Rw6G040570

Putative serine esterase (DUF676)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0008052
Physical Location & Seq
Forward (+)
64318215 .. 64320911
2697 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G040570.1

Sequence Viewer

Length: 1212 bp
ATGGCTTCTCTGGAGTCGGAGGCCGGCTCCAAATCTTCCAATGAAATCAAACAGAGAGCCAGAAAAAATAGGACCAAGAAGAAGAAGACCAAAAACGGTGCGTTTCGTTACCTCCCCAAATTGCGGTGCTTTAGTTTAAAATCGGAAACGACTGACGGGAGTTTCGATATGGAGGTGGAGGATGAAGCGGGTCGGGGAATGAACCCGACCCACCTTGTTATAATGGTTAATGGGCTTATAGGCAGTGCCGAGGATTGGAGGTATGCAGCGACCCAGTTTGTGAAGAGATACCCAGAACATGTTGTTGTGCATTGCAGTGAATGTAATTGTTCAACCTCGACATTTGATGGTGTGGATGTAATGGGAGACAGATTAGCAGAAGAGGTTAAATCTGTAATAAAACGCCACCCTAGTGTTCAGAAGATCTCGTTTGTTGGTCACTCATTAGGTGGCCTTATAGCAAGGTATGCCATTGGCAGGCTTTATGAACGCGACACAACAAGGGAACTTTCTCTGGAAAATGGAGAATGTAGGGGCAATGGATTTGAGGATCCATCGCTGGAACAGAAAGCGAAAAGCAAAATTGCTGGGCTGGAGCCGGTGAATTTTATAACATCTGCAACTCCGCACCTCGGTTCATGGGGGCACAAACAGGTTCCAGTGTTTTGTGGCTTTCAAATCCTTGAAAAAGCAGCAGCTAGTACTTCATGGTGTTTAGGTAGAACTGGAAGCCATCTGTTTTTAACTGATAGGGATAAAGGAAAACCTCCCCTTTTACTTCAGATGGTTTATGATTCTGAAGATCTTAAATTCTTATCTGCATTGAAGTCCTTCAGGCGTCATGTTGCCTATGCAAATGTTCATTATGATCACCTCGTGGGATGGAGTACATCTTCTATACGTCGTAAGAAGGAGCTGCCAAAGCTTAAACATTTATCCAGAGACAACAAATATCCGCATATTGTAAATGAGGACGTGATAAACACCGCTAGTACTCAAGAAGAAGTTGCTTTGGAGGACGACGTGAATATTAACTTCGAAGAGGAAATGATCAGAGGTTTGACCAAGGTGAGCTGGGAAAGGATTGATGTAAGTTTTAGTGGAAGTAGACAAAAGTACCTTGCACATAATACCATTCAGGTGAAAACTTATTGTATACATTCTGATGGAGCTGATGTGATCCAACACATGGTGGACAATTTTCGTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF676

Protein Analysis

403

Amino Acids

45.47

Weight (kDa)

8.62

Isoelectric Point (pI)

35.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF676 PF05057 68 - 297 1.8e-64 Putative serine esterase (DUF676)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 221, 611
AccB7I CCANNNNNTGG 1 cut(s) 1189
AccI GTMKAC 2 cut(s) 1108, 1156
AccII CGCG 1 cut(s) 492
AciI CCGC 5 cut(s) 124, 188, 626, 956, 987
AclWI GGATC 3 cut(s) 545, 558, 1174
AcsI RAATTY 2 cut(s) 604, 809
AcuI CTGAAG 3 cut(s) 764, 817, 819
AcyI GRCGYC 1 cut(s) 838
AdeI CACNNNGTG 2 cut(s) 877, 1192
AfaI GTAC 4 cut(s) 703, 889, 994, 1118
AfiI CCNNNNNNNGG 5 cut(s) 123, 255, 477, 632, 1189
AflIII ACRYGT 1 cut(s) 298
AgsI TTSAA 4 cut(s) 333, 677, 686, 826
AjiI CACGTC 2 cut(s) 976, 1024
AleI CACNNNNGTG 1 cut(s) 411
AluBI AGCT 5 cut(s) 698, 916, 925, 1074, 1172
AluI AGCT 5 cut(s) 698, 916, 925, 1074, 1172
Alw26I GTCTC 2 cut(s) 360, 936
AlwI GGATC 3 cut(s) 545, 558, 1174
AoxI GGCC 2 cut(s) 21, 451
ApeKI GCWGC 4 cut(s) 266, 692, 695, 916
ApoI RAATTY 2 cut(s) 604, 809
ArsI GACNNNNNNTTYG 2 cut(s) 146, 178
Asp700I GAANNNNTTC 1 cut(s) 830
AspS9I GGNCC 1 cut(s) 72
AsuHPI GGTGA 4 cut(s) 613, 863, 1081, 1153
AsuII TTCGAA 1 cut(s) 1038
AvaII GGWCC 1 cut(s) 72
BaeGI GKGCMC 1 cut(s) 648
BaeI ACNNNNGTAYC 2 cut(s) 1100, 1133
BamHI GGATCC 1 cut(s) 550
BauI CACGAG 1 cut(s) 875
BbsI GAAGAC 1 cut(s) 92
BbvI GCAGC 4 cut(s) 278, 704, 707, 903
BccI CCATC 6 cut(s) 341, 562, 741, 778, 876, 1160
BclI TGATCA 2 cut(s) 868, 1050
BcoDI GTCTC 2 cut(s) 360, 936
BfaI CTAG 3 cut(s) 411, 699, 990
BglII AGATCT 2 cut(s) 423, 802
BisI GCNGC 4 cut(s) 267, 693, 696, 917
BlsI GCNGC 4 cut(s) 268, 694, 697, 918
BmcAI AGTACT 2 cut(s) 703, 994
Bme18I GGWCC 1 cut(s) 72
BmgBI CACGTC 2 cut(s) 976, 1024
BmgT120I GGNCC 1 cut(s) 72
BmiI GGNNCC 4 cut(s) 28, 552, 597, 657
BmrI ACTGGG 1 cut(s) 268
BmuI ACTGGG 1 cut(s) 268
BpiI GAAGAC 1 cut(s) 92
BplI GAGNNNNNCTC 2 cut(s) 11, 43
BpmI CTGGAG 2 cut(s) 32, 614
Bpu14I TTCGAA 1 cut(s) 1038
BpuEI CTTGAG 1 cut(s) 981
BsaHI GRCGYC 1 cut(s) 838
BsaJI CCNNGG 3 cut(s) 249, 631, 1065
BsaXI ACNNNNNCTCC 2 cut(s) 1161, 1191
Bsc4I CCNNNNNNNGG 5 cut(s) 123, 255, 477, 632, 1189
Bse118I RCCGGY 2 cut(s) 23, 598
Bse1I ACTGG 3 cut(s) 274, 659, 730
Bse3DI GCAATG 2 cut(s) 310, 544
BseDI CCNNGG 3 cut(s) 249, 631, 1065
BseGI GGATG 3 cut(s) 187, 361, 887
BseLI CCNNNNNNNGG 5 cut(s) 123, 255, 477, 632, 1189
BseMI GCAATG 2 cut(s) 310, 544
BseNI ACTGG 3 cut(s) 274, 659, 730
BseSI GKGCMC 1 cut(s) 648
BseXI GCAGC 4 cut(s) 278, 704, 707, 903
BseYI CCCAGC 2 cut(s) 587, 1074
Bsh1236I CGCG 1 cut(s) 492
BshFI GGCC 2 cut(s) 23, 453
BsiSI CCGG 2 cut(s) 24, 599
BslI CCNNNNNNNGG 5 cut(s) 123, 255, 477, 632, 1189
BsmAI GTCTC 2 cut(s) 360, 936
BsnI GGCC 2 cut(s) 23, 453
Bsp119I TTCGAA 1 cut(s) 1038
Bsp1286I GDGCHC 1 cut(s) 648
Bsp143I GATC 6 cut(s) 423, 550, 802, 868, 1050, 1179
BspACI CCGC 5 cut(s) 124, 188, 626, 956, 987
BspANI GGCC 2 cut(s) 23, 453
BspFNI CGCG 1 cut(s) 492
BspLI GGNNCC 4 cut(s) 28, 552, 597, 657
BspPI GGATC 3 cut(s) 545, 558, 1174
BspT104I TTCGAA 1 cut(s) 1038
BsrDI GCAATG 2 cut(s) 310, 544
BsrFI RCCGGY 2 cut(s) 23, 598
BsrI ACTGG 3 cut(s) 274, 659, 730
BssAI RCCGGY 2 cut(s) 23, 598
BssECI CCNNGG 3 cut(s) 249, 631, 1065
BssMI GATC 6 cut(s) 423, 550, 802, 868, 1050, 1179
BssNAI GTATAC 1 cut(s) 1157
BssNI GRCGYC 1 cut(s) 838
BssSI CACGAG 1 cut(s) 875
BssT1I CCWWGG 1 cut(s) 1065
Bst1107I GTATAC 1 cut(s) 1157
Bst2BI CACGAG 1 cut(s) 875
Bst4CI ACNGT 1 cut(s) 98
Bst6I CTCTTC 3 cut(s) 278, 375, 1035
BstACI GRCGYC 1 cut(s) 838
BstAPI GCANNNNNTGC 1 cut(s) 467
BstBI TTCGAA 1 cut(s) 1038
BstC8I GCNNGC 2 cut(s) 25, 479
BstF5I GGATG 3 cut(s) 187, 361, 887
BstFNI CGCG 1 cut(s) 492
BstKTI GATC 6 cut(s) 426, 553, 805, 871, 1053, 1182
BstMAI GTCTC 2 cut(s) 360, 936
BstMBI GATC 6 cut(s) 423, 550, 802, 868, 1050, 1179
BstMWI GCNNNNNNNGC 2 cut(s) 467, 922
BstNSI RCATGY 1 cut(s) 302
BstSLI GKGCMC 1 cut(s) 648
BstUI CGCG 1 cut(s) 492
BstV1I GCAGC 4 cut(s) 278, 704, 707, 903
BstV2I GAAGAC 1 cut(s) 92
BstX2I RGATCY 3 cut(s) 423, 550, 802
BstYI RGATCY 3 cut(s) 423, 550, 802
BstZ17I GTATAC 1 cut(s) 1157
BsuRI GGCC 2 cut(s) 23, 453
BtgZI GCGATG 1 cut(s) 540
BtrI CACGTC 2 cut(s) 976, 1024
BtsCI GGATG 3 cut(s) 187, 361, 887
BtsI GCAGTG 2 cut(s) 250, 322
BtsIMutI CAGTG 3 cut(s) 250, 322, 666
Cac8I GCNNGC 2 cut(s) 25, 479
Cfr10I RCCGGY 2 cut(s) 23, 598
Cfr13I GGNCC 1 cut(s) 72
CseI GACGC 1 cut(s) 827
Csp6I GTAC 4 cut(s) 702, 888, 993, 1117
CviAII CATG 5 cut(s) 299, 639, 708, 842, 1189
CviQI GTAC 4 cut(s) 702, 888, 993, 1117
DpnI GATC 6 cut(s) 425, 552, 804, 870, 1052, 1181
DpnII GATC 6 cut(s) 423, 550, 802, 868, 1050, 1179
DraI TTTAAA 1 cut(s) 138
DraIII CACNNNGTG 2 cut(s) 877, 1192
Eam1104I CTCTTC 3 cut(s) 278, 375, 1035
EarI CTCTTC 3 cut(s) 278, 375, 1035
Eco130I CCWWGG 1 cut(s) 1065
Eco47I GGWCC 1 cut(s) 72
Eco57I CTGAAG 3 cut(s) 764, 817, 819
EcoT14I CCWWGG 1 cut(s) 1065
ErhI CCWWGG 1 cut(s) 1065
FaeI CATG 5 cut(s) 302, 642, 711, 845, 1192
FatI CATG 5 cut(s) 298, 638, 707, 841, 1188
FauI CCCGC 1 cut(s) 181
FbaI TGATCA 2 cut(s) 868, 1050
FblI GTMKAC 2 cut(s) 1108, 1156
Fnu4HI GCNGC 4 cut(s) 267, 693, 696, 917
FokI GGATG 3 cut(s) 194, 368, 894
Fsp4HI GCNGC 4 cut(s) 267, 693, 696, 917
FspBI CTAG 3 cut(s) 411, 699, 990
GluI GCNGC 4 cut(s) 267, 693, 696, 917
GsaI CCCAGC 2 cut(s) 591, 1078
GsuI CTGGAG 2 cut(s) 32, 614
HaeIII GGCC 2 cut(s) 23, 453
HapII CCGG 2 cut(s) 24, 599
HgaI GACGC 1 cut(s) 827
Hin1I GRCGYC 1 cut(s) 838
Hin1II CATG 5 cut(s) 302, 642, 711, 845, 1192
HindIII AAGCTT 1 cut(s) 923
HinfI GANTC 2 cut(s) 14, 794
HpaII CCGG 2 cut(s) 24, 599
HphI GGTGA 4 cut(s) 613, 863, 1081, 1153
Hpy166II GTNNAC 3 cut(s) 1109, 1157, 1195
Hpy188I TCNGA 7 cut(s) 19, 145, 420, 783, 799, 1055, 1165
Hpy188III TCNNGA 4 cut(s) 11, 515, 939, 998
Hpy8I GTNNAC 3 cut(s) 1109, 1157, 1195
Hpy99I CGWCG 2 cut(s) 906, 1025
HpyAV CCTTC 2 cut(s) 841, 904
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4IV ACGT 3 cut(s) 901, 975, 1023
HpyCH4V TGCA 7 cut(s) 266, 310, 315, 620, 821, 854, 1124
HpyF10VI GCNNNNNNNGC 2 cut(s) 467, 922
HpySE526I ACGT 3 cut(s) 901, 975, 1023
Hsp92I GRCGYC 1 cut(s) 838
Hsp92II CATG 5 cut(s) 302, 642, 711, 845, 1192
KroI GCCGGC 1 cut(s) 23
KroNI GCCGGC 1 cut(s) 25
Ksp22I TGATCA 2 cut(s) 868, 1050
Kzo9I GATC 6 cut(s) 423, 550, 802, 868, 1050, 1179
LmnI GCTCC 4 cut(s) 32, 595, 913, 1169
Lsp1109I GCAGC 4 cut(s) 278, 704, 707, 903
MaeI CTAG 3 cut(s) 411, 699, 990
MaeII ACGT 3 cut(s) 901, 975, 1023
MaeIII GTNAC 2 cut(s) 107, 437
MalI GATC 6 cut(s) 425, 552, 804, 870, 1052, 1181
MboI GATC 6 cut(s) 423, 550, 802, 868, 1050, 1179
MflI RGATCY 3 cut(s) 423, 550, 802
MhlI GDGCHC 1 cut(s) 648
MluCI AATT 6 cut(s) 119, 325, 582, 604, 809, 1198
MlyI GAGTC 1 cut(s) 23
MmeI TCCRAC 1 cut(s) 1207
MroNI GCCGGC 1 cut(s) 23
MroXI GAANNNNTTC 1 cut(s) 830
MseI TTAA 7 cut(s) 137, 228, 387, 743, 807, 927, 1032
MslI CAYNNNNRTG 4 cut(s) 315, 411, 1139, 1164
MspI CCGG 2 cut(s) 24, 599
MvnI CGCG 1 cut(s) 492
MwoI GCNNNNNNNGC 2 cut(s) 467, 922
NaeI GCCGGC 1 cut(s) 25
NdeII GATC 6 cut(s) 423, 550, 802, 868, 1050, 1179
NgoMIV GCCGGC 1 cut(s) 23
NlaIII CATG 5 cut(s) 302, 642, 711, 845, 1192
NlaIV GGNNCC 4 cut(s) 28, 552, 597, 657
NmeAIII GCCGAG 1 cut(s) 274
NmuCI GTSAC 1 cut(s) 437
NspI RCATGY 1 cut(s) 302
NspV TTCGAA 1 cut(s) 1038
OliI CACNNNNGTG 1 cut(s) 411
PciI ACATGT 1 cut(s) 298
PcsI WCGNNNNNNNCGW 1 cut(s) 162
PdiI GCCGGC 1 cut(s) 25
PdmI GAANNNNTTC 1 cut(s) 830
PfeI GAWTC 1 cut(s) 794
PflMI CCANNNNNTGG 1 cut(s) 1189
PkrI GCNGC 4 cut(s) 268, 694, 697, 918
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
PscI ACATGT 1 cut(s) 298
PsiI TTATAA 2 cut(s) 221, 611
PspFI CCCAGC 2 cut(s) 587, 1074
PspN4I GGNNCC 4 cut(s) 28, 552, 597, 657
PspPI GGNCC 1 cut(s) 72
PsuI RGATCY 3 cut(s) 423, 550, 802
RsaI GTAC 4 cut(s) 703, 889, 994, 1118
RsaNI GTAC 4 cut(s) 702, 888, 993, 1117
RseI CAYNNNNRTG 4 cut(s) 315, 411, 1139, 1164
SaqAI TTAA 7 cut(s) 137, 228, 387, 743, 807, 927, 1032
SatI GCNGC 4 cut(s) 267, 693, 696, 917
Sau3AI GATC 6 cut(s) 423, 550, 802, 868, 1050, 1179
Sau96I GGNCC 1 cut(s) 72
ScaI AGTACT 2 cut(s) 703, 994
SchI GAGTC 1 cut(s) 23
SduI GDGCHC 1 cut(s) 648
SfuI TTCGAA 1 cut(s) 1038
SinI GGWCC 1 cut(s) 72
SmiMI CAYNNNNRTG 4 cut(s) 315, 411, 1139, 1164
SmlI CTYRAG 1 cut(s) 996
SmoI CTYRAG 1 cut(s) 996
Sse9I AATT 6 cut(s) 119, 325, 582, 604, 809, 1198
SsiI CCGC 5 cut(s) 124, 188, 626, 956, 987
SspI AATATT 1 cut(s) 1030
SspMI CTAG 3 cut(s) 411, 699, 990
StyI CCWWGG 1 cut(s) 1065
TaaI ACNGT 1 cut(s) 98
TaiI ACGT 3 cut(s) 904, 978, 1026
TaqI TCGA 3 cut(s) 165, 338, 1038
TasI AATT 6 cut(s) 119, 325, 582, 604, 809, 1198
TatI WGTACW 3 cut(s) 701, 887, 992
TfiI GAWTC 1 cut(s) 794
Tru1I TTAA 7 cut(s) 137, 228, 387, 743, 807, 927, 1032
Tru9I TTAA 7 cut(s) 137, 228, 387, 743, 807, 927, 1032
TscAI CASTG 3 cut(s) 250, 322, 666
TseFI GTSAC 1 cut(s) 437
TseI GCWGC 4 cut(s) 266, 692, 695, 916
Tsp45I GTSAC 1 cut(s) 437
TspDTI ATGAA 7 cut(s) 57, 198, 215, 501, 627, 696, 851
TspRI CASTG 3 cut(s) 250, 322, 666
Van91I CCANNNNNTGG 1 cut(s) 1189
VpaK11BI GGWCC 1 cut(s) 72
XapI RAATTY 2 cut(s) 604, 809
XceI RCATGY 1 cut(s) 302
XmiI GTMKAC 2 cut(s) 1108, 1156
XmnI GAANNNNTTC 1 cut(s) 830
XspI CTAG 3 cut(s) 411, 699, 990
ZrmI AGTACT 2 cut(s) 703, 994
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.