Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009381.1

Orthogroup ID

OG0008052

Physical Location & Seq

Genomic Coordinates Forward (+)

34979 .. 37663

Gene Structure 2685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009381.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

atggcttctctggagtcggaggccggctccaaatcctccaatgaaatcaaacagagagccagaaaaaataggaccaagaagaagaagaccaaaaacggtgcgtttcgttacctccccaaatttcggtgctttagtttaaaatcggaaacgactgacgggagtttcgatatggaggtggaggacgaagcgggtcggggaatgaacccgacccaccttgttataatggttaatgggcttataggcagtgccgaggattggaggtatgcagcgacccagtttgtgaagagatacccagaacatgttgttgtgcattgcagtgaatgtaattgttcaaccttgacatttgatggtgtggatgtaatgggagagagattagcagaagaggttaaatctgtaataaaacgccacccaagtgttcagaagatctcgtttgttggtcactcattaggtggccttatagcaaggtatgccattggcaggctttatgaacgcgacacaacaagggaactttctctggaaaatggagaatgtaggggcaatggatttgaggaacagaaagcgaaaagcaaaattgctgggctggagccggtgaattttataacatctgcaactccgcacctcggttcatgggggcataaacaggttccagtgttttgtggctttcaaatccttgaaaaagcagcagctagtacttcatggtgtttaggtagaactggaagccatttgtttttaactgatagggatgaaggaaaacctccccttttacgtcagatggtttatgattctgaagatcttaaattcttatctgcattgaagtccttcaggcgtcatgttgcctatgcaaatgttcattatgatcacctcgtgggatggagtacgtcttctatacgtcgtaagaaggagctgccaaagcttaaacatttatccagagacaacaaatatccgcatattgtaaatgaggacatgataaacaccgctagtactcaagaagaagttgctttggaggacgacgtgaatattgacttcgaagaggaaatgatcagaggtttgaccaaggtgagctgggaaaggattgatgtaagttttagtggaagtagacaaaagtaccttgcacataataccattcaggtgaaaacttattgtatacattctgatggagctgatgtgatccaacacatggtggacaattttcgtatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF676

Protein Analysis

399

Amino Acids

45.21

Weight (kDa)

8.48

Isoelectric Point (pI)

36.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10040 AT1G10040
fragaria_vesca	FvH4_2g35100 FvH4_2g35100 FvH4_2g35100
malus_domestica	MD08G1108500.v1.1 MD15G1089000.v1.1
prunus_persica	Prupe.1G443100_v2.0.a1 Prupe.1G443100_v2.0.a1 Prupe.1G443100_v2.0.a1 Prupe.1G443100_v2.0.a1 Prupe.1G443100_v2.0.a1
pyrus_communis	pycom08g09040 pycom15g08340
rosa_chinensis	RchiOBHm_Chr6g0306871
rosa_laevigata	RLG00000010759
rosa_multiflora	Rmu_sc0009381.1_g000006
rosa_roxburghii	Rroxscaffold_7G00161400
rosa_rugosa	Rorug06G0354000
rosa_samantha	Rh6AG465500 Rh6BG435300 Rh6CG479900 Rh6DG466900
rosa_wichuraiana	Rw6G040570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	221, 599
AccB7I	CCANNNNNTGG	1 cut(s)	1177
AccI	GTMKAC	2 cut(s)	1096, 1144
AccII	CGCG	1 cut(s)	492
AciI	CCGC	4 cut(s)	188, 614, 944, 975
AclWI	GGATC	1 cut(s)	1162
AcsI	RAATTY	3 cut(s)	119, 592, 797
AcuI	CTGAAG	2 cut(s)	805, 807
AcyI	GRCGYC	1 cut(s)	826
AdeI	CACNNNGTG	2 cut(s)	865, 1180
AfaI	GTAC	4 cut(s)	691, 877, 982, 1106
AfiI	CCNNNNNNNGG	5 cut(s)	123, 255, 477, 620, 1177
AflIII	ACRYGT	1 cut(s)	298
AgsI	TTSAA	4 cut(s)	333, 665, 674, 814
AjiI	CACGTC	1 cut(s)	1012
AleI	CACNNNNGTG	1 cut(s)	411
AluBI	AGCT	5 cut(s)	686, 904, 913, 1062, 1160
AluI	AGCT	5 cut(s)	686, 904, 913, 1062, 1160
Alw26I	GTCTC	1 cut(s)	924
AlwI	GGATC	1 cut(s)	1162
AoxI	GGCC	2 cut(s)	21, 451
ApeKI	GCWGC	4 cut(s)	266, 680, 683, 904
ApoI	RAATTY	3 cut(s)	119, 592, 797
ArsI	GACNNNNNNTTYG	2 cut(s)	146, 178
Asp700I	GAANNNNTTC	1 cut(s)	818
AspS9I	GGNCC	1 cut(s)	72
AsuHPI	GGTGA	4 cut(s)	601, 851, 1069, 1141
AsuII	TTCGAA	1 cut(s)	1026
AvaII	GGWCC	1 cut(s)	72
BaeI	ACNNNNGTAYC	2 cut(s)	1088, 1121
BauI	CACGAG	1 cut(s)	863
BbsI	GAAGAC	2 cut(s)	92, 873
BbvI	GCAGC	4 cut(s)	278, 692, 695, 891
BccI	CCATC	4 cut(s)	341, 766, 864, 1148
BclI	TGATCA	2 cut(s)	856, 1038
BcoDI	GTCTC	1 cut(s)	924
BfaI	CTAG	2 cut(s)	687, 978
BglII	AGATCT	2 cut(s)	423, 790
BisI	GCNGC	4 cut(s)	267, 681, 684, 905
BlsI	GCNGC	4 cut(s)	268, 682, 685, 906
BmcAI	AGTACT	2 cut(s)	691, 982
Bme18I	GGWCC	1 cut(s)	72
BmgBI	CACGTC	1 cut(s)	1012
BmgT120I	GGNCC	1 cut(s)	72
BmiI	GGNNCC	3 cut(s)	28, 585, 645
BmrI	ACTGGG	1 cut(s)	268
BmuI	ACTGGG	1 cut(s)	268
BpiI	GAAGAC	2 cut(s)	92, 873
BplI	GAGNNNNNCTC	2 cut(s)	11, 43
BpmI	CTGGAG	2 cut(s)	32, 602
Bpu14I	TTCGAA	1 cut(s)	1026
BpuEI	CTTGAG	1 cut(s)	969
BsaHI	GRCGYC	1 cut(s)	826
BsaJI	CCNNGG	3 cut(s)	249, 619, 1053
BsaXI	ACNNNNNCTCC	2 cut(s)	1149, 1179
Bsc4I	CCNNNNNNNGG	5 cut(s)	123, 255, 477, 620, 1177
Bse118I	RCCGGY	2 cut(s)	23, 586
Bse1I	ACTGG	3 cut(s)	274, 647, 718
Bse3DI	GCAATG	2 cut(s)	310, 544
BseDI	CCNNGG	3 cut(s)	249, 619, 1053
BseGI	GGATG	3 cut(s)	361, 748, 875
BseLI	CCNNNNNNNGG	5 cut(s)	123, 255, 477, 620, 1177
BseMI	GCAATG	2 cut(s)	310, 544
BseNI	ACTGG	3 cut(s)	274, 647, 718
BseXI	GCAGC	4 cut(s)	278, 692, 695, 891
BseYI	CCCAGC	2 cut(s)	575, 1062
Bsh1236I	CGCG	1 cut(s)	492
BshFI	GGCC	2 cut(s)	23, 453
BsiSI	CCGG	2 cut(s)	24, 587
BslI	CCNNNNNNNGG	5 cut(s)	123, 255, 477, 620, 1177
BsmAI	GTCTC	1 cut(s)	924
BsnI	GGCC	2 cut(s)	23, 453
Bsp119I	TTCGAA	1 cut(s)	1026
Bsp143I	GATC	5 cut(s)	423, 790, 856, 1038, 1167
BspACI	CCGC	4 cut(s)	188, 614, 944, 975
BspANI	GGCC	2 cut(s)	23, 453
BspFNI	CGCG	1 cut(s)	492
BspLI	GGNNCC	3 cut(s)	28, 585, 645
BspPI	GGATC	1 cut(s)	1162
BspT104I	TTCGAA	1 cut(s)	1026
BsrDI	GCAATG	2 cut(s)	310, 544
BsrFI	RCCGGY	2 cut(s)	23, 586
BsrI	ACTGG	3 cut(s)	274, 647, 718
BssAI	RCCGGY	2 cut(s)	23, 586
BssECI	CCNNGG	3 cut(s)	249, 619, 1053
BssMI	GATC	5 cut(s)	423, 790, 856, 1038, 1167
BssNAI	GTATAC	1 cut(s)	1145
BssNI	GRCGYC	1 cut(s)	826
BssSI	CACGAG	1 cut(s)	863
BssT1I	CCWWGG	1 cut(s)	1053
Bst1107I	GTATAC	1 cut(s)	1145
Bst2BI	CACGAG	1 cut(s)	863
Bst4CI	ACNGT	1 cut(s)	98
Bst6I	CTCTTC	3 cut(s)	278, 375, 1023
BstACI	GRCGYC	1 cut(s)	826
BstAPI	GCANNNNNTGC	1 cut(s)	467
BstBI	TTCGAA	1 cut(s)	1026
BstC8I	GCNNGC	2 cut(s)	25, 479
BstF5I	GGATG	3 cut(s)	361, 748, 875
BstFNI	CGCG	1 cut(s)	492
BstKTI	GATC	5 cut(s)	426, 793, 859, 1041, 1170
BstMAI	GTCTC	1 cut(s)	924
BstMBI	GATC	5 cut(s)	423, 790, 856, 1038, 1167
BstMWI	GCNNNNNNNGC	2 cut(s)	467, 910
BstNSI	RCATGY	1 cut(s)	302
BstUI	CGCG	1 cut(s)	492
BstV1I	GCAGC	4 cut(s)	278, 692, 695, 891
BstV2I	GAAGAC	2 cut(s)	92, 873
BstX2I	RGATCY	2 cut(s)	423, 790
BstYI	RGATCY	2 cut(s)	423, 790
BstZ17I	GTATAC	1 cut(s)	1145
BsuRI	GGCC	2 cut(s)	23, 453
BtrI	CACGTC	1 cut(s)	1012
BtsCI	GGATG	3 cut(s)	361, 748, 875
BtsI	GCAGTG	2 cut(s)	250, 322
BtsIMutI	CAGTG	3 cut(s)	250, 322, 654
Cac8I	GCNNGC	2 cut(s)	25, 479
Cfr10I	RCCGGY	2 cut(s)	23, 586
Cfr13I	GGNCC	1 cut(s)	72
CseI	GACGC	1 cut(s)	815
Csp6I	GTAC	4 cut(s)	690, 876, 981, 1105
CviAII	CATG	6 cut(s)	299, 627, 696, 830, 964, 1177
CviQI	GTAC	4 cut(s)	690, 876, 981, 1105
DpnI	GATC	5 cut(s)	425, 792, 858, 1040, 1169
DpnII	GATC	5 cut(s)	423, 790, 856, 1038, 1167
DraI	TTTAAA	1 cut(s)	138
DraIII	CACNNNGTG	2 cut(s)	865, 1180
Eam1104I	CTCTTC	3 cut(s)	278, 375, 1023
EarI	CTCTTC	3 cut(s)	278, 375, 1023
Eco130I	CCWWGG	1 cut(s)	1053
Eco47I	GGWCC	1 cut(s)	72
Eco57I	CTGAAG	2 cut(s)	805, 807
EcoT14I	CCWWGG	1 cut(s)	1053
ErhI	CCWWGG	1 cut(s)	1053
FaeI	CATG	6 cut(s)	302, 630, 699, 833, 967, 1180
FatI	CATG	6 cut(s)	298, 626, 695, 829, 963, 1176
FauI	CCCGC	1 cut(s)	181
FbaI	TGATCA	2 cut(s)	856, 1038
FblI	GTMKAC	2 cut(s)	1096, 1144
Fnu4HI	GCNGC	4 cut(s)	267, 681, 684, 905
FokI	GGATG	3 cut(s)	368, 755, 882
Fsp4HI	GCNGC	4 cut(s)	267, 681, 684, 905
FspBI	CTAG	2 cut(s)	687, 978
GluI	GCNGC	4 cut(s)	267, 681, 684, 905
GsaI	CCCAGC	2 cut(s)	579, 1066
GsuI	CTGGAG	2 cut(s)	32, 602
HaeIII	GGCC	2 cut(s)	23, 453
HapII	CCGG	2 cut(s)	24, 587
HgaI	GACGC	1 cut(s)	815
Hin1I	GRCGYC	1 cut(s)	826
Hin1II	CATG	6 cut(s)	302, 630, 699, 833, 967, 1180
HindIII	AAGCTT	1 cut(s)	911
HinfI	GANTC	2 cut(s)	14, 782
HpaII	CCGG	2 cut(s)	24, 587
HphI	GGTGA	4 cut(s)	601, 851, 1069, 1141
Hpy166II	GTNNAC	3 cut(s)	1097, 1145, 1183
Hpy188I	TCNGA	7 cut(s)	19, 145, 420, 771, 787, 1043, 1153
Hpy188III	TCNNGA	4 cut(s)	11, 515, 927, 986
Hpy8I	GTNNAC	3 cut(s)	1097, 1145, 1183
Hpy99I	CGWCG	2 cut(s)	894, 1013
HpyAV	CCTTC	3 cut(s)	740, 829, 892
HpyCH4III	ACNGT	1 cut(s)	98
HpyCH4IV	ACGT	4 cut(s)	766, 878, 889, 1011
HpyCH4V	TGCA	7 cut(s)	266, 310, 315, 608, 809, 842, 1112
HpyF10VI	GCNNNNNNNGC	2 cut(s)	467, 910
HpySE526I	ACGT	4 cut(s)	766, 878, 889, 1011
Hsp92I	GRCGYC	1 cut(s)	826
Hsp92II	CATG	6 cut(s)	302, 630, 699, 833, 967, 1180
KroI	GCCGGC	1 cut(s)	23
KroNI	GCCGGC	1 cut(s)	25
Ksp22I	TGATCA	2 cut(s)	856, 1038
Kzo9I	GATC	5 cut(s)	423, 790, 856, 1038, 1167
LmnI	GCTCC	4 cut(s)	32, 583, 901, 1157
Lsp1109I	GCAGC	4 cut(s)	278, 692, 695, 891
MaeI	CTAG	2 cut(s)	687, 978
MaeII	ACGT	4 cut(s)	766, 878, 889, 1011
MaeIII	GTNAC	2 cut(s)	107, 437
MalI	GATC	5 cut(s)	425, 792, 858, 1040, 1169
MboI	GATC	5 cut(s)	423, 790, 856, 1038, 1167
MflI	RGATCY	2 cut(s)	423, 790
MluCI	AATT	6 cut(s)	119, 325, 570, 592, 797, 1186
MlyI	GAGTC	1 cut(s)	23
MmeI	TCCRAC	1 cut(s)	1195
MroNI	GCCGGC	1 cut(s)	23
MroXI	GAANNNNTTC	1 cut(s)	818
MseI	TTAA	6 cut(s)	137, 228, 387, 731, 795, 915
MslI	CAYNNNNRTG	4 cut(s)	315, 411, 1127, 1152
MspI	CCGG	2 cut(s)	24, 587
MvnI	CGCG	1 cut(s)	492
MwoI	GCNNNNNNNGC	2 cut(s)	467, 910
NaeI	GCCGGC	1 cut(s)	25
NdeII	GATC	5 cut(s)	423, 790, 856, 1038, 1167
NgoMIV	GCCGGC	1 cut(s)	23
NlaIII	CATG	6 cut(s)	302, 630, 699, 833, 967, 1180
NlaIV	GGNNCC	3 cut(s)	28, 585, 645
NmeAIII	GCCGAG	1 cut(s)	274
NmuCI	GTSAC	1 cut(s)	437
NspI	RCATGY	1 cut(s)	302
NspV	TTCGAA	1 cut(s)	1026
OliI	CACNNNNGTG	1 cut(s)	411
PciI	ACATGT	1 cut(s)	298
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PdiI	GCCGGC	1 cut(s)	25
PdmI	GAANNNNTTC	1 cut(s)	818
PfeI	GAWTC	1 cut(s)	782
PflMI	CCANNNNNTGG	1 cut(s)	1177
PkrI	GCNGC	4 cut(s)	268, 682, 685, 906
PleI	GAGTC	1 cut(s)	22
PpsI	GAGTC	1 cut(s)	22
PscI	ACATGT	1 cut(s)	298
PsiI	TTATAA	2 cut(s)	221, 599
PspFI	CCCAGC	2 cut(s)	575, 1062
PspN4I	GGNNCC	3 cut(s)	28, 585, 645
PspPI	GGNCC	1 cut(s)	72
PsuI	RGATCY	2 cut(s)	423, 790
RsaI	GTAC	4 cut(s)	691, 877, 982, 1106
RsaNI	GTAC	4 cut(s)	690, 876, 981, 1105
RseI	CAYNNNNRTG	4 cut(s)	315, 411, 1127, 1152
SaqAI	TTAA	6 cut(s)	137, 228, 387, 731, 795, 915
SatI	GCNGC	4 cut(s)	267, 681, 684, 905
Sau3AI	GATC	5 cut(s)	423, 790, 856, 1038, 1167
Sau96I	GGNCC	1 cut(s)	72
ScaI	AGTACT	2 cut(s)	691, 982
SchI	GAGTC	1 cut(s)	23
SfuI	TTCGAA	1 cut(s)	1026
SinI	GGWCC	1 cut(s)	72
SmiMI	CAYNNNNRTG	4 cut(s)	315, 411, 1127, 1152
SmlI	CTYRAG	1 cut(s)	984
SmoI	CTYRAG	1 cut(s)	984
Sse9I	AATT	6 cut(s)	119, 325, 570, 592, 797, 1186
SsiI	CCGC	4 cut(s)	188, 614, 944, 975
SspI	AATATT	1 cut(s)	1018
SspMI	CTAG	2 cut(s)	687, 978
StyI	CCWWGG	1 cut(s)	1053
TaaI	ACNGT	1 cut(s)	98
TaiI	ACGT	4 cut(s)	769, 881, 892, 1014
TaqI	TCGA	2 cut(s)	165, 1026
TasI	AATT	6 cut(s)	119, 325, 570, 592, 797, 1186
TatI	WGTACW	2 cut(s)	689, 980
TfiI	GAWTC	1 cut(s)	782
Tru1I	TTAA	6 cut(s)	137, 228, 387, 731, 795, 915
Tru9I	TTAA	6 cut(s)	137, 228, 387, 731, 795, 915
TscAI	CASTG	3 cut(s)	250, 322, 654
TseFI	GTSAC	1 cut(s)	437
TseI	GCWGC	4 cut(s)	266, 680, 683, 904
Tsp45I	GTSAC	1 cut(s)	437
TspDTI	ATGAA	7 cut(s)	57, 215, 501, 615, 684, 759, 839
TspRI	CASTG	3 cut(s)	250, 322, 654
Van91I	CCANNNNNTGG	1 cut(s)	1177
VpaK11BI	GGWCC	1 cut(s)	72
XapI	RAATTY	3 cut(s)	119, 592, 797
XceI	RCATGY	1 cut(s)	302
XmiI	GTMKAC	2 cut(s)	1096, 1144
XmnI	GAANNNNTTC	1 cut(s)	818
XspI	CTAG	2 cut(s)	687, 978
ZrmI	AGTACT	2 cut(s)	691, 982

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.