Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001987

Physical Location & Seq

Genomic Coordinates Forward (+)

4198337 .. 4200849

Gene Structure 2513 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G12350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGAGTTCGATCTCTGGATTGGTGGAAGATGAAATCAGTTCGTTTTTCGAATCGTCTCCACCTCTGAAGAACAAGGAAGAGATCGTAGCCAATCTTAATCAGTTCATTGAGCTGAATTCTTCGTGTCAAGGAGGGATGAGGAGGATTGTATGTGTGACTTCAGGTGGAACTACAGTTCCATTGGAGCAACGATGTGTAAGATACATTGATAATTTCAGCTCTGGAAATAGAGGTGCTGCTTCTACTGAGAATTTCGTCAAGGCTGGATATGCTGTGATATTTCTCTATAGGAGGGGAACTTGTCAACCGTATTGCCGGTATCTTCCTGATGATCCATTCCTTGAATGTTTTGAGTTTCCAGATGCCAAAAACATTCAAGTTCATGGGTCACATTCAGGAGCTGTGAAGATGGCTGTTATGGACCAGCAAGCTGCAGTTGCAGAAGGTCGCTTGCTTAAACTCCCATTCTCAACCATATATGAATATCTCCAGATGTTGCGGTTGATTGCTACGATATTGAAAGATGTCGGTCCATGTTCGATGTTTTATCTTGCTGCTGCTGTATCTGACTTCTATGTGCCATGGTTAAGCATGACAGAGCACAAAATAGAATCAGGATCTGGTCCTTTGGACATAAGACTAGCTCAAGTCCCTAAAATGCTTTCAATCTTGAGATCAAATTGGGCTCCAAAGGCTTTCTGCATATCATTCAAGCTTGAGACAGACTCAAAGATTTTGCTAGAGAAAGCTACAAAGGCTTTACAAAAATACAAAGTGCACGCAGTTGTAGCAAATGAACTATTAACGCGTAAGGAGGAAGTTGTGGTTGTTTCAAGTAGCGGTAATGTTGTGGTGAGACGTGATAGCAATAAGCCGGAATCTATCGTAGAAGATAATCTCATTCGTCTCCTCGTAGATCGACATTCAACATACATCAAAGAATCTCTCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004632 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009987 GO:0015936 GO:0015937 GO:0016874 GO:0016879 GO:0016881 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

DFP

Protein Analysis

317

Amino Acids

35.37

Weight (kDa)

7.54

Isoelectric Point (pI)

47.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DFP	PF04127	169 - 286	3.6e-10	DNA/pantothenate metabolism flavoprotein C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12350 AT1G12350 AT5G02080 AT5G02080 AT5G02080 AT5G02080 AT5G02080 AT5G02080 AT5G02080
fragaria_vesca	FvH4_5g38402 FvH4_5g38402 FvH4_5g38420 FvH4_5g38420 FvH4_7g08221 FvH4_7g08221
malus_domestica	MD08G1174000.v1.1 MD15G1360400.v1.1
prunus_persica	Prupe.1G507900_v2.0.a1 Prupe.1G507900_v2.0.a1 Prupe.1G507900_v2.0.a1 Prupe.1G507900_v2.0.a1
pyrus_communis	pycom08g14920 pycom15g32230
rosa_chinensis	RchiOBHm_Chr1g0340891 RchiOBHm_Chr1g0340911 RchiOBHm_Chr7g0240421
rosa_laevigata	RLG00000000678 RLG00000029049
rosa_multiflora	Rmu_sc0001211.1_g000112 Rmu_sc0002676.1_g000001
rosa_roxburghii	Rroxscaffold_3G00220100
rosa_rugosa	Rorug01G0160900.1 Rorug07G0335900
rosa_samantha	Rh1AG175900 Rh1BG143900 Rh1CG163800 Rh1DG175600 Rh7AG490200 Rh7BG463100 Rh7CG506600 Rh7DG474200
rosa_wichuraiana	Rw0G004950 Rw1G014660 Rw7G041000 Rw7G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	808
AciI	CCGC	2 cut(s)	499, 840
AclWI	GGATC	2 cut(s)	326, 625
AcsI	RAATTY	2 cut(s)	115, 250
AcuI	CTGAAG	2 cut(s)	86, 144
AflIII	ACRYGT	1 cut(s)	806
AgsI	TTSAA	7 cut(s)	344, 377, 520, 666, 712, 834, 927
AjiI	CACGTC	1 cut(s)	860
AloI	GAACNNNNNNTCC	4 cut(s)	159, 160, 191, 192
AluBI	AGCT	7 cut(s)	112, 219, 401, 431, 644, 715, 749
AluI	AGCT	7 cut(s)	112, 219, 401, 431, 644, 715, 749
Alw21I	GWGCWC	2 cut(s)	603, 780
Alw26I	GTCTC	4 cut(s)	60, 713, 850, 911
Alw44I	GTGCAC	1 cut(s)	776
AlwI	GGATC	2 cut(s)	326, 625
AlwNI	CAGNNNCTG	2 cut(s)	401, 620
ApaLI	GTGCAC	1 cut(s)	776
ApeKI	GCWGC	4 cut(s)	236, 431, 554, 557
ApoI	RAATTY	2 cut(s)	115, 250
AspS9I	GGNCC	3 cut(s)	421, 530, 623
AsuHPI	GGTGA	1 cut(s)	865
AsuII	TTCGAA	1 cut(s)	48
AvaII	GGWCC	3 cut(s)	421, 530, 623
BaeGI	GKGCMC	1 cut(s)	780
BanII	GRGCYC	1 cut(s)	688
Bbv12I	GWGCWC	2 cut(s)	603, 780
BbvI	GCAGC	4 cut(s)	223, 418, 541, 544
BccI	CCATC	1 cut(s)	403
BcoDI	GTCTC	4 cut(s)	60, 713, 850, 911
BfaI	CTAG	2 cut(s)	641, 740
BfmI	CTRYAG	3 cut(s)	171, 286, 432
BisI	GCNGC	4 cut(s)	237, 432, 555, 558
BlsI	GCNGC	4 cut(s)	238, 433, 556, 559
Bme18I	GGWCC	3 cut(s)	421, 530, 623
BmgBI	CACGTC	1 cut(s)	860
BmgT120I	GGNCC	3 cut(s)	421, 530, 623
BmiI	GGNNCC	1 cut(s)	687
BmsI	GCATC	1 cut(s)	352
BplI	GAGNNNNNCTC	2 cut(s)	710, 742
BpmI	CTGGAG	1 cut(s)	473
Bpu14I	TTCGAA	1 cut(s)	48
BpuEI	CTTGAG	3 cut(s)	630, 691, 737
BsaJI	CCNNGG	1 cut(s)	581
Bse118I	RCCGGY	1 cut(s)	315
BseDI	CCNNGG	1 cut(s)	581
BseGI	GGATG	1 cut(s)	141
BseMII	CTCAG	1 cut(s)	237
BseRI	GAGGAG	2 cut(s)	154, 899
BseSI	GKGCMC	1 cut(s)	780
BseXI	GCAGC	4 cut(s)	223, 418, 541, 544
Bsh1236I	CGCG	1 cut(s)	808
BsiHKAI	GWGCWC	2 cut(s)	603, 780
BsiSI	CCGG	2 cut(s)	316, 875
BslFI	GGGAC	1 cut(s)	635
BsmAI	GTCTC	4 cut(s)	60, 713, 850, 911
BsmBI	CGTCTC	3 cut(s)	60, 850, 911
BsmFI	GGGAC	1 cut(s)	635
Bsp119I	TTCGAA	1 cut(s)	48
Bsp1286I	GDGCHC	3 cut(s)	603, 688, 780
Bsp143I	GATC	6 cut(s)	9, 81, 331, 617, 674, 916
Bsp19I	CCATGG	1 cut(s)	581
BspACI	CCGC	2 cut(s)	499, 840
BspCNI	CTCAG	1 cut(s)	238
BspFNI	CGCG	1 cut(s)	808
BspLI	GGNNCC	1 cut(s)	687
BspMAI	CTGCAG	1 cut(s)	436
BspPI	GGATC	2 cut(s)	326, 625
BspT104I	TTCGAA	1 cut(s)	48
BsrFI	RCCGGY	1 cut(s)	315
BssAI	RCCGGY	1 cut(s)	315
BssECI	CCNNGG	1 cut(s)	581
BssMI	GATC	6 cut(s)	9, 81, 331, 617, 674, 916
BssT1I	CCWWGG	1 cut(s)	581
Bst4CI	ACNGT	2 cut(s)	175, 309
Bst6I	CTCTTC	1 cut(s)	72
BstBI	TTCGAA	1 cut(s)	48
BstC8I	GCNNGC	3 cut(s)	429, 452, 780
BstDEI	CTNAG	1 cut(s)	246
BstDSI	CCRYGG	1 cut(s)	581
BstF5I	GGATG	1 cut(s)	141
BstFNI	CGCG	1 cut(s)	808
BstKTI	GATC	6 cut(s)	12, 84, 334, 620, 677, 919
BstMAI	GTCTC	4 cut(s)	60, 713, 850, 911
BstMBI	GATC	6 cut(s)	9, 81, 331, 617, 674, 916
BstMWI	GCNNNNNNNGC	5 cut(s)	269, 437, 692, 755, 788
BstSFI	CTRYAG	3 cut(s)	171, 286, 432
BstSLI	GKGCMC	1 cut(s)	780
BstUI	CGCG	1 cut(s)	808
BstV1I	GCAGC	4 cut(s)	223, 418, 541, 544
BstX2I	RGATCY	1 cut(s)	617
BstYI	RGATCY	1 cut(s)	617
BtgI	CCRYGG	1 cut(s)	581
BtrI	CACGTC	1 cut(s)	860
BtsCI	GGATG	1 cut(s)	141
Cac8I	GCNNGC	3 cut(s)	429, 452, 780
CaiI	CAGNNNCTG	2 cut(s)	401, 620
Cfr10I	RCCGGY	1 cut(s)	315
Cfr13I	GGNCC	3 cut(s)	421, 530, 623
CviAII	CATG	4 cut(s)	383, 534, 582, 592
DdeI	CTNAG	1 cut(s)	246
DpnI	GATC	6 cut(s)	11, 83, 333, 619, 676, 918
DpnII	GATC	6 cut(s)	9, 81, 331, 617, 674, 916
Eam1104I	CTCTTC	1 cut(s)	72
EarI	CTCTTC	1 cut(s)	72
Eco130I	CCWWGG	1 cut(s)	581
Eco24I	GRGCYC	1 cut(s)	688
Eco47I	GGWCC	3 cut(s)	421, 530, 623
Eco57I	CTGAAG	2 cut(s)	86, 144
EcoRI	GAATTC	1 cut(s)	115
EcoT14I	CCWWGG	1 cut(s)	581
EcoT38I	GRGCYC	1 cut(s)	688
ErhI	CCWWGG	1 cut(s)	581
Esp3I	CGTCTC	3 cut(s)	60, 850, 911
FaeI	CATG	4 cut(s)	386, 537, 585, 595
FaqI	GGGAC	1 cut(s)	635
FatI	CATG	4 cut(s)	382, 533, 581, 591
Fnu4HI	GCNGC	4 cut(s)	237, 432, 555, 558
FokI	GGATG	1 cut(s)	148
FriOI	GRGCYC	1 cut(s)	688
Fsp4HI	GCNGC	4 cut(s)	237, 432, 555, 558
FspBI	CTAG	2 cut(s)	641, 740
GluI	GCNGC	4 cut(s)	237, 432, 555, 558
GsuI	CTGGAG	1 cut(s)	473
HapII	CCGG	2 cut(s)	316, 875
Hin1II	CATG	4 cut(s)	386, 537, 585, 595
HincII	GTYRAC	1 cut(s)	305
HindII	GTYRAC	1 cut(s)	305
HindIII	AAGCTT	1 cut(s)	713
HinfI	GANTC	5 cut(s)	50, 611, 725, 878, 941
HpaII	CCGG	2 cut(s)	316, 875
HphI	GGTGA	1 cut(s)	865
Hpy166II	GTNNAC	2 cut(s)	305, 778
Hpy188I	TCNGA	2 cut(s)	66, 568
Hpy188III	TCNNGA	8 cut(s)	15, 222, 326, 359, 396, 490, 615, 670
Hpy8I	GTNNAC	2 cut(s)	305, 778
HpyAV	CCTTC	1 cut(s)	437
HpyCH4III	ACNGT	2 cut(s)	175, 309
HpyCH4IV	ACGT	1 cut(s)	859
HpyCH4V	TGCA	4 cut(s)	434, 440, 702, 778
HpyF10VI	GCNNNNNNNGC	5 cut(s)	269, 437, 692, 755, 788
HpyF3I	CTNAG	1 cut(s)	246
HpySE526I	ACGT	1 cut(s)	859
Hsp92II	CATG	4 cut(s)	386, 537, 585, 595
Kzo9I	GATC	6 cut(s)	9, 81, 331, 617, 674, 916
LmnI	GCTCC	3 cut(s)	184, 398, 691
Lsp1109I	GCAGC	4 cut(s)	223, 418, 541, 544
LweI	GCATC	1 cut(s)	352
MaeI	CTAG	2 cut(s)	641, 740
MaeII	ACGT	1 cut(s)	859
MaeIII	GTNAC	2 cut(s)	154, 387
MalI	GATC	6 cut(s)	11, 83, 333, 619, 676, 918
MboI	GATC	6 cut(s)	9, 81, 331, 617, 674, 916
MboII	GAAGA	7 cut(s)	38, 79, 89, 111, 314, 418, 902
MflI	RGATCY	1 cut(s)	617
MhlI	GDGCHC	3 cut(s)	603, 688, 780
MluCI	AATT	4 cut(s)	115, 211, 250, 679
MluI	ACGCGT	1 cut(s)	806
MlyI	GAGTC	1 cut(s)	719
MnlI	CCTC	8 cut(s)	72, 125, 132, 135, 224, 285, 808, 920
MseI	TTAA	4 cut(s)	96, 456, 587, 803
MspI	CCGG	2 cut(s)	316, 875
MvnI	CGCG	1 cut(s)	808
MwoI	GCNNNNNNNGC	5 cut(s)	269, 437, 692, 755, 788
NcoI	CCATGG	1 cut(s)	581
NdeII	GATC	6 cut(s)	9, 81, 331, 617, 674, 916
NlaIII	CATG	4 cut(s)	386, 537, 585, 595
NlaIV	GGNNCC	1 cut(s)	687
NmuCI	GTSAC	2 cut(s)	154, 387
NspV	TTCGAA	1 cut(s)	48
PfeI	GAWTC	4 cut(s)	50, 611, 878, 941
PkrI	GCNGC	4 cut(s)	238, 433, 556, 559
PleI	GAGTC	1 cut(s)	719
PpsI	GAGTC	1 cut(s)	719
PspN4I	GGNNCC	1 cut(s)	687
PspPI	GGNCC	3 cut(s)	421, 530, 623
PstI	CTGCAG	1 cut(s)	436
PstNI	CAGNNNCTG	2 cut(s)	401, 620
PsuI	RGATCY	1 cut(s)	617
SaqAI	TTAA	4 cut(s)	96, 456, 587, 803
SatI	GCNGC	4 cut(s)	237, 432, 555, 558
Sau3AI	GATC	6 cut(s)	9, 81, 331, 617, 674, 916
Sau96I	GGNCC	3 cut(s)	421, 530, 623
SchI	GAGTC	1 cut(s)	719
SduI	GDGCHC	3 cut(s)	603, 688, 780
SfaNI	GCATC	1 cut(s)	352
SfcI	CTRYAG	3 cut(s)	171, 286, 432
SfuI	TTCGAA	1 cut(s)	48
SinI	GGWCC	3 cut(s)	421, 530, 623
SmlI	CTYRAG	3 cut(s)	645, 670, 716
SmoI	CTYRAG	3 cut(s)	645, 670, 716
Sse9I	AATT	4 cut(s)	115, 211, 250, 679
SsiI	CCGC	2 cut(s)	499, 840
SspMI	CTAG	2 cut(s)	641, 740
StyI	CCWWGG	1 cut(s)	581
TaaI	ACNGT	2 cut(s)	175, 309
TaiI	ACGT	1 cut(s)	862
TaqI	TCGA	4 cut(s)	8, 48, 539, 919
TaqII	GACCGA	1 cut(s)	518
TasI	AATT	4 cut(s)	115, 211, 250, 679
TfiI	GAWTC	4 cut(s)	50, 611, 878, 941
Tru1I	TTAA	4 cut(s)	96, 456, 587, 803
Tru9I	TTAA	4 cut(s)	96, 456, 587, 803
TseFI	GTSAC	2 cut(s)	154, 387
TseI	GCWGC	4 cut(s)	236, 431, 554, 557
Tsp45I	GTSAC	2 cut(s)	154, 387
TspDTI	ATGAA	5 cut(s)	45, 94, 371, 495, 810
VneI	GTGCAC	1 cut(s)	776
VpaK11BI	GGWCC	3 cut(s)	421, 530, 623
XapI	RAATTY	2 cut(s)	115, 250
XspI	CTAG	2 cut(s)	641, 740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.