Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008052

Physical Location & Seq

Genomic Coordinates Reverse (-)

37571889 .. 37577196

Gene Structure 5308 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G443100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGGCTTCCATGGAGATGGAGATCGACGGTTCTGGAATTGTATCTTCCAATGAGATCAAGCAGAGAGGCAAGAAAAACATCGTGAGGAAGAAAAAGAACAAGAGCAAAAGGACGAGCACAAAAGAAACGTTTCATTACCTGCCAAAGTTTCGGTGTTTCAGCTTGAAATCTGAAACGGACGGGAAGGGGAATTTTGATATGGAGGTTGAGGATGAAGGGCGTGGGAAAATGACTCCTACCCATCTTATTATAATGGTGAATGGTCTTATAGGCAGTGCTCAGAATTGGAAATATGCAGCAAAACAGTTTCTCAAGAGATACCCAGAAGATGTTATTGTTCACTGCAGTGAATGCAATTGCTCAATGCTGACATTTGATGGGGTTGATGTAATGGGGGAGAGATTAGCAGAAGAGGTTATTTCCGTCATAAAACGCCACCCAAGTGTTCAGAAGATCTCGTTTGTTGGTCATTCATTAGGCGGCCTTATAGCAAGGTACGCCATTGGCAGGCTCTATGAAAGAGACCTCACGAGGGAACAATCTCAGGAAAATGGAGAATGTAGGAGTGATGGAGTTGAGGATCCATTGCTGGAGCACAAAGTCAAAGGCAAAATTGCTGGACTGGAGCCTGTGAATTTTATAACCTCTGCAACTCCGCACCTTGGTACCAGGGGGCATAAACAGGTTCCAGTGTTTTGTGGCTTTCAACCCCTGGAAAAAGTAGCAGCTCGTACCTCATGGTGTCTAGGTAGAAGTGGAAGACATCTGTTTTTAACTGATAGGGATAAAGGAAAACCTCCCCTTCTTATTCAGATGGTCAATGATACCGAAGATCTTAATTTCTTATCTGCATTGCAGTCCTTCAGGCGTCGTGTTGCCTATGCAAATGTTCTCCATGACCACCTTGTCGGATGGAGTACATCATCTCTACGGCGTAGGAAGGAGCTGCCAAAGCTTAAACATTTATCCAAAGATGACAAATATCCACATATTGTGAATGTGAAGACAATAAAAACTGACAGTACTCAAGAAGAAGTATCTTTCGAAGCGAAAGCCAGTGGATGCAAGCATATTGACTTGGAAGAGGAAATGATCAGAAGCTTGACCAAAATGAGCTGGGAACGGGTTGATGTGAGCTTCAAAGGAAGTAAGCAAAGATACCTTGCGCACAGTACCATTCAGGTGAAAACCTATTATCTACATTCTGATGGGGCTGATGTGATCCAACACATGGTTGACAACTTTGTTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF676

Protein Analysis

418

Amino Acids

47.36

Weight (kDa)

9.17

Isoelectric Point (pI)

43.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10040 AT1G10040
fragaria_vesca	FvH4_2g35100 FvH4_2g35100 FvH4_2g35100
malus_domestica	MD08G1108500.v1.1 MD15G1089000.v1.1
prunus_persica	Prupe.1G443100_v2.0.a1 Prupe.1G443100_v2.0.a1 Prupe.1G443100_v2.0.a1 Prupe.1G443100_v2.0.a1 Prupe.1G443100_v2.0.a1
pyrus_communis	pycom08g09040 pycom15g08340
rosa_chinensis	RchiOBHm_Chr6g0306871
rosa_laevigata	RLG00000010759
rosa_multiflora	Rmu_sc0009381.1_g000006
rosa_roxburghii	Rroxscaffold_7G00161400
rosa_rugosa	Rorug06G0354000
rosa_samantha	Rh6AG465500 Rh6BG435300 Rh6CG479900 Rh6DG466900
rosa_wichuraiana	Rw6G040570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	251, 641
AasI	GACNNNNNNGTC	1 cut(s)	905
Acc16I	TGCGCA	1 cut(s)	1167
Acc36I	ACCTGC	1 cut(s)	147
Acc65I	GGTACC	1 cut(s)	665
AccB1I	GGYRCC	1 cut(s)	665
AccB7I	CCANNNNNTGG	1 cut(s)	1231
AciI	CCGC	2 cut(s)	480, 656
AclI	AACGTT	1 cut(s)	128
AclWI	GGATC	3 cut(s)	575, 588, 1216
AcsI	RAATTY	2 cut(s)	190, 634
AcuI	CTGAAG	1 cut(s)	847
AcyI	GRCGYC	1 cut(s)	868
AfaI	GTAC	6 cut(s)	497, 667, 733, 919, 1024, 1174
AfiI	CCNNNNNNNGG	4 cut(s)	507, 532, 662, 1231
AgsI	TTSAA	3 cut(s)	166, 707, 1141
AjnI	CCWGG	2 cut(s)	668, 711
AleI	CACNNNNGTG	2 cut(s)	345, 441
AluBI	AGCT	7 cut(s)	162, 728, 946, 955, 1101, 1116, 1137
AluI	AGCT	7 cut(s)	162, 728, 946, 955, 1101, 1116, 1137
Alw21I	GWGCWC	3 cut(s)	119, 280, 597
Alw26I	GTCTC	1 cut(s)	516
AlwI	GGATC	3 cut(s)	575, 588, 1216
AoxI	GGCC	1 cut(s)	481
ApeKI	GCWGC	3 cut(s)	296, 725, 946
ApoI	RAATTY	2 cut(s)	190, 634
Asp700I	GAANNNNTTC	1 cut(s)	129
Asp718I	GGTACC	1 cut(s)	665
AspLEI	GCGC	1 cut(s)	1168
AsuHPI	GGTGA	2 cut(s)	268, 1195
AsuII	TTCGAA	1 cut(s)	1044
BaeI	ACNNNNGTAYC	2 cut(s)	649, 682
BamHI	GGATCC	1 cut(s)	580
BanI	GGYRCC	1 cut(s)	665
BauI	CACGAG	1 cut(s)	529
BbsI	GAAGAC	2 cut(s)	766, 1010
Bbv12I	GWGCWC	3 cut(s)	119, 280, 597
BbvI	GCAGC	3 cut(s)	308, 737, 933
BccI	CCATC	7 cut(s)	10, 249, 371, 563, 808, 906, 1202
BceAI	ACGGC	1 cut(s)	947
BciT130I	CCWGG	2 cut(s)	670, 713
BclI	TGATCA	1 cut(s)	1092
BcoDI	GTCTC	1 cut(s)	516
BfaI	CTAG	1 cut(s)	746
BfmI	CTRYAG	1 cut(s)	343
BfuAI	ACCTGC	1 cut(s)	147
BglII	AGATCT	2 cut(s)	453, 832
BisI	GCNGC	4 cut(s)	297, 481, 726, 947
BlsI	GCNGC	4 cut(s)	298, 482, 727, 948
BmcAI	AGTACT	1 cut(s)	1024
Bme1390I	CCNGG	2 cut(s)	670, 713
BmiI	GGNNCC	4 cut(s)	582, 627, 667, 687
BmrFI	CCNGG	2 cut(s)	670, 713
BmsI	GCATC	1 cut(s)	1052
BpiI	GAAGAC	2 cut(s)	766, 1010
BpmI	CTGGAG	2 cut(s)	611, 644
Bpu14I	TTCGAA	1 cut(s)	1044
BpuEI	CTTGAG	2 cut(s)	296, 1011
BsaBI	GATNNNNATC	1 cut(s)	20
BsaHI	GRCGYC	1 cut(s)	868
BsaI	GGTCTC	1 cut(s)	516
BsaJI	CCNNGG	4 cut(s)	9, 661, 669, 711
Bsc4I	CCNNNNNNNGG	4 cut(s)	507, 532, 662, 1231
Bse1I	ACTGG	3 cut(s)	627, 689, 1056
Bse3DI	GCAATG	2 cut(s)	584, 851
Bse8I	GATNNNNATC	1 cut(s)	20
BseBI	CCWGG	2 cut(s)	670, 713
BseDI	CCNNGG	4 cut(s)	9, 661, 669, 711
BseGI	GGATG	3 cut(s)	217, 917, 1067
BseJI	GATNNNNATC	1 cut(s)	20
BseLI	CCNNNNNNNGG	4 cut(s)	507, 532, 662, 1231
BseMI	GCAATG	2 cut(s)	584, 851
BseMII	CTCAG	2 cut(s)	293, 557
BseNI	ACTGG	3 cut(s)	627, 689, 1056
BseXI	GCAGC	3 cut(s)	308, 737, 933
BseYI	CCCAGC	1 cut(s)	1116
BshFI	GGCC	1 cut(s)	483
BshNI	GGYRCC	1 cut(s)	665
BsiHKAI	GWGCWC	3 cut(s)	119, 280, 597
BslI	CCNNNNNNNGG	4 cut(s)	507, 532, 662, 1231
BsmAI	GTCTC	1 cut(s)	516
BsmI	GAATGC	1 cut(s)	356
BsnI	GGCC	1 cut(s)	483
Bso31I	GGTCTC	1 cut(s)	516
Bsp119I	TTCGAA	1 cut(s)	1044
Bsp1286I	GDGCHC	3 cut(s)	119, 280, 597
Bsp143I	GATC	7 cut(s)	21, 54, 453, 580, 832, 1092, 1221
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	2 cut(s)	480, 656
BspANI	GGCC	1 cut(s)	483
BspCNI	CTCAG	2 cut(s)	292, 556
BspLI	GGNNCC	4 cut(s)	582, 627, 667, 687
BspMAI	CTGCAG	1 cut(s)	347
BspMI	ACCTGC	1 cut(s)	147
BspPI	GGATC	3 cut(s)	575, 588, 1216
BspT104I	TTCGAA	1 cut(s)	1044
BspT107I	GGYRCC	1 cut(s)	665
BspTNI	GGTCTC	1 cut(s)	516
BsrDI	GCAATG	2 cut(s)	584, 851
BsrI	ACTGG	3 cut(s)	627, 689, 1056
BssECI	CCNNGG	4 cut(s)	9, 661, 669, 711
BssMI	GATC	7 cut(s)	21, 54, 453, 580, 832, 1092, 1221
BssNI	GRCGYC	1 cut(s)	868
BssSI	CACGAG	1 cut(s)	529
BssT1I	CCWWGG	2 cut(s)	9, 661
Bst2BI	CACGAG	1 cut(s)	529
Bst2UI	CCWGG	2 cut(s)	670, 713
Bst4CI	ACNGT	4 cut(s)	29, 306, 1022, 1172
Bst6I	CTCTTC	2 cut(s)	405, 1077
BstACI	GRCGYC	1 cut(s)	868
BstAPI	GCANNNNNTGC	1 cut(s)	351
BstBI	TTCGAA	1 cut(s)	1044
BstC8I	GCNNGC	2 cut(s)	509, 1067
BstDEI	CTNAG	2 cut(s)	279, 543
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	3 cut(s)	217, 917, 1067
BstHHI	GCGC	1 cut(s)	1168
BstKTI	GATC	7 cut(s)	24, 57, 456, 583, 835, 1095, 1224
BstMAI	GTCTC	1 cut(s)	516
BstMBI	GATC	7 cut(s)	21, 54, 453, 580, 832, 1092, 1221
BstMWI	GCNNNNNNNGC	3 cut(s)	351, 497, 952
BstNI	CCWGG	2 cut(s)	670, 713
BstSCI	CCNGG	2 cut(s)	668, 711
BstSFI	CTRYAG	1 cut(s)	343
BstV1I	GCAGC	3 cut(s)	308, 737, 933
BstV2I	GAAGAC	2 cut(s)	766, 1010
BstX2I	RGATCY	3 cut(s)	453, 580, 832
BstXI	CCANNNNNNTGG	1 cut(s)	16
BstYI	RGATCY	3 cut(s)	453, 580, 832
BsuRI	GGCC	1 cut(s)	483
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	3 cut(s)	217, 917, 1067
BtsI	GCAGTG	3 cut(s)	280, 340, 352
BtsIMutI	CAGTG	5 cut(s)	280, 340, 352, 696, 1063
BveI	ACCTGC	1 cut(s)	147
Cac8I	GCNNGC	2 cut(s)	509, 1067
CfoI	GCGC	1 cut(s)	1168
CseI	GACGC	1 cut(s)	857
Csp6I	GTAC	6 cut(s)	496, 666, 732, 918, 1023, 1173
CviAII	CATG	4 cut(s)	10, 738, 896, 1231
CviQI	GTAC	6 cut(s)	496, 666, 732, 918, 1023, 1173
DdeI	CTNAG	2 cut(s)	279, 543
DpnI	GATC	7 cut(s)	23, 56, 455, 582, 834, 1094, 1223
DpnII	GATC	7 cut(s)	21, 54, 453, 580, 832, 1092, 1221
DrdI	GACNNNNNNGTC	1 cut(s)	905
DseDI	GACNNNNNNGTC	1 cut(s)	905
Eam1104I	CTCTTC	2 cut(s)	405, 1077
EarI	CTCTTC	2 cut(s)	405, 1077
Eco130I	CCWWGG	2 cut(s)	9, 661
Eco31I	GGTCTC	1 cut(s)	516
Eco57I	CTGAAG	1 cut(s)	847
EcoRII	CCWGG	2 cut(s)	668, 711
EcoT14I	CCWWGG	2 cut(s)	9, 661
ErhI	CCWWGG	2 cut(s)	9, 661
FaeI	CATG	4 cut(s)	13, 741, 899, 1234
FatI	CATG	4 cut(s)	9, 737, 895, 1230
FbaI	TGATCA	1 cut(s)	1092
Fnu4HI	GCNGC	4 cut(s)	297, 481, 726, 947
FokI	GGATG	3 cut(s)	224, 924, 1074
Fsp4HI	GCNGC	4 cut(s)	297, 481, 726, 947
FspBI	CTAG	1 cut(s)	746
FspI	TGCGCA	1 cut(s)	1167
GlaI	GCGC	1 cut(s)	1167
GluI	GCNGC	4 cut(s)	297, 481, 726, 947
GsaI	CCCAGC	1 cut(s)	1120
GsuI	CTGGAG	2 cut(s)	611, 644
HaeIII	GGCC	1 cut(s)	483
HgaI	GACGC	1 cut(s)	857
HhaI	GCGC	1 cut(s)	1168
Hin1I	GRCGYC	1 cut(s)	868
Hin1II	CATG	4 cut(s)	13, 741, 899, 1234
Hin6I	GCGC	1 cut(s)	1166
HinP1I	GCGC	1 cut(s)	1166
HincII	GTYRAC	1 cut(s)	1237
HindII	GTYRAC	1 cut(s)	1237
HindIII	AAGCTT	2 cut(s)	953, 1099
HinfI	GANTC	1 cut(s)	232
HphI	GGTGA	2 cut(s)	268, 1195
Hpy166II	GTNNAC	2 cut(s)	340, 1237
Hpy188I	TCNGA	7 cut(s)	172, 282, 450, 813, 911, 1097, 1207
Hpy188III	TCNNGA	6 cut(s)	33, 82, 313, 529, 545, 1028
Hpy8I	GTNNAC	2 cut(s)	340, 1237
Hpy99I	CGWCG	2 cut(s)	29, 873
HpyAV	CCTTC	5 cut(s)	178, 209, 812, 871, 934
HpyCH4III	ACNGT	4 cut(s)	29, 306, 1022, 1172
HpyCH4IV	ACGT	1 cut(s)	128
HpyCH4V	TGCA	8 cut(s)	296, 345, 354, 650, 851, 856, 884, 1065
HpyF10VI	GCNNNNNNNGC	3 cut(s)	351, 497, 952
HpyF3I	CTNAG	2 cut(s)	279, 543
HpySE526I	ACGT	1 cut(s)	128
Hsp92I	GRCGYC	1 cut(s)	868
Hsp92II	CATG	4 cut(s)	13, 741, 899, 1234
HspAI	GCGC	1 cut(s)	1166
KpnI	GGTACC	1 cut(s)	669
Ksp22I	TGATCA	1 cut(s)	1092
Kzo9I	GATC	7 cut(s)	21, 54, 453, 580, 832, 1092, 1221
LmnI	GCTCC	3 cut(s)	592, 625, 943
Lsp1109I	GCAGC	3 cut(s)	308, 737, 933
LweI	GCATC	1 cut(s)	1052
MaeI	CTAG	1 cut(s)	746
MaeII	ACGT	1 cut(s)	128
MalI	GATC	7 cut(s)	23, 56, 455, 582, 834, 1094, 1223
MboI	GATC	7 cut(s)	21, 54, 453, 580, 832, 1092, 1221
MfeI	CAATTG	1 cut(s)	355
MflI	RGATCY	3 cut(s)	453, 580, 832
MhlI	GDGCHC	3 cut(s)	119, 280, 597
MluCI	AATT	7 cut(s)	36, 190, 283, 355, 612, 634, 838
MlyI	GAGTC	1 cut(s)	226
MmeI	TCCRAC	2 cut(s)	889, 1249
MroXI	GAANNNNTTC	1 cut(s)	129
MseI	TTAA	3 cut(s)	773, 837, 957
MslI	CAYNNNNRTG	5 cut(s)	14, 345, 441, 1181, 1206
MspR9I	CCNGG	2 cut(s)	670, 713
MunI	CAATTG	1 cut(s)	355
Mva1269I	GAATGC	1 cut(s)	356
MvaI	CCWGG	2 cut(s)	670, 713
MwoI	GCNNNNNNNGC	3 cut(s)	351, 497, 952
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	7 cut(s)	21, 54, 453, 580, 832, 1092, 1221
NlaIII	CATG	4 cut(s)	13, 741, 899, 1234
NlaIV	GGNNCC	4 cut(s)	582, 627, 667, 687
NsbI	TGCGCA	1 cut(s)	1167
NspV	TTCGAA	1 cut(s)	1044
OliI	CACNNNNGTG	2 cut(s)	345, 441
PctI	GAATGC	1 cut(s)	356
PdmI	GAANNNNTTC	1 cut(s)	129
PflMI	CCANNNNNTGG	1 cut(s)	1231
PkrI	GCNGC	4 cut(s)	298, 482, 727, 948
PleI	GAGTC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	226
PsiI	TTATAA	2 cut(s)	251, 641
Psp1406I	AACGTT	1 cut(s)	128
Psp6I	CCWGG	2 cut(s)	668, 711
PspFI	CCCAGC	1 cut(s)	1116
PspGI	CCWGG	2 cut(s)	668, 711
PspN4I	GGNNCC	4 cut(s)	582, 627, 667, 687
PstI	CTGCAG	1 cut(s)	347
PsuI	RGATCY	3 cut(s)	453, 580, 832
RsaI	GTAC	6 cut(s)	497, 667, 733, 919, 1024, 1174
RsaNI	GTAC	6 cut(s)	496, 666, 732, 918, 1023, 1173
RseI	CAYNNNNRTG	5 cut(s)	14, 345, 441, 1181, 1206
SaqAI	TTAA	3 cut(s)	773, 837, 957
SatI	GCNGC	4 cut(s)	297, 481, 726, 947
Sau3AI	GATC	7 cut(s)	21, 54, 453, 580, 832, 1092, 1221
ScaI	AGTACT	1 cut(s)	1024
SchI	GAGTC	1 cut(s)	226
ScrFI	CCNGG	2 cut(s)	670, 713
SduI	GDGCHC	3 cut(s)	119, 280, 597
SfaNI	GCATC	1 cut(s)	1052
SfcI	CTRYAG	1 cut(s)	343
SfuI	TTCGAA	1 cut(s)	1044
SmiMI	CAYNNNNRTG	5 cut(s)	14, 345, 441, 1181, 1206
SmlI	CTYRAG	2 cut(s)	311, 1026
SmoI	CTYRAG	2 cut(s)	311, 1026
Sse9I	AATT	7 cut(s)	36, 190, 283, 355, 612, 634, 838
SsiI	CCGC	2 cut(s)	480, 656
SspMI	CTAG	1 cut(s)	746
StyD4I	CCNGG	2 cut(s)	668, 711
StyI	CCWWGG	2 cut(s)	9, 661
TaaI	ACNGT	4 cut(s)	29, 306, 1022, 1172
TaiI	ACGT	1 cut(s)	131
TaqI	TCGA	2 cut(s)	24, 1044
TasI	AATT	7 cut(s)	36, 190, 283, 355, 612, 634, 838
TatI	WGTACW	2 cut(s)	917, 1022
TauI	GCSGC	1 cut(s)	483
Tru1I	TTAA	3 cut(s)	773, 837, 957
Tru9I	TTAA	3 cut(s)	773, 837, 957
TscAI	CASTG	5 cut(s)	280, 347, 352, 696, 1063
TseI	GCWGC	3 cut(s)	296, 725, 946
TspDTI	ATGAA	4 cut(s)	122, 228, 462, 531
TspGWI	ACGGA	2 cut(s)	191, 412
TspRI	CASTG	5 cut(s)	280, 347, 352, 696, 1063
Van91I	CCANNNNNTGG	1 cut(s)	1231
XapI	RAATTY	2 cut(s)	190, 634
XmnI	GAANNNNTTC	1 cut(s)	129
XspI	CTAG	1 cut(s)	746
ZrmI	AGTACT	1 cut(s)	1024

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.