAGGAGAAATGGAGTTGAGGATCCTTTGCTGGAACACAAAGTCGAAGGCAAAATTGCTGGACTGGAGCCTGTGAATTTTATAACGTCTGCCACTCCGCACCTTGGTTCCAGAGGGCATAATCAGGTTCCACTGTTTTGTGGCGTAAAACCCCTTGAAAAAGTAGCAGCTCGTACTTCATGGTGTCTAGGTAGAAGTGGAAAACATCTGTTTTTAACTGATAAGAAGGATGGAAAACCTCCCCTTCTTCTTCAGATGGTCAATGATTCAGAAGATCTTAAATTCATATCTGCACTGCAGTCTTTCAAGCGCCGTGTTGCCTATGCAAATGTTCGTTTTGACTCCCTTGTCGGATGGAGTACATCATCTCTACGGCGTAAGAACGAGCTGCCAAAGCTTAAACATTTATCTAGAGAAGAAAACTATCCACATATTATAAATGTGGAGACAATTCAAAGTCCAAGTCCCCGAGAAGAATTACCGTTGGAAGCCATAGCCAGTGGGCGCAAGAAAATTGACTTCGAAGAGGAAATGATCAGAAACTTGACCAAAATGAGCTGGGAACGGGTGGATGTGAACTTCAGAGGAAGTAAACAAAGATACCTTGCGCACGGTACCATTCAGGTGCAAAACGATTGTCTATACTCTGATGGGGCTGATGTGATCCAACACATGGTCGACAATTTTCTTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF676

Protein Analysis

427

Amino Acids

48.11

Weight (kDa)

8.8

Isoelectric Point (pI)

47.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10040 AT1G10040
fragaria_vesca	FvH4_2g35100 FvH4_2g35100 FvH4_2g35100
malus_domestica	MD08G1108500.v1.1 MD15G1089000.v1.1
prunus_persica	Prupe.1G443100_v2.0.a1 Prupe.1G443100_v2.0.a1 Prupe.1G443100_v2.0.a1 Prupe.1G443100_v2.0.a1 Prupe.1G443100_v2.0.a1
pyrus_communis	pycom08g09040 pycom15g08340
rosa_chinensis	RchiOBHm_Chr6g0306871
rosa_laevigata	RLG00000010759
rosa_multiflora	Rmu_sc0009381.1_g000006
rosa_roxburghii	Rroxscaffold_7G00161400
rosa_rugosa	Rorug06G0354000
rosa_samantha	Rh6AG465500 Rh6BG435300 Rh6CG479900 Rh6DG466900
rosa_wichuraiana	Rw6G040570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	668, 1022
AasI	GACNNNNNNGTC	1 cut(s)	932
Acc16I	TGCGCA	1 cut(s)	1194
Acc65I	GGTACC	1 cut(s)	1199
AccB1I	GGYRCC	1 cut(s)	1199
AccB7I	CCANNNNNTGG	1 cut(s)	1258
AccI	GTMKAC	1 cut(s)	1263
AccII	CGCG	1 cut(s)	95
AciI	CCGC	4 cut(s)	81, 95, 507, 683
AclI	AACGTT	1 cut(s)	155
AclWI	GGATC	3 cut(s)	602, 615, 1243
AcsI	RAATTY	3 cut(s)	173, 661, 866
AcuI	CTGAAG	5 cut(s)	169, 359, 579, 821, 1150
AfaI	GTAC	3 cut(s)	760, 946, 1201
AfiI	CCNNNNNNNGG	3 cut(s)	534, 689, 1258
AgsI	TTSAA	3 cut(s)	743, 892, 1040
AleI	CACNNNNGTG	2 cut(s)	372, 468
AluBI	AGCT	5 cut(s)	189, 755, 973, 982, 1143
AluI	AGCT	5 cut(s)	189, 755, 973, 982, 1143
Alw26I	GTCTC	3 cut(s)	296, 543, 1025
AlwI	GGATC	3 cut(s)	602, 615, 1243
AlwNI	CAGNNNCTG	1 cut(s)	337
Ama87I	CYCGRG	1 cut(s)	1053
ApeKI	GCWGC	3 cut(s)	323, 752, 973
ApoI	RAATTY	3 cut(s)	173, 661, 866
ArsI	GACNNNNNNTTYG	4 cut(s)	1033, 1065, 1207, 1239
Asp718I	GGTACC	1 cut(s)	1199
AspLEI	GCGC	3 cut(s)	897, 1092, 1195
AsuC2I	CCSGG	1 cut(s)	350
AsuHPI	GGTGA	3 cut(s)	76, 295, 455
AsuII	TTCGAA	1 cut(s)	1107
AvaI	CYCGRG	1 cut(s)	1053
BamHI	GGATCC	1 cut(s)	607
BanI	GGYRCC	1 cut(s)	1199
BbvI	GCAGC	3 cut(s)	335, 764, 960
BccI	CCATC	6 cut(s)	26, 398, 809, 835, 933, 1229
BceAI	ACGGC	3 cut(s)	40, 882, 974
BciVI	GTATCC	1 cut(s)	199
BclI	TGATCA	2 cut(s)	66, 1119
BcnI	CCSGG	1 cut(s)	350
BcoDI	GTCTC	3 cut(s)	296, 543, 1025
BfaI	CTAG	3 cut(s)	468, 773, 996
BfmI	CTRYAG	2 cut(s)	370, 881
BfoI	RGCGCY	1 cut(s)	898
BfuI	GTATCC	1 cut(s)	199
BglII	AGATCT	2 cut(s)	480, 859
BisI	GCNGC	4 cut(s)	82, 324, 753, 974
BlsI	GCNGC	4 cut(s)	83, 325, 754, 975
Bme1390I	CCNGG	1 cut(s)	350
BmeT110I	CYCGRG	1 cut(s)	1053
BmiI	GGNNCC	6 cut(s)	54, 609, 654, 694, 714, 1201
BmrFI	CCNGG	1 cut(s)	350
BmsI	GCATC	1 cut(s)	229
BpmI	CTGGAG	1 cut(s)	671
Bpu14I	TTCGAA	1 cut(s)	1107
BpuEI	CTTGAG	1 cut(s)	555
BpuMI	CCSGG	1 cut(s)	350
BsaI	GGTCTC	1 cut(s)	296
BsaJI	CCNNGG	1 cut(s)	688
BsaXI	ACNNNNNCTCC	2 cut(s)	41, 71
Bsc4I	CCNNNNNNNGG	3 cut(s)	534, 689, 1258
Bse1I	ACTGG	2 cut(s)	654, 1083
BseDI	CCNNGG	1 cut(s)	688
BseGI	GGATG	4 cut(s)	244, 820, 944, 1162
BseLI	CCNNNNNNNGG	3 cut(s)	534, 689, 1258
BseMII	CTCAG	1 cut(s)	297
BseNI	ACTGG	2 cut(s)	654, 1083
BseRI	GAGGAG	1 cut(s)	65
BseXI	GCAGC	3 cut(s)	335, 764, 960
BseYI	CCCAGC	1 cut(s)	1143
BsgI	GTGCAG	1 cut(s)	861
Bsh1236I	CGCG	1 cut(s)	95
BshNI	GGYRCC	1 cut(s)	1199
BsiHKCI	CYCGRG	1 cut(s)	1053
BsiSI	CCGG	1 cut(s)	350
BslFI	GGGAC	1 cut(s)	1035
BslI	CCNNNNNNNGG	3 cut(s)	534, 689, 1258
BsmAI	GTCTC	3 cut(s)	296, 543, 1025
BsmFI	GGGAC	1 cut(s)	1035
BsmI	GAATGC	1 cut(s)	383
Bso31I	GGTCTC	1 cut(s)	296
BsoBI	CYCGRG	1 cut(s)	1053
Bsp119I	TTCGAA	1 cut(s)	1107
Bsp143I	GATC	7 cut(s)	21, 66, 480, 607, 859, 1119, 1248
BspACI	CCGC	4 cut(s)	81, 95, 507, 683
BspCNI	CTCAG	1 cut(s)	298
BspFNI	CGCG	1 cut(s)	95
BspLI	GGNNCC	6 cut(s)	54, 609, 654, 694, 714, 1201
BspMAI	CTGCAG	1 cut(s)	885
BspPI	GGATC	3 cut(s)	602, 615, 1243
BspT104I	TTCGAA	1 cut(s)	1107
BspT107I	GGYRCC	1 cut(s)	1199
BspTNI	GGTCTC	1 cut(s)	296
BsrI	ACTGG	2 cut(s)	654, 1083
BssECI	CCNNGG	1 cut(s)	688
BssMI	GATC	7 cut(s)	21, 66, 480, 607, 859, 1119, 1248
BssT1I	CCWWGG	1 cut(s)	688
Bst4CI	ACNGT	5 cut(s)	290, 371, 720, 1068, 1199
Bst6I	CTCTTC	3 cut(s)	335, 432, 1104
BstAPI	GCANNNNNTGC	1 cut(s)	524
BstBI	TTCGAA	1 cut(s)	1107
BstC8I	GCNNGC	1 cut(s)	509
BstDEI	CTNAG	1 cut(s)	306
BstF5I	GGATG	4 cut(s)	244, 820, 944, 1162
BstFNI	CGCG	1 cut(s)	95
BstH2I	RGCGCY	1 cut(s)	898
BstHHI	GCGC	3 cut(s)	897, 1092, 1195
BstKTI	GATC	7 cut(s)	24, 69, 483, 610, 862, 1122, 1251
BstMAI	GTCTC	3 cut(s)	296, 543, 1025
BstMBI	GATC	7 cut(s)	21, 66, 480, 607, 859, 1119, 1248
BstMWI	GCNNNNNNNGC	2 cut(s)	524, 979
BstNSI	RCATGY	1 cut(s)	169
BstSCI	CCNGG	1 cut(s)	348
BstSFI	CTRYAG	2 cut(s)	370, 881
BstUI	CGCG	1 cut(s)	95
BstV1I	GCAGC	3 cut(s)	335, 764, 960
BstX2I	RGATCY	3 cut(s)	480, 607, 859
BstYI	RGATCY	3 cut(s)	480, 607, 859
BsuI	GTATCC	1 cut(s)	199
BtgZI	GCGATG	1 cut(s)	45
BtsCI	GGATG	4 cut(s)	244, 820, 944, 1162
BtsI	GCAGTG	3 cut(s)	15, 307, 878
BtsIMutI	CAGTG	7 cut(s)	15, 307, 367, 555, 716, 878, 1090
Cac8I	GCNNGC	1 cut(s)	509
CaiI	CAGNNNCTG	1 cut(s)	337
CfoI	GCGC	3 cut(s)	897, 1092, 1195
Csp6I	GTAC	3 cut(s)	759, 945, 1200
CviAII	CATG	3 cut(s)	166, 765, 1258
CviQI	GTAC	3 cut(s)	759, 945, 1200
DdeI	CTNAG	1 cut(s)	306
DpnI	GATC	7 cut(s)	23, 68, 482, 609, 861, 1121, 1250
DpnII	GATC	7 cut(s)	21, 66, 480, 607, 859, 1119, 1248
DrdI	GACNNNNNNGTC	1 cut(s)	932
DseDI	GACNNNNNNGTC	1 cut(s)	932
Eam1104I	CTCTTC	3 cut(s)	335, 432, 1104
EarI	CTCTTC	3 cut(s)	335, 432, 1104
Eco130I	CCWWGG	1 cut(s)	688
Eco31I	GGTCTC	1 cut(s)	296
Eco57I	CTGAAG	5 cut(s)	169, 359, 579, 821, 1150
Eco88I	CYCGRG	1 cut(s)	1053
EcoT14I	CCWWGG	1 cut(s)	688
ErhI	CCWWGG	1 cut(s)	688
FaeI	CATG	3 cut(s)	169, 768, 1261
FaqI	GGGAC	1 cut(s)	1035
FatI	CATG	3 cut(s)	165, 764, 1257
FauI	CCCGC	2 cut(s)	88, 500
FbaI	TGATCA	2 cut(s)	66, 1119
FblI	GTMKAC	1 cut(s)	1263
Fnu4HI	GCNGC	4 cut(s)	82, 324, 753, 974
FokI	GGATG	4 cut(s)	251, 827, 951, 1169
Fsp4HI	GCNGC	4 cut(s)	82, 324, 753, 974
FspBI	CTAG	3 cut(s)	468, 773, 996
FspI	TGCGCA	1 cut(s)	1194
GlaI	GCGC	3 cut(s)	896, 1091, 1194
GluI	GCNGC	4 cut(s)	82, 324, 753, 974
GsaI	CCCAGC	1 cut(s)	1147
GsuI	CTGGAG	1 cut(s)	671
HaeII	RGCGCY	1 cut(s)	898
HapII	CCGG	1 cut(s)	350
HhaI	GCGC	3 cut(s)	897, 1092, 1195
Hin1II	CATG	3 cut(s)	169, 768, 1261
Hin6I	GCGC	3 cut(s)	895, 1090, 1193
HinP1I	GCGC	3 cut(s)	895, 1090, 1193
HincII	GTYRAC	2 cut(s)	396, 1264
HindII	GTYRAC	2 cut(s)	396, 1264
HindIII	AAGCTT	1 cut(s)	980
HinfI	GANTC	2 cut(s)	851, 926
HpaII	CCGG	1 cut(s)	350
HphI	GGTGA	3 cut(s)	76, 295, 455
Hpy166II	GTNNAC	5 cut(s)	286, 396, 1162, 1178, 1264
Hpy188I	TCNGA	8 cut(s)	339, 477, 840, 856, 938, 1124, 1169, 1234
Hpy188III	TCNNGA	3 cut(s)	572, 696, 996
Hpy8I	GTNNAC	5 cut(s)	286, 396, 1162, 1178, 1264
Hpy99I	CGWCG	2 cut(s)	61, 139
HpyAV	CCTTC	4 cut(s)	528, 626, 805, 839
HpyCH4III	ACNGT	5 cut(s)	290, 371, 720, 1068, 1199
HpyCH4IV	ACGT	3 cut(s)	155, 460, 671
HpyCH4V	TGCA	8 cut(s)	242, 323, 381, 518, 878, 883, 911, 1213
HpyF10VI	GCNNNNNNNGC	2 cut(s)	524, 979
HpyF3I	CTNAG	1 cut(s)	306
HpySE526I	ACGT	3 cut(s)	155, 460, 671
Hsp92II	CATG	3 cut(s)	169, 768, 1261
HspAI	GCGC	3 cut(s)	895, 1090, 1193
KpnI	GGTACC	1 cut(s)	1203
Ksp22I	TGATCA	2 cut(s)	66, 1119
Kzo9I	GATC	7 cut(s)	21, 66, 480, 607, 859, 1119, 1248
LmnI	GCTCC	3 cut(s)	52, 111, 652
Lsp1109I	GCAGC	3 cut(s)	335, 764, 960
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	3 cut(s)	468, 773, 996
MaeII	ACGT	3 cut(s)	155, 460, 671
MaeIII	GTNAC	1 cut(s)	461
MalI	GATC	7 cut(s)	23, 68, 482, 609, 861, 1121, 1250
MboI	GATC	7 cut(s)	21, 66, 480, 607, 859, 1119, 1248
MflI	RGATCY	3 cut(s)	480, 607, 859
MlyI	GAGTC	1 cut(s)	920
MmeI	TCCRAC	3 cut(s)	916, 1050, 1276
MseI	TTAA	3 cut(s)	800, 864, 984
MslI	CAYNNNNRTG	3 cut(s)	372, 468, 1208
MspI	CCGG	1 cut(s)	350
MspR9I	CCNGG	1 cut(s)	350
Mva1269I	GAATGC	1 cut(s)	383
MvnI	CGCG	1 cut(s)	95
MwoI	GCNNNNNNNGC	2 cut(s)	524, 979
NciI	CCSGG	1 cut(s)	350
NdeII	GATC	7 cut(s)	21, 66, 480, 607, 859, 1119, 1248
NlaIII	CATG	3 cut(s)	169, 768, 1261
NlaIV	GGNNCC	6 cut(s)	54, 609, 654, 694, 714, 1201
NmuCI	GTSAC	1 cut(s)	461
NsbI	TGCGCA	1 cut(s)	1194
NspI	RCATGY	1 cut(s)	169
NspV	TTCGAA	1 cut(s)	1107
OliI	CACNNNNGTG	2 cut(s)	372, 468
PcsI	WCGNNNNNNNCGW	2 cut(s)	53, 134
PctI	GAATGC	1 cut(s)	383
PfeI	GAWTC	1 cut(s)	851
PflMI	CCANNNNNTGG	1 cut(s)	1258
PkrI	GCNGC	4 cut(s)	83, 325, 754, 975
PleI	GAGTC	1 cut(s)	920
PpsI	GAGTC	1 cut(s)	920
PsiI	TTATAA	2 cut(s)	668, 1022
Psp1406I	AACGTT	1 cut(s)	155
PspFI	CCCAGC	1 cut(s)	1143
PspN4I	GGNNCC	6 cut(s)	54, 609, 654, 694, 714, 1201
PstI	CTGCAG	1 cut(s)	885
PstNI	CAGNNNCTG	1 cut(s)	337
PsuI	RGATCY	3 cut(s)	480, 607, 859
RsaI	GTAC	3 cut(s)	760, 946, 1201
RsaNI	GTAC	3 cut(s)	759, 945, 1200
RseI	CAYNNNNRTG	3 cut(s)	372, 468, 1208
SalI	GTCGAC	1 cut(s)	1262
SaqAI	TTAA	3 cut(s)	800, 864, 984
SatI	GCNGC	4 cut(s)	82, 324, 753, 974
Sau3AI	GATC	7 cut(s)	21, 66, 480, 607, 859, 1119, 1248
SchI	GAGTC	1 cut(s)	920
ScrFI	CCNGG	1 cut(s)	350
SfaNI	GCATC	1 cut(s)	229
SfcI	CTRYAG	2 cut(s)	370, 881
SfuI	TTCGAA	1 cut(s)	1107
SmiMI	CAYNNNNRTG	3 cut(s)	372, 468, 1208
SmlI	CTYRAG	1 cut(s)	570
SmoI	CTYRAG	1 cut(s)	570
SsiI	CCGC	4 cut(s)	81, 95, 507, 683
SspMI	CTAG	3 cut(s)	468, 773, 996
StyD4I	CCNGG	1 cut(s)	348
StyI	CCWWGG	1 cut(s)	688
TaaI	ACNGT	5 cut(s)	290, 371, 720, 1068, 1199
TaiI	ACGT	3 cut(s)	158, 463, 674
TaqI	TCGA	6 cut(s)	59, 191, 222, 630, 1107, 1263
TatI	WGTACW	1 cut(s)	944
TauI	GCSGC	1 cut(s)	84
TfiI	GAWTC	1 cut(s)	851
Tru1I	TTAA	3 cut(s)	800, 864, 984
Tru9I	TTAA	3 cut(s)	800, 864, 984
TscAI	CASTG	7 cut(s)	15, 307, 374, 562, 723, 885, 1090
TseFI	GTSAC	1 cut(s)	461
TseI	GCWGC	3 cut(s)	323, 752, 973
Tsp45I	GTSAC	1 cut(s)	461
TspDTI	ATGAA	3 cut(s)	558, 753, 859
TspGWI	ACGGA	2 cut(s)	62, 218
TspRI	CASTG	7 cut(s)	15, 307, 374, 562, 723, 885, 1090
Van91I	CCANNNNNTGG	1 cut(s)	1258
XapI	RAATTY	3 cut(s)	173, 661, 866
XbaI	TCTAGA	1 cut(s)	995
XceI	RCATGY	1 cut(s)	169
XmiI	GTMKAC	1 cut(s)	1263
XspI	CTAG	3 cut(s)	468, 773, 996

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.