Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0008052

Physical Location & Seq

Genomic Coordinates Reverse (-)

7301221 .. 7304418

Gene Structure 3198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g09040.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGGCGGGGATGGATGTGGAGATCGGCGGCGATGGAGTCGTGCGGACTGAGGAGCCGCCTCGGAACGAGATGAAGCACAGAGGGAGCAAGAAAAACGCGGGGAAAAAGAAAAGGAGCAAAACCAAGGTGACGATGACGACGAGCGGAAAAAAAGAAACGTTTTCTTACATGCCCAAATTTCGGTGTTTCAGATCGAAACCCGAAACGGATAAGAATGGGGGTTTCGATATGGAGGTGGAGGATCAAACGGGTGAAAAAATGAGTCCGACCCATTTGATTATTTTGGTGAATGGTCTCATCGGCAGTGCTGAGAATTGGAAATATGGAGCAAAGGAGTTTCTGAAGAGATACCCAGAAGATGTTGTTGCTCACTGCAGTGAATGCAATTCTTCAATGTTAACATTTGATGGTGTTGATGTGATGGGAGAGAGATTAGCGGAAGAGGTTATTTCTGTGATAAAACGTCACCCGAGTGTACAGAAGATCTCGTTTGTTGGTCATTCGTTAGGTGGGCTTATAGCAAGATATGCCATTGGAAGGCTCTATGAACGAGACATCACCGGAGAACTATGTCAAGAAAATGGAGAATATAGGAGAGATGGAGTTGAGGATCCGTTGCTGAAACAAAAAGTCAAAGGCAAAATTGCTGGACTGGAGCCCATGAATTTTATAACGTCCGCAACTCCGCACCTTGGTTCCTGGGGGCATAATCAGGTTCCAGTGTTTTGTGGGGTAAAACCCCTTGAAAAGGTAGCGGCTCGTACTTCATGGTGTCTAGGTAGAAGTGGAAGACATCTGTTTTTAACTGATAGGAATGATGGAAAACCTCCCCTTCTTCTTCAGATGGTCCATGACACTGAAGATCTCAAATTCATATCAGCACTGCAGTCCTTCAAGCGCCGTGTTGCCTATGCAAATGTTCGATTTGATCACCTTGTGGGATGGAGTACATCATCTCTGCGGCGTAAGAAGGAGCTGCCAAAGCTTAAAAATTTATCCAGAGATGACAAATATCGACATATTGTAAATGTGGAGACAATTAAAAGTCCAAGTCCTCAAGAAGAATTACCGTTGGAAGCCATAGCCAGTGGGCGCAAGAAAATTGACTTTGAAGAAGAAATGATCAGAAACTTGACCAAAATGAGCTGGGAACGGGTGGATGTGAACTTCAGCGGAAGTAAACAGAGATACCTTGCACACAGTACCATTCAGGTGAAAAACACTTGTCTACACTCTGATGGGGCTGATGTGATCCAACACATGGTTGACAATTTTCTTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF676

Protein Analysis

428

Amino Acids

48.27

Weight (kDa)

9.21

Isoelectric Point (pI)

43.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10040 AT1G10040
fragaria_vesca	FvH4_2g35100 FvH4_2g35100 FvH4_2g35100
malus_domestica	MD08G1108500.v1.1 MD15G1089000.v1.1
prunus_persica	Prupe.1G443100_v2.0.a1 Prupe.1G443100_v2.0.a1 Prupe.1G443100_v2.0.a1 Prupe.1G443100_v2.0.a1 Prupe.1G443100_v2.0.a1
pyrus_communis	pycom08g09040 pycom15g08340
rosa_chinensis	RchiOBHm_Chr6g0306871
rosa_laevigata	RLG00000010759
rosa_multiflora	Rmu_sc0009381.1_g000006
rosa_roxburghii	Rroxscaffold_7G00161400
rosa_rugosa	Rorug06G0354000
rosa_samantha	Rh6AG465500 Rh6BG435300 Rh6CG479900 Rh6DG466900
rosa_wichuraiana	Rw6G040570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	671
AccB7I	CCANNNNNTGG	1 cut(s)	1261
AccBSI	CCGCTC	1 cut(s)	144
AccI	GTMKAC	1 cut(s)	1228
AccII	CGCG	1 cut(s)	98
AclI	AACGTT	1 cut(s)	158
AclWI	GGATC	4 cut(s)	249, 605, 618, 1246
AcsI	RAATTY	4 cut(s)	176, 664, 869, 991
AcuI	CTGAAG	4 cut(s)	362, 824, 879, 1153
AdeI	CACNNNGTG	1 cut(s)	937
AfaI	GTAC	4 cut(s)	477, 763, 949, 1204
AfiI	CCNNNNNNNGG	5 cut(s)	180, 537, 692, 748, 1261
AgsI	TTSAA	4 cut(s)	393, 746, 895, 1112
AjnI	CCWGG	1 cut(s)	698
AleI	CACNNNNGTG	2 cut(s)	375, 471
AluBI	AGCT	3 cut(s)	976, 985, 1146
AluI	AGCT	3 cut(s)	976, 985, 1146
Alw26I	GTCTC	3 cut(s)	299, 546, 1028
AlwI	GGATC	4 cut(s)	249, 605, 618, 1246
Ama87I	CYCGRG	1 cut(s)	469
ApeKI	GCWGC	1 cut(s)	976
ApoI	RAATTY	4 cut(s)	176, 664, 869, 991
AspLEI	GCGC	2 cut(s)	900, 1095
AspS9I	GGNCC	1 cut(s)	847
AsuHPI	GGTGA	7 cut(s)	139, 263, 298, 458, 550, 923, 1225
AvaI	CYCGRG	1 cut(s)	469
AvaII	GGWCC	1 cut(s)	847
BamHI	GGATCC	1 cut(s)	610
BanII	GRGCYC	1 cut(s)	660
BbsI	GAAGAC	1 cut(s)	796
BbvI	GCAGC	1 cut(s)	963
BccI	CCATC	9 cut(s)	4, 26, 401, 415, 593, 812, 838, 936, 1232
BceAI	ACGGC	1 cut(s)	885
BciT130I	CCWGG	1 cut(s)	700
BclI	TGATCA	2 cut(s)	928, 1122
BcoDI	GTCTC	3 cut(s)	299, 546, 1028
BfaI	CTAG	1 cut(s)	776
BfmI	CTRYAG	2 cut(s)	373, 884
BfoI	RGCGCY	1 cut(s)	901
BglII	AGATCT	2 cut(s)	483, 862
BisI	GCNGC	5 cut(s)	28, 56, 756, 962, 977
BlsI	GCNGC	5 cut(s)	29, 57, 757, 963, 978
Bme1390I	CCNGG	1 cut(s)	700
Bme18I	GGWCC	1 cut(s)	847
BmeT110I	CYCGRG	1 cut(s)	469
BmgT120I	GGNCC	1 cut(s)	847
BmiI	GGNNCC	5 cut(s)	54, 612, 657, 697, 717
BmrFI	CCNGG	1 cut(s)	700
BpiI	GAAGAC	1 cut(s)	796
BpmI	CTGGAG	1 cut(s)	674
BpuEI	CTTGAG	1 cut(s)	1041
BsaI	GGTCTC	1 cut(s)	299
BsaJI	CCNNGG	4 cut(s)	59, 123, 691, 699
BsaWI	WCCGGW	1 cut(s)	560
Bsc4I	CCNNNNNNNGG	5 cut(s)	180, 537, 692, 748, 1261
Bse1I	ACTGG	3 cut(s)	657, 719, 1086
BseBI	CCWGG	1 cut(s)	700
BseDI	CCNNGG	4 cut(s)	59, 123, 691, 699
BseGI	GGATG	4 cut(s)	15, 19, 947, 1165
BseLI	CCNNNNNNNGG	5 cut(s)	180, 537, 692, 748, 1261
BseMII	CTCAG	2 cut(s)	39, 300
BseNI	ACTGG	3 cut(s)	657, 719, 1086
BseRI	GAGGAG	1 cut(s)	65
BseXI	GCAGC	1 cut(s)	963
BseYI	CCCAGC	1 cut(s)	1146
Bsh1236I	CGCG	1 cut(s)	98
BsiHKCI	CYCGRG	1 cut(s)	469
BsiSI	CCGG	1 cut(s)	561
BslI	CCNNNNNNNGG	5 cut(s)	180, 537, 692, 748, 1261
BsmAI	GTCTC	3 cut(s)	299, 546, 1028
BsmI	GAATGC	1 cut(s)	386
Bso31I	GGTCTC	1 cut(s)	299
BsoBI	CYCGRG	1 cut(s)	469
Bsp1286I	GDGCHC	1 cut(s)	660
Bsp1407I	TGTACA	1 cut(s)	475
Bsp143I	GATC	9 cut(s)	21, 191, 241, 483, 610, 862, 928, 1122, 1251
BspCNI	CTCAG	2 cut(s)	40, 301
BspFNI	CGCG	1 cut(s)	98
BspLI	GGNNCC	5 cut(s)	54, 612, 657, 697, 717
BspMAI	CTGCAG	2 cut(s)	377, 888
BspPI	GGATC	4 cut(s)	249, 605, 618, 1246
BspTNI	GGTCTC	1 cut(s)	299
BsrBI	CCGCTC	1 cut(s)	144
BsrGI	TGTACA	1 cut(s)	475
BsrI	ACTGG	3 cut(s)	657, 719, 1086
BssECI	CCNNGG	4 cut(s)	59, 123, 691, 699
BssMI	GATC	9 cut(s)	21, 191, 241, 483, 610, 862, 928, 1122, 1251
BssT1I	CCWWGG	2 cut(s)	123, 691
Bst2UI	CCWGG	1 cut(s)	700
Bst4CI	ACNGT	2 cut(s)	1071, 1202
Bst6I	CTCTTC	2 cut(s)	338, 435
BstAPI	GCANNNNNTGC	2 cut(s)	381, 527
BstAUI	TGTACA	1 cut(s)	475
BstDEI	CTNAG	2 cut(s)	48, 309
BstENI	CCTNNNNNAGG	1 cut(s)	746
BstF5I	GGATG	4 cut(s)	15, 19, 947, 1165
BstFNI	CGCG	1 cut(s)	98
BstH2I	RGCGCY	1 cut(s)	901
BstHHI	GCGC	2 cut(s)	900, 1095
BstKTI	GATC	9 cut(s)	24, 194, 244, 486, 613, 865, 931, 1125, 1254
BstMAI	GTCTC	3 cut(s)	299, 546, 1028
BstMBI	GATC	9 cut(s)	21, 191, 241, 483, 610, 862, 928, 1122, 1251
BstMWI	GCNNNNNNNGC	3 cut(s)	381, 527, 982
BstNI	CCWGG	1 cut(s)	700
BstNSI	RCATGY	1 cut(s)	172
BstSCI	CCNGG	1 cut(s)	698
BstSFI	CTRYAG	2 cut(s)	373, 884
BstUI	CGCG	1 cut(s)	98
BstV1I	GCAGC	1 cut(s)	963
BstV2I	GAAGAC	1 cut(s)	796
BstX2I	RGATCY	3 cut(s)	483, 610, 862
BstYI	RGATCY	3 cut(s)	483, 610, 862
BtgZI	GCGATG	1 cut(s)	45
BtsCI	GGATG	4 cut(s)	15, 19, 947, 1165
BtsI	GCAGTG	4 cut(s)	310, 370, 382, 881
BtsIMutI	CAGTG	7 cut(s)	310, 370, 382, 726, 855, 881, 1093
CfoI	GCGC	2 cut(s)	900, 1095
Cfr13I	GGNCC	1 cut(s)	847
Csp6I	GTAC	4 cut(s)	476, 762, 948, 1203
CviAII	CATG	5 cut(s)	169, 661, 768, 851, 1261
CviQI	GTAC	4 cut(s)	476, 762, 948, 1203
DdeI	CTNAG	2 cut(s)	48, 309
DpnI	GATC	9 cut(s)	23, 193, 243, 485, 612, 864, 930, 1124, 1253
DpnII	GATC	9 cut(s)	21, 191, 241, 483, 610, 862, 928, 1122, 1251
DraIII	CACNNNGTG	1 cut(s)	937
Eam1104I	CTCTTC	2 cut(s)	338, 435
EarI	CTCTTC	2 cut(s)	338, 435
Eco130I	CCWWGG	2 cut(s)	123, 691
Eco24I	GRGCYC	1 cut(s)	660
Eco31I	GGTCTC	1 cut(s)	299
Eco47I	GGWCC	1 cut(s)	847
Eco57I	CTGAAG	4 cut(s)	362, 824, 879, 1153
Eco88I	CYCGRG	1 cut(s)	469
EcoNI	CCTNNNNNAGG	1 cut(s)	746
EcoRII	CCWGG	1 cut(s)	698
EcoT14I	CCWWGG	2 cut(s)	123, 691
EcoT38I	GRGCYC	1 cut(s)	660
ErhI	CCWWGG	2 cut(s)	123, 691
FaeI	CATG	5 cut(s)	172, 664, 771, 854, 1264
FatI	CATG	5 cut(s)	168, 660, 767, 850, 1260
FauI	CCCGC	1 cut(s)	91
FbaI	TGATCA	2 cut(s)	928, 1122
FblI	GTMKAC	1 cut(s)	1228
Fnu4HI	GCNGC	5 cut(s)	28, 56, 756, 962, 977
FokI	GGATG	4 cut(s)	22, 26, 954, 1172
FriOI	GRGCYC	1 cut(s)	660
Fsp4HI	GCNGC	5 cut(s)	28, 56, 756, 962, 977
FspBI	CTAG	1 cut(s)	776
GlaI	GCGC	2 cut(s)	899, 1094
GluI	GCNGC	5 cut(s)	28, 56, 756, 962, 977
GsaI	CCCAGC	1 cut(s)	1150
GsuI	CTGGAG	1 cut(s)	674
HaeII	RGCGCY	1 cut(s)	901
HapII	CCGG	1 cut(s)	561
HhaI	GCGC	2 cut(s)	900, 1095
Hin1II	CATG	5 cut(s)	172, 664, 771, 854, 1264
Hin6I	GCGC	2 cut(s)	898, 1093
HinP1I	GCGC	2 cut(s)	898, 1093
HincII	GTYRAC	2 cut(s)	399, 1267
HindII	GTYRAC	2 cut(s)	399, 1267
HindIII	AAGCTT	1 cut(s)	983
HinfI	GANTC	2 cut(s)	36, 262
HpaI	GTTAAC	1 cut(s)	399
HpaII	CCGG	1 cut(s)	561
HphI	GGTGA	7 cut(s)	139, 263, 298, 458, 550, 923, 1225
Hpy166II	GTNNAC	6 cut(s)	399, 476, 1165, 1181, 1229, 1267
Hpy188I	TCNGA	7 cut(s)	63, 191, 267, 342, 843, 1127, 1237
Hpy188III	TCNNGA	3 cut(s)	575, 999, 1058
Hpy8I	GTNNAC	6 cut(s)	399, 476, 1165, 1181, 1229, 1267
Hpy99I	CGWCG	1 cut(s)	142
HpyAV	CCTTC	4 cut(s)	531, 842, 901, 964
HpyCH4III	ACNGT	2 cut(s)	1071, 1202
HpyCH4IV	ACGT	3 cut(s)	158, 463, 674
HpyCH4V	TGCA	5 cut(s)	375, 384, 886, 914, 1196
HpyF10VI	GCNNNNNNNGC	3 cut(s)	381, 527, 982
HpyF3I	CTNAG	2 cut(s)	48, 309
HpySE526I	ACGT	3 cut(s)	158, 463, 674
Hsp92II	CATG	5 cut(s)	172, 664, 771, 854, 1264
HspAI	GCGC	2 cut(s)	898, 1093
Ksp22I	TGATCA	2 cut(s)	928, 1122
KspAI	GTTAAC	1 cut(s)	399
Kzo9I	GATC	9 cut(s)	21, 191, 241, 483, 610, 862, 928, 1122, 1251
LmnI	GCTCC	6 cut(s)	52, 84, 114, 326, 655, 973
Lsp1109I	GCAGC	1 cut(s)	963
MaeI	CTAG	1 cut(s)	776
MaeII	ACGT	3 cut(s)	158, 463, 674
MaeIII	GTNAC	2 cut(s)	127, 464
MalI	GATC	9 cut(s)	23, 193, 243, 485, 612, 864, 930, 1124, 1253
MbiI	CCGCTC	1 cut(s)	144
MboI	GATC	9 cut(s)	21, 191, 241, 483, 610, 862, 928, 1122, 1251
MflI	RGATCY	3 cut(s)	483, 610, 862
MhlI	GDGCHC	1 cut(s)	660
MlyI	GAGTC	2 cut(s)	45, 271
MmeI	TCCRAC	3 cut(s)	290, 1053, 1279
MnlI	CCTC	9 cut(s)	43, 69, 74, 226, 232, 436, 601, 837, 1065
MseI	TTAA	4 cut(s)	398, 803, 987, 1041
MslI	CAYNNNNRTG	4 cut(s)	375, 471, 1211, 1236
MspA1I	CMGCKG	1 cut(s)	1173
MspI	CCGG	1 cut(s)	561
MspR9I	CCNGG	1 cut(s)	700
Mva1269I	GAATGC	1 cut(s)	386
MvaI	CCWGG	1 cut(s)	700
MvnI	CGCG	1 cut(s)	98
MwoI	GCNNNNNNNGC	3 cut(s)	381, 527, 982
NdeII	GATC	9 cut(s)	21, 191, 241, 483, 610, 862, 928, 1122, 1251
NlaIII	CATG	5 cut(s)	172, 664, 771, 854, 1264
NlaIV	GGNNCC	5 cut(s)	54, 612, 657, 697, 717
NmuCI	GTSAC	2 cut(s)	127, 464
NspI	RCATGY	1 cut(s)	172
OliI	CACNNNNGTG	2 cut(s)	375, 471
PcsI	WCGNNNNNNNCGW	1 cut(s)	137
PctI	GAATGC	1 cut(s)	386
PflMI	CCANNNNNTGG	1 cut(s)	1261
PkrI	GCNGC	5 cut(s)	29, 57, 757, 963, 978
PleI	GAGTC	2 cut(s)	44, 270
PpsI	GAGTC	2 cut(s)	44, 270
PsiI	TTATAA	1 cut(s)	671
Psp1406I	AACGTT	1 cut(s)	158
Psp6I	CCWGG	1 cut(s)	698
PspFI	CCCAGC	1 cut(s)	1146
PspGI	CCWGG	1 cut(s)	698
PspN4I	GGNNCC	5 cut(s)	54, 612, 657, 697, 717
PspPI	GGNCC	1 cut(s)	847
PstI	CTGCAG	2 cut(s)	377, 888
PsuI	RGATCY	3 cut(s)	483, 610, 862
RsaI	GTAC	4 cut(s)	477, 763, 949, 1204
RsaNI	GTAC	4 cut(s)	476, 762, 948, 1203
RseI	CAYNNNNRTG	4 cut(s)	375, 471, 1211, 1236
SaqAI	TTAA	4 cut(s)	398, 803, 987, 1041
SatI	GCNGC	5 cut(s)	28, 56, 756, 962, 977
Sau3AI	GATC	9 cut(s)	21, 191, 241, 483, 610, 862, 928, 1122, 1251
Sau96I	GGNCC	1 cut(s)	847
SchI	GAGTC	2 cut(s)	45, 271
ScrFI	CCNGG	1 cut(s)	700
SduI	GDGCHC	1 cut(s)	660
SfcI	CTRYAG	2 cut(s)	373, 884
SinI	GGWCC	1 cut(s)	847
SmiMI	CAYNNNNRTG	4 cut(s)	375, 471, 1211, 1236
SmlI	CTYRAG	1 cut(s)	1056
SmoI	CTYRAG	1 cut(s)	1056
SspMI	CTAG	1 cut(s)	776
StyD4I	CCNGG	1 cut(s)	698
StyI	CCWWGG	2 cut(s)	123, 691
TaaI	ACNGT	2 cut(s)	1071, 1202
TaiI	ACGT	3 cut(s)	161, 466, 677
TaqI	TCGA	4 cut(s)	194, 225, 922, 1015
TatI	WGTACW	2 cut(s)	475, 947
TauI	GCSGC	4 cut(s)	30, 58, 758, 964
Tru1I	TTAA	4 cut(s)	398, 803, 987, 1041
Tru9I	TTAA	4 cut(s)	398, 803, 987, 1041
TscAI	CASTG	7 cut(s)	310, 377, 382, 726, 862, 888, 1093
TseFI	GTSAC	2 cut(s)	127, 464
TseI	GCWGC	1 cut(s)	976
Tsp45I	GTSAC	2 cut(s)	127, 464
TspDTI	ATGAA	5 cut(s)	86, 561, 677, 756, 862
TspGWI	ACGGA	2 cut(s)	221, 603
TspRI	CASTG	7 cut(s)	310, 377, 382, 726, 862, 888, 1093
Van91I	CCANNNNNTGG	1 cut(s)	1261
VpaK11BI	GGWCC	1 cut(s)	847
XagI	CCTNNNNNAGG	1 cut(s)	746
XapI	RAATTY	4 cut(s)	176, 664, 869, 991
XceI	RCATGY	1 cut(s)	172
XmiI	GTMKAC	1 cut(s)	1228
XspI	CTAG	1 cut(s)	776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.