Rroxscaffold_7G00161400

Putative serine esterase (DUF676)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0008052
Physical Location & Seq
Reverse (-)
4173487 .. 4177399
3913 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00161400.1

Sequence Viewer

Length: 1230 bp
ATGGCTTCTCTGGAGTCGGAGGCCGGCTCTGTACGGACCGCCGAATCTTCCAATGAAATCAAACAGAGAGCCAGAAAAAATAGGACCAAGAAGAAGAAGACCAAAAACGGTGCGTTTCGTTACCTCCCCAAATTTCGGTGCTTTAGTGTAAAATCGGAAACGACTGACGGGAAGCGGAGTTTCGATATGGAGGTGGAGGATGAAGCGGGTCGGGGAATGAACCCGACCCACCTTGTCATAATGGTTAATGGGCTTATAGGCAGTGCCGAGGATTGGAGGTATGCAGCGACCCAGTTTGTGAAGAGATACCCAGAAGATGTTGTTGTGCATTGCAGTGAATGTAATTATTCAACGTTGACATTTGATGGTGTGGATGTAATGGGAGACAGATTAGCAGAAGAGGTTAAATCTGTAATAAAACGCCACCCAAGTGTTCAGAAGATCTCGTTTGTTGGTCACTCATTAGGTGGCCTTATAGCAAGGTATGCCATTGGTAAGCTTTATGAACGCGACACAACAAGGGAACTTTCTCAGGAAAATGGAGAATGTAGGGGCAATGGATTTGAGGATCCATCGCTGCAACAGAAAGCGAAAGCCAAAATTGCTGGGCTGGAGCCGGTGAATTTTATAACATCTGCAACTCCGCACCTCGGTTCATGGGGGCATAAACAGGTTCCAGTGTTTTGTGGCTTTCAAATCCTTGAAAAAGCAGCTGCTAGTACTTCATGGTGTTTAGGTAGAACTGGAAGACATCTGTTTTTAACTGATAGGGATAAAGCAAAACCTCCCCTTTTACTTCAGATGGTTTATGATTCTGAAGATCTTAAATTCTTATCTGCATTGAAGTCCTTCAGGCGTCATGTTGCCTATGCAAATGTTCATTATGATCACCTCGTGGGATGGAGTACGTCTTCTATACGTCGTAAGAAGGAGCTGCCAAAGCTTAAACATTTATCCAGAGACAAAAAATATCCACATATTGTAAATGAGGACATGATAAACACCGCTAGTACTCAAGAAGAAGTTGCTTTGGAGGACGACGTGAATATTGACTTCGAAGAGGAAATGATCAGAGGTTTGACCAAGGTGAGCTGGGAAAGGATTGATGTAAGTTTTAGTGGAAGTAGACAAAAGTACCTTGCACATAATACCATTCAGGTGAAAACTTATTGTATAAATTCTGATGGAGCTGATGTGATCCAACACATGGTGGACAATTTTCGTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF676

Protein Analysis

409

Amino Acids

46.35

Weight (kDa)

8.86

Isoelectric Point (pI)

39.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF676 PF05057 74 - 303 3e-65 Putative serine esterase (DUF676)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 629
AccB7I CCANNNNNTGG 1 cut(s) 1207
AccI GTMKAC 1 cut(s) 1126
AccII CGCG 1 cut(s) 510
AciI CCGC 5 cut(s) 39, 175, 206, 644, 1005
AclI AACGTT 1 cut(s) 353
AclWI GGATC 3 cut(s) 563, 576, 1192
AcsI RAATTY 4 cut(s) 131, 622, 827, 1177
AcuI CTGAAG 3 cut(s) 782, 835, 837
AcyI GRCGYC 1 cut(s) 856
AdeI CACNNNGTG 2 cut(s) 895, 1210
AfaI GTAC 5 cut(s) 33, 721, 907, 1012, 1136
AfiI CCNNNNNNNGG 4 cut(s) 135, 273, 650, 1207
AgsI TTSAA 4 cut(s) 351, 695, 704, 844
AjiI CACGTC 1 cut(s) 1042
AleI CACNNNNGTG 1 cut(s) 429
AluBI AGCT 6 cut(s) 499, 713, 934, 943, 1092, 1190
AluI AGCT 6 cut(s) 499, 713, 934, 943, 1092, 1190
Alw26I GTCTC 2 cut(s) 378, 954
AlwI GGATC 3 cut(s) 563, 576, 1192
AoxI GGCC 2 cut(s) 21, 469
ApeKI GCWGC 5 cut(s) 284, 577, 710, 713, 934
ApoI RAATTY 4 cut(s) 131, 622, 827, 1177
Asp700I GAANNNNTTC 1 cut(s) 848
AspS9I GGNCC 2 cut(s) 36, 84
AsuHPI GGTGA 4 cut(s) 631, 881, 1099, 1171
AsuII TTCGAA 1 cut(s) 1056
AvaII GGWCC 2 cut(s) 36, 84
BaeI ACNNNNGTAYC 2 cut(s) 1118, 1151
BamHI GGATCC 1 cut(s) 568
BauI CACGAG 1 cut(s) 893
BbsI GAAGAC 3 cut(s) 104, 754, 903
BbvI GCAGC 5 cut(s) 296, 564, 700, 722, 921
BccI CCATC 5 cut(s) 359, 580, 796, 894, 1178
BclI TGATCA 2 cut(s) 886, 1068
BcoDI GTCTC 2 cut(s) 378, 954
BfaI CTAG 2 cut(s) 717, 1008
BglII AGATCT 2 cut(s) 441, 820
BisI GCNGC 5 cut(s) 285, 578, 711, 714, 935
BlsI GCNGC 5 cut(s) 286, 579, 712, 715, 936
BmcAI AGTACT 2 cut(s) 721, 1012
Bme18I GGWCC 2 cut(s) 36, 84
BmgBI CACGTC 1 cut(s) 1042
BmgT120I GGNCC 2 cut(s) 36, 84
BmiI GGNNCC 3 cut(s) 570, 615, 675
BmrI ACTGGG 1 cut(s) 286
BmuI ACTGGG 1 cut(s) 286
BpiI GAAGAC 3 cut(s) 104, 754, 903
BplI GAGNNNNNCTC 2 cut(s) 11, 43
BpmI CTGGAG 2 cut(s) 32, 632
Bpu14I TTCGAA 1 cut(s) 1056
BpuEI CTTGAG 1 cut(s) 999
BsaHI GRCGYC 1 cut(s) 856
BsaJI CCNNGG 3 cut(s) 267, 649, 1083
BsaXI ACNNNNNCTCC 2 cut(s) 1179, 1209
Bsc4I CCNNNNNNNGG 4 cut(s) 135, 273, 650, 1207
Bse118I RCCGGY 2 cut(s) 23, 616
Bse1I ACTGG 3 cut(s) 292, 677, 748
Bse3DI GCAATG 2 cut(s) 328, 562
BseDI CCNNGG 3 cut(s) 267, 649, 1083
BseGI GGATG 3 cut(s) 205, 379, 905
BseLI CCNNNNNNNGG 4 cut(s) 135, 273, 650, 1207
BseMI GCAATG 2 cut(s) 328, 562
BseMII CTCAG 1 cut(s) 545
BseNI ACTGG 3 cut(s) 292, 677, 748
BseXI GCAGC 5 cut(s) 296, 564, 700, 722, 921
BseYI CCCAGC 2 cut(s) 605, 1092
Bsh1236I CGCG 1 cut(s) 510
BshFI GGCC 2 cut(s) 23, 471
BsiSI CCGG 2 cut(s) 24, 617
BslI CCNNNNNNNGG 4 cut(s) 135, 273, 650, 1207
BsmAI GTCTC 2 cut(s) 378, 954
BsnI GGCC 2 cut(s) 23, 471
Bsp119I TTCGAA 1 cut(s) 1056
Bsp143I GATC 6 cut(s) 441, 568, 820, 886, 1068, 1197
BspACI CCGC 5 cut(s) 39, 175, 206, 644, 1005
BspANI GGCC 2 cut(s) 23, 471
BspCNI CTCAG 1 cut(s) 544
BspFNI CGCG 1 cut(s) 510
BspLI GGNNCC 3 cut(s) 570, 615, 675
BspPI GGATC 3 cut(s) 563, 576, 1192
BspT104I TTCGAA 1 cut(s) 1056
BsrDI GCAATG 2 cut(s) 328, 562
BsrFI RCCGGY 2 cut(s) 23, 616
BsrI ACTGG 3 cut(s) 292, 677, 748
BssAI RCCGGY 2 cut(s) 23, 616
BssECI CCNNGG 3 cut(s) 267, 649, 1083
BssMI GATC 6 cut(s) 441, 568, 820, 886, 1068, 1197
BssNI GRCGYC 1 cut(s) 856
BssSI CACGAG 1 cut(s) 893
BssT1I CCWWGG 1 cut(s) 1083
Bst2BI CACGAG 1 cut(s) 893
Bst4CI ACNGT 1 cut(s) 110
Bst6I CTCTTC 3 cut(s) 296, 393, 1053
BstACI GRCGYC 1 cut(s) 856
BstAPI GCANNNNNTGC 1 cut(s) 485
BstBI TTCGAA 1 cut(s) 1056
BstC8I GCNNGC 1 cut(s) 25
BstDEI CTNAG 1 cut(s) 531
BstF5I GGATG 3 cut(s) 205, 379, 905
BstFNI CGCG 1 cut(s) 510
BstKTI GATC 6 cut(s) 444, 571, 823, 889, 1071, 1200
BstMAI GTCTC 2 cut(s) 378, 954
BstMBI GATC 6 cut(s) 441, 568, 820, 886, 1068, 1197
BstMWI GCNNNNNNNGC 3 cut(s) 485, 602, 940
BstUI CGCG 1 cut(s) 510
BstV1I GCAGC 5 cut(s) 296, 564, 700, 722, 921
BstV2I GAAGAC 3 cut(s) 104, 754, 903
BstX2I RGATCY 3 cut(s) 441, 568, 820
BstYI RGATCY 3 cut(s) 441, 568, 820
BsuRI GGCC 2 cut(s) 23, 471
BtgZI GCGATG 1 cut(s) 558
BtrI CACGTC 1 cut(s) 1042
BtsCI GGATG 3 cut(s) 205, 379, 905
BtsI GCAGTG 2 cut(s) 268, 340
BtsIMutI CAGTG 3 cut(s) 268, 340, 684
Cac8I GCNNGC 1 cut(s) 25
Cfr10I RCCGGY 2 cut(s) 23, 616
Cfr13I GGNCC 2 cut(s) 36, 84
CpoI CGGWCCG 1 cut(s) 36
CseI GACGC 1 cut(s) 845
Csp6I GTAC 5 cut(s) 32, 720, 906, 1011, 1135
CspI CGGWCCG 1 cut(s) 36
CviAII CATG 5 cut(s) 657, 726, 860, 994, 1207
CviQI GTAC 5 cut(s) 32, 720, 906, 1011, 1135
DdeI CTNAG 1 cut(s) 531
DpnI GATC 6 cut(s) 443, 570, 822, 888, 1070, 1199
DpnII GATC 6 cut(s) 441, 568, 820, 886, 1068, 1197
DraIII CACNNNGTG 2 cut(s) 895, 1210
Eam1104I CTCTTC 3 cut(s) 296, 393, 1053
EarI CTCTTC 3 cut(s) 296, 393, 1053
Eco130I CCWWGG 1 cut(s) 1083
Eco47I GGWCC 2 cut(s) 36, 84
Eco57I CTGAAG 3 cut(s) 782, 835, 837
EcoT14I CCWWGG 1 cut(s) 1083
ErhI CCWWGG 1 cut(s) 1083
FaeI CATG 5 cut(s) 660, 729, 863, 997, 1210
FatI CATG 5 cut(s) 656, 725, 859, 993, 1206
FauI CCCGC 1 cut(s) 199
FbaI TGATCA 2 cut(s) 886, 1068
FblI GTMKAC 1 cut(s) 1126
Fnu4HI GCNGC 5 cut(s) 285, 578, 711, 714, 935
FokI GGATG 3 cut(s) 212, 386, 912
Fsp4HI GCNGC 5 cut(s) 285, 578, 711, 714, 935
FspBI CTAG 2 cut(s) 717, 1008
GluI GCNGC 5 cut(s) 285, 578, 711, 714, 935
GsaI CCCAGC 2 cut(s) 609, 1096
GsuI CTGGAG 2 cut(s) 32, 632
HaeIII GGCC 2 cut(s) 23, 471
HapII CCGG 2 cut(s) 24, 617
HgaI GACGC 1 cut(s) 845
Hin1I GRCGYC 1 cut(s) 856
Hin1II CATG 5 cut(s) 660, 729, 863, 997, 1210
HincII GTYRAC 1 cut(s) 357
HindII GTYRAC 1 cut(s) 357
HindIII AAGCTT 2 cut(s) 497, 941
HinfI GANTC 3 cut(s) 14, 44, 812
HpaII CCGG 2 cut(s) 24, 617
HphI GGTGA 4 cut(s) 631, 881, 1099, 1171
Hpy166II GTNNAC 3 cut(s) 357, 1127, 1213
Hpy188I TCNGA 7 cut(s) 19, 157, 438, 801, 817, 1073, 1183
Hpy188III TCNNGA 4 cut(s) 11, 533, 957, 1016
Hpy8I GTNNAC 3 cut(s) 357, 1127, 1213
Hpy99I CGWCG 2 cut(s) 924, 1043
HpyAV CCTTC 2 cut(s) 859, 922
HpyCH4III ACNGT 1 cut(s) 110
HpyCH4IV ACGT 4 cut(s) 353, 908, 919, 1041
HpyCH4V TGCA 8 cut(s) 284, 328, 333, 580, 638, 839, 872, 1142
HpyF10VI GCNNNNNNNGC 3 cut(s) 485, 602, 940
HpyF3I CTNAG 1 cut(s) 531
HpySE526I ACGT 4 cut(s) 353, 908, 919, 1041
Hsp92I GRCGYC 1 cut(s) 856
Hsp92II CATG 5 cut(s) 660, 729, 863, 997, 1210
KroI GCCGGC 1 cut(s) 23
KroNI GCCGGC 1 cut(s) 25
Ksp22I TGATCA 2 cut(s) 886, 1068
Kzo9I GATC 6 cut(s) 441, 568, 820, 886, 1068, 1197
LmnI GCTCC 3 cut(s) 613, 931, 1187
Lsp1109I GCAGC 5 cut(s) 296, 564, 700, 722, 921
MaeI CTAG 2 cut(s) 717, 1008
MaeII ACGT 4 cut(s) 353, 908, 919, 1041
MaeIII GTNAC 2 cut(s) 119, 455
MalI GATC 6 cut(s) 443, 570, 822, 888, 1070, 1199
MboI GATC 6 cut(s) 441, 568, 820, 886, 1068, 1197
MflI RGATCY 3 cut(s) 441, 568, 820
MluCI AATT 7 cut(s) 131, 343, 600, 622, 827, 1177, 1216
MlyI GAGTC 1 cut(s) 23
MmeI TCCRAC 1 cut(s) 1225
MroNI GCCGGC 1 cut(s) 23
MroXI GAANNNNTTC 1 cut(s) 848
MseI TTAA 5 cut(s) 246, 405, 761, 825, 945
MslI CAYNNNNRTG 3 cut(s) 333, 429, 1157
MspA1I CMGCKG 1 cut(s) 713
MspI CCGG 2 cut(s) 24, 617
MvnI CGCG 1 cut(s) 510
MwoI GCNNNNNNNGC 3 cut(s) 485, 602, 940
NaeI GCCGGC 1 cut(s) 25
NdeII GATC 6 cut(s) 441, 568, 820, 886, 1068, 1197
NgoMIV GCCGGC 1 cut(s) 23
NlaIII CATG 5 cut(s) 660, 729, 863, 997, 1210
NlaIV GGNNCC 3 cut(s) 570, 615, 675
NmeAIII GCCGAG 1 cut(s) 292
NmuCI GTSAC 1 cut(s) 455
NspV TTCGAA 1 cut(s) 1056
OliI CACNNNNGTG 1 cut(s) 429
PdiI GCCGGC 1 cut(s) 25
PdmI GAANNNNTTC 1 cut(s) 848
PfeI GAWTC 2 cut(s) 44, 812
PflMI CCANNNNNTGG 1 cut(s) 1207
PkrI GCNGC 5 cut(s) 286, 579, 712, 715, 936
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
PsiI TTATAA 1 cut(s) 629
Psp1406I AACGTT 1 cut(s) 353
PspFI CCCAGC 2 cut(s) 605, 1092
PspN4I GGNNCC 3 cut(s) 570, 615, 675
PspPI GGNCC 2 cut(s) 36, 84
PsuI RGATCY 3 cut(s) 441, 568, 820
PvuII CAGCTG 1 cut(s) 713
RsaI GTAC 5 cut(s) 33, 721, 907, 1012, 1136
RsaNI GTAC 5 cut(s) 32, 720, 906, 1011, 1135
RseI CAYNNNNRTG 3 cut(s) 333, 429, 1157
Rsr2I CGGWCCG 1 cut(s) 36
RsrII CGGWCCG 1 cut(s) 36
SaqAI TTAA 5 cut(s) 246, 405, 761, 825, 945
SatI GCNGC 5 cut(s) 285, 578, 711, 714, 935
Sau3AI GATC 6 cut(s) 441, 568, 820, 886, 1068, 1197
Sau96I GGNCC 2 cut(s) 36, 84
ScaI AGTACT 2 cut(s) 721, 1012
SchI GAGTC 1 cut(s) 23
SfuI TTCGAA 1 cut(s) 1056
SinI GGWCC 2 cut(s) 36, 84
SmiMI CAYNNNNRTG 3 cut(s) 333, 429, 1157
SmlI CTYRAG 1 cut(s) 1014
SmoI CTYRAG 1 cut(s) 1014
Sse9I AATT 7 cut(s) 131, 343, 600, 622, 827, 1177, 1216
SsiI CCGC 5 cut(s) 39, 175, 206, 644, 1005
SspI AATATT 1 cut(s) 1048
SspMI CTAG 2 cut(s) 717, 1008
StyI CCWWGG 1 cut(s) 1083
TaaI ACNGT 1 cut(s) 110
TaiI ACGT 4 cut(s) 356, 911, 922, 1044
TaqI TCGA 2 cut(s) 183, 1056
TasI AATT 7 cut(s) 131, 343, 600, 622, 827, 1177, 1216
TatI WGTACW 2 cut(s) 719, 1010
TfiI GAWTC 2 cut(s) 44, 812
Tru1I TTAA 5 cut(s) 246, 405, 761, 825, 945
Tru9I TTAA 5 cut(s) 246, 405, 761, 825, 945
TscAI CASTG 3 cut(s) 268, 340, 684
TseFI GTSAC 1 cut(s) 455
TseI GCWGC 5 cut(s) 284, 577, 710, 713, 934
Tsp45I GTSAC 1 cut(s) 455
TspDTI ATGAA 7 cut(s) 69, 216, 233, 519, 645, 714, 869
TspGWI ACGGA 1 cut(s) 49
TspRI CASTG 3 cut(s) 268, 340, 684
Van91I CCANNNNNTGG 1 cut(s) 1207
VpaK11BI GGWCC 2 cut(s) 36, 84
XapI RAATTY 4 cut(s) 131, 622, 827, 1177
XmiI GTMKAC 1 cut(s) 1126
XmnI GAANNNNTTC 1 cut(s) 848
XspI CTAG 2 cut(s) 717, 1008
ZrmI AGTACT 2 cut(s) 721, 1012
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.