Rh6DG466900

Putative serine esterase (DUF676)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0008052
Physical Location & Seq
Forward (+)
63405396 .. 63408574
3179 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG466900.1

Sequence Viewer

Length: 1017 bp
ATGGCTTCTCTGGAGTCGGAGGCCGGCTCTGTACGGACCGCCGAATCTTCCAATGAAATCAAACAGAGAGCCAGAAAAAATAGGACCAACAAGAAGAAGACCAAAAACGGTGCGTTTCGTTACCTCCCCAAATTTCGGTGCTTTAGTTTAAAATCGGAAACGACTGACGGTCACGGGAAGGGGAGTTTCGATATGGAGGTGGAGGATGAAGCGGACCCGACCCACCTTGTCATAATGGTTAATGGGCTTATAGGCAGTGCCGAGGATTGGAGGTATGCAGCGACCCAGTTTGTGAAGAGATACCCAGAAGATGTTGTTGTGCATTGCAGTGAATGTAATTGTTCAACGTTGACATTTGATGGTGTGGATGTAATGGGGGAGAGATTAGCAGAAGAGGTTAAATGTGTAATAAAACGCCACCAAAGTGTTCAGAAGATCTCGTTTGTTGGTCACTCATTAGGTGGCCTTATAGCAAGGTATGCCATTGGCAGGCTTTATGAACGCGACACAACAAGGGAACTTTCTCAGGAAAATGGAGAATGTAGGGGCAATGGATTTGAGGATCCATCGCTGGAACAGAAAGCGAAAAGCAAAATTGCTGGGCTGGAGCCCGTGAATTTTATAACGTCTGCAACTCCGCACCTCGGTTCATGGGGGCATAAACAGGTTCCAGTGTTTTGTGGCTTTCAAATCCTTGAAAAAGCAGCAGCTCGTACTTCATGGTGTTTAGGTAGAACTGGAAGACATCTGTTTTTAACTGATAGGGATAAAGGAAAACCTCCCCTTTTACTTCAGATGGTTTATGATTCTGAAGATCTTAAATTCTTATCTGCATTGAAGTCCTTCAAGCGTCATGTTGCCTATGCAAATGTTCATTATGATCGTATCCTCTTAATTTATTTAGCTCTATGTTTTTTCTTAATGTTTTCTTTTGTAATTAATATGCTTTTCTTGTTGAAGGAGATGTTTTGCAATCCGGCACTTTGCCATCCAGATCTGGTCTTGAAATGTAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF676

Protein Analysis

338

Amino Acids

38.22

Weight (kDa)

8.74

Isoelectric Point (pI)

33.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF676 PF05057 72 - 300 6.5e-66 Putative serine esterase (DUF676)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 623
AccII CGCG 1 cut(s) 504
AciI CCGC 3 cut(s) 39, 212, 638
AclI AACGTT 1 cut(s) 347
AclWI GGATC 2 cut(s) 557, 570
AcsI RAATTY 3 cut(s) 131, 616, 821
AcuI CTGAAG 2 cut(s) 776, 831
AfaI GTAC 2 cut(s) 33, 715
AfiI CCNNNNNNNGG 4 cut(s) 135, 267, 489, 644
AgsI TTSAA 7 cut(s) 345, 689, 698, 838, 847, 958, 1006
AhdI GACNNNNNGTC 1 cut(s) 168
AleI CACNNNNGTG 1 cut(s) 423
AluBI AGCT 2 cut(s) 710, 905
AluI AGCT 2 cut(s) 710, 905
AlwI GGATC 2 cut(s) 557, 570
AoxI GGCC 2 cut(s) 21, 463
ApeKI GCWGC 3 cut(s) 278, 704, 707
ApoI RAATTY 3 cut(s) 131, 616, 821
AseI ATTAAT 1 cut(s) 939
Asp700I GAANNNNTTC 1 cut(s) 842
AspS9I GGNCC 3 cut(s) 36, 84, 214
AvaII GGWCC 3 cut(s) 36, 84, 214
BamHI GGATCC 1 cut(s) 562
BanII GRGCYC 1 cut(s) 612
BbsI GAAGAC 2 cut(s) 104, 748
BbvI GCAGC 3 cut(s) 290, 716, 719
BccI CCATC 4 cut(s) 353, 574, 790, 996
BciVI GTATCC 1 cut(s) 896
BfuI GTATCC 1 cut(s) 896
BglII AGATCT 3 cut(s) 435, 814, 994
BisI GCNGC 3 cut(s) 279, 705, 708
BlsI GCNGC 3 cut(s) 280, 706, 709
Bme18I GGWCC 3 cut(s) 36, 84, 214
BmeRI GACNNNNNGTC 1 cut(s) 168
BmgT120I GGNCC 3 cut(s) 36, 84, 214
BmiI GGNNCC 4 cut(s) 216, 564, 609, 669
BmrI ACTGGG 1 cut(s) 280
BmuI ACTGGG 1 cut(s) 280
BpiI GAAGAC 2 cut(s) 104, 748
BplI GAGNNNNNCTC 2 cut(s) 11, 43
BpmI CTGGAG 2 cut(s) 32, 626
BsaJI CCNNGG 2 cut(s) 261, 643
Bsc4I CCNNNNNNNGG 4 cut(s) 135, 267, 489, 644
Bse118I RCCGGY 1 cut(s) 23
Bse1I ACTGG 3 cut(s) 286, 671, 742
Bse3DI GCAATG 2 cut(s) 322, 556
BseDI CCNNGG 2 cut(s) 261, 643
BseGI GGATG 3 cut(s) 211, 373, 988
BseLI CCNNNNNNNGG 4 cut(s) 135, 267, 489, 644
BseMI GCAATG 2 cut(s) 322, 556
BseMII CTCAG 1 cut(s) 539
BseNI ACTGG 3 cut(s) 286, 671, 742
BseXI GCAGC 3 cut(s) 290, 716, 719
BseYI CCCAGC 1 cut(s) 599
Bsh1236I CGCG 1 cut(s) 504
BshFI GGCC 2 cut(s) 23, 465
BsiSI CCGG 2 cut(s) 24, 977
BslI CCNNNNNNNGG 4 cut(s) 135, 267, 489, 644
BsnI GGCC 2 cut(s) 23, 465
Bsp1286I GDGCHC 1 cut(s) 612
Bsp143I GATC 5 cut(s) 435, 562, 814, 880, 994
BspACI CCGC 3 cut(s) 39, 212, 638
BspANI GGCC 2 cut(s) 23, 465
BspCNI CTCAG 1 cut(s) 538
BspFNI CGCG 1 cut(s) 504
BspLI GGNNCC 4 cut(s) 216, 564, 609, 669
BspPI GGATC 2 cut(s) 557, 570
BsrDI GCAATG 2 cut(s) 322, 556
BsrFI RCCGGY 1 cut(s) 23
BsrI ACTGG 3 cut(s) 286, 671, 742
BssAI RCCGGY 1 cut(s) 23
BssECI CCNNGG 2 cut(s) 261, 643
BssMI GATC 5 cut(s) 435, 562, 814, 880, 994
Bst4CI ACNGT 2 cut(s) 110, 170
Bst6I CTCTTC 2 cut(s) 290, 387
BstAPI GCANNNNNTGC 1 cut(s) 479
BstC8I GCNNGC 2 cut(s) 25, 491
BstDEI CTNAG 1 cut(s) 525
BstF5I GGATG 3 cut(s) 211, 373, 988
BstFNI CGCG 1 cut(s) 504
BstKTI GATC 5 cut(s) 438, 565, 817, 883, 997
BstMBI GATC 5 cut(s) 435, 562, 814, 880, 994
BstMWI GCNNNNNNNGC 1 cut(s) 479
BstUI CGCG 1 cut(s) 504
BstV1I GCAGC 3 cut(s) 290, 716, 719
BstV2I GAAGAC 2 cut(s) 104, 748
BstX2I RGATCY 4 cut(s) 435, 562, 814, 994
BstYI RGATCY 4 cut(s) 435, 562, 814, 994
BsuI GTATCC 1 cut(s) 896
BsuRI GGCC 2 cut(s) 23, 465
BtgZI GCGATG 1 cut(s) 552
BtsCI GGATG 3 cut(s) 211, 373, 988
BtsI GCAGTG 2 cut(s) 262, 334
BtsIMutI CAGTG 3 cut(s) 262, 334, 678
Cac8I GCNNGC 2 cut(s) 25, 491
Cfr10I RCCGGY 1 cut(s) 23
Cfr13I GGNCC 3 cut(s) 36, 84, 214
CpoI CGGWCCG 1 cut(s) 36
CseI GACGC 1 cut(s) 839
Csp6I GTAC 2 cut(s) 32, 714
CspI CGGWCCG 1 cut(s) 36
CviAII CATG 3 cut(s) 651, 720, 854
CviQI GTAC 2 cut(s) 32, 714
DdeI CTNAG 1 cut(s) 525
DpnI GATC 5 cut(s) 437, 564, 816, 882, 996
DpnII GATC 5 cut(s) 435, 562, 814, 880, 994
DraI TTTAAA 1 cut(s) 150
DriI GACNNNNNGTC 1 cut(s) 168
Eam1104I CTCTTC 2 cut(s) 290, 387
Eam1105I GACNNNNNGTC 1 cut(s) 168
EarI CTCTTC 2 cut(s) 290, 387
Eco24I GRGCYC 1 cut(s) 612
Eco47I GGWCC 3 cut(s) 36, 84, 214
Eco57I CTGAAG 2 cut(s) 776, 831
EcoT38I GRGCYC 1 cut(s) 612
FaeI CATG 3 cut(s) 654, 723, 857
FatI CATG 3 cut(s) 650, 719, 853
Fnu4HI GCNGC 3 cut(s) 279, 705, 708
FokI GGATG 3 cut(s) 218, 380, 975
FriOI GRGCYC 1 cut(s) 612
Fsp4HI GCNGC 3 cut(s) 279, 705, 708
GluI GCNGC 3 cut(s) 279, 705, 708
GsaI CCCAGC 1 cut(s) 603
GsuI CTGGAG 2 cut(s) 32, 626
HaeIII GGCC 2 cut(s) 23, 465
HapII CCGG 2 cut(s) 24, 977
HgaI GACGC 1 cut(s) 839
Hin1II CATG 3 cut(s) 654, 723, 857
HincII GTYRAC 1 cut(s) 351
HindII GTYRAC 1 cut(s) 351
HinfI GANTC 3 cut(s) 14, 44, 806
HpaII CCGG 2 cut(s) 24, 977
Hpy166II GTNNAC 1 cut(s) 351
Hpy188I TCNGA 5 cut(s) 19, 157, 432, 795, 811
Hpy188III TCNNGA 4 cut(s) 11, 527, 992, 1003
Hpy8I GTNNAC 1 cut(s) 351
HpyAV CCTTC 3 cut(s) 172, 853, 952
HpyCH4III ACNGT 2 cut(s) 110, 170
HpyCH4IV ACGT 2 cut(s) 347, 626
HpyCH4V TGCA 7 cut(s) 278, 322, 327, 632, 833, 866, 972
HpyF10VI GCNNNNNNNGC 1 cut(s) 479
HpyF3I CTNAG 1 cut(s) 525
HpySE526I ACGT 2 cut(s) 347, 626
Hsp92II CATG 3 cut(s) 654, 723, 857
KroI GCCGGC 1 cut(s) 23
KroNI GCCGGC 1 cut(s) 25
Kzo9I GATC 5 cut(s) 435, 562, 814, 880, 994
LmnI GCTCC 1 cut(s) 607
Lsp1109I GCAGC 3 cut(s) 290, 716, 719
MaeII ACGT 2 cut(s) 347, 626
MaeIII GTNAC 3 cut(s) 119, 170, 449
MalI GATC 5 cut(s) 437, 564, 816, 882, 996
MboI GATC 5 cut(s) 435, 562, 814, 880, 994
MboII GAAGA 9 cut(s) 39, 106, 109, 307, 320, 404, 445, 753, 824
MflI RGATCY 4 cut(s) 435, 562, 814, 994
MhlI GDGCHC 1 cut(s) 612
MluCI AATT 7 cut(s) 131, 337, 594, 616, 821, 894, 936
MlyI GAGTC 1 cut(s) 23
MroNI GCCGGC 1 cut(s) 23
MroXI GAANNNNTTC 1 cut(s) 842
MseI TTAA 8 cut(s) 149, 240, 399, 755, 819, 893, 920, 939
MslI CAYNNNNRTG 2 cut(s) 327, 423
MspI CCGG 2 cut(s) 24, 977
MvnI CGCG 1 cut(s) 504
MwoI GCNNNNNNNGC 1 cut(s) 479
NaeI GCCGGC 1 cut(s) 25
NdeII GATC 5 cut(s) 435, 562, 814, 880, 994
NgoMIV GCCGGC 1 cut(s) 23
NlaIII CATG 3 cut(s) 654, 723, 857
NlaIV GGNNCC 4 cut(s) 216, 564, 609, 669
NmeAIII GCCGAG 1 cut(s) 286
NmuCI GTSAC 2 cut(s) 170, 449
OliI CACNNNNGTG 1 cut(s) 423
PdiI GCCGGC 1 cut(s) 25
PdmI GAANNNNTTC 1 cut(s) 842
PfeI GAWTC 2 cut(s) 44, 806
PkrI GCNGC 3 cut(s) 280, 706, 709
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
PshBI ATTAAT 1 cut(s) 939
PsiI TTATAA 1 cut(s) 623
Psp1406I AACGTT 1 cut(s) 347
PspFI CCCAGC 1 cut(s) 599
PspN4I GGNNCC 4 cut(s) 216, 564, 609, 669
PspPI GGNCC 3 cut(s) 36, 84, 214
PsuI RGATCY 4 cut(s) 435, 562, 814, 994
RsaI GTAC 2 cut(s) 33, 715
RsaNI GTAC 2 cut(s) 32, 714
RseI CAYNNNNRTG 2 cut(s) 327, 423
Rsr2I CGGWCCG 1 cut(s) 36
RsrII CGGWCCG 1 cut(s) 36
SaqAI TTAA 8 cut(s) 149, 240, 399, 755, 819, 893, 920, 939
SatI GCNGC 3 cut(s) 279, 705, 708
Sau3AI GATC 5 cut(s) 435, 562, 814, 880, 994
Sau96I GGNCC 3 cut(s) 36, 84, 214
SchI GAGTC 1 cut(s) 23
SduI GDGCHC 1 cut(s) 612
SinI GGWCC 3 cut(s) 36, 84, 214
SmiMI CAYNNNNRTG 2 cut(s) 327, 423
Sse9I AATT 7 cut(s) 131, 337, 594, 616, 821, 894, 936
SsiI CCGC 3 cut(s) 39, 212, 638
TaaI ACNGT 2 cut(s) 110, 170
TaiI ACGT 2 cut(s) 350, 629
TaqI TCGA 1 cut(s) 189
TasI AATT 7 cut(s) 131, 337, 594, 616, 821, 894, 936
TfiI GAWTC 2 cut(s) 44, 806
Tru1I TTAA 8 cut(s) 149, 240, 399, 755, 819, 893, 920, 939
Tru9I TTAA 8 cut(s) 149, 240, 399, 755, 819, 893, 920, 939
TscAI CASTG 3 cut(s) 262, 334, 678
TseFI GTSAC 2 cut(s) 170, 449
TseI GCWGC 3 cut(s) 278, 704, 707
Tsp45I GTSAC 2 cut(s) 170, 449
TspDTI ATGAA 6 cut(s) 69, 222, 513, 639, 708, 863
TspGWI ACGGA 1 cut(s) 49
TspRI CASTG 3 cut(s) 262, 334, 678
VpaK11BI GGWCC 3 cut(s) 36, 84, 214
VspI ATTAAT 1 cut(s) 939
XapI RAATTY 3 cut(s) 131, 616, 821
XmnI GAANNNNTTC 1 cut(s) 842
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.