Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001987

Physical Location & Seq

Genomic Coordinates Forward (+)

409699 .. 411770

Gene Structure 2072 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G02080.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGAGGAGATTCTAGAGAATCTTAATGAGTTCATCAAACTGAATTCATCGTCACAAGGGGGAAGGAGGATTGTATGTGTGACTTCAGGGGGAACAACGGTTCCATTGGAGCAACGATGTGTTAGGTATATCGATAATTTCAGCTCCGGAAACAGAGGTGCTGCTTCTACTGAGAATTTCGTCAAGGCTGGATATGCTGTGATATTTCTGTATAGGAGGGGAACTTGCCAACCGTATTGTCGATCTCTTCCCGATGATCCATTCCTTGAATGTTTTGAGTTTTCTGATAAGACTAACATTCAAGGCAGCTTACTAAAACTCCCATTCTCAACCATATATGAGTATCTTCAGATGTTGCGGTTGATTGCAGAGGCATTGAAAGATGTTGGTCCATGTTCAATGTTTTATCTTGCTGCTGCTGTATCTGACTTCTATGTGCCATGGAAGAGCATGACAGAGCACAAAATAGAATCAGGATCTGGTCCTTTAGACATAAGACTAGCTCAAGTCCCTAAAATGCTATCAGTCTTGAGATCAAATTGGGCTCCAAAGGCCTTCTGCATATCATTCAAGCTTGAGACAGACTCAAAGATTCTGATGGAGAAGGCTACAAAGGCTCTAAGAAAATACAAAGTGCACGCAGTTGTAGCCAATGAGCTATCAACCCGTAAGGAAGAAGTTGTGGTTGTTTCAAGCAGCGGTAATGTTGTGGTTAGACGCGAATGCGATAAGCCTGAATCTTTTGTTGAAGATAATCTCATTCGTCTCATCGTAGATCGACATTCAACATACATCAAAGAATCTCACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004632 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009987 GO:0015936 GO:0015937 GO:0016874 GO:0016879 GO:0016881 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

DFP

Protein Analysis

270

Amino Acids

30.49

Weight (kDa)

8.35

Isoelectric Point (pI)

44.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DFP	PF04127	68 - 172	1.8e-11	DNA/pantothenate metabolism flavoprotein C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12350 AT1G12350 AT5G02080 AT5G02080 AT5G02080 AT5G02080 AT5G02080 AT5G02080 AT5G02080
fragaria_vesca	FvH4_5g38402 FvH4_5g38402 FvH4_5g38420 FvH4_5g38420 FvH4_7g08221 FvH4_7g08221
malus_domestica	MD08G1174000.v1.1 MD15G1360400.v1.1
prunus_persica	Prupe.1G507900_v2.0.a1 Prupe.1G507900_v2.0.a1 Prupe.1G507900_v2.0.a1 Prupe.1G507900_v2.0.a1
pyrus_communis	pycom08g14920 pycom15g32230
rosa_chinensis	RchiOBHm_Chr1g0340891 RchiOBHm_Chr1g0340911 RchiOBHm_Chr7g0240421
rosa_laevigata	RLG00000000678 RLG00000029049
rosa_multiflora	Rmu_sc0001211.1_g000112 Rmu_sc0002676.1_g000001
rosa_roxburghii	Rroxscaffold_3G00220100
rosa_rugosa	Rorug01G0160900.1 Rorug07G0335900
rosa_samantha	Rh1AG175900 Rh1BG143900 Rh1CG163800 Rh1DG175600 Rh7AG490200 Rh7BG463100 Rh7CG506600 Rh7DG474200
rosa_wichuraiana	Rw0G004950 Rw1G014660 Rw7G041000 Rw7G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	720
AccIII	TCCGGA	1 cut(s)	146
AciI	CCGC	2 cut(s)	358, 699
AclWI	GGATC	2 cut(s)	251, 484
AcsI	RAATTY	2 cut(s)	43, 175
AcuI	CTGAAG	2 cut(s)	69, 332
AgsI	TTSAA	8 cut(s)	269, 302, 379, 399, 571, 693, 749, 786
AloI	GAACNNNNNNTCC	4 cut(s)	84, 85, 116, 117
AluBI	AGCT	5 cut(s)	144, 309, 503, 574, 658
AluI	AGCT	5 cut(s)	144, 309, 503, 574, 658
Alw21I	GWGCWC	2 cut(s)	462, 639
Alw26I	GTCTC	2 cut(s)	572, 770
Alw44I	GTGCAC	1 cut(s)	635
AlwI	GGATC	2 cut(s)	251, 484
AlwNI	CAGNNNCTG	1 cut(s)	479
Aor13HI	TCCGGA	1 cut(s)	146
AoxI	GGCC	1 cut(s)	552
ApaLI	GTGCAC	1 cut(s)	635
ApeKI	GCWGC	5 cut(s)	161, 306, 413, 416, 696
ApoI	RAATTY	2 cut(s)	43, 175
AspS9I	GGNCC	2 cut(s)	389, 482
AvaII	GGWCC	2 cut(s)	389, 482
BaeGI	GKGCMC	1 cut(s)	639
BanII	GRGCYC	1 cut(s)	547
Bbv12I	GWGCWC	2 cut(s)	462, 639
BbvI	GCAGC	5 cut(s)	148, 318, 400, 403, 708
BccI	CCATC	1 cut(s)	592
BcoDI	GTCTC	2 cut(s)	572, 770
BfaI	CTAG	2 cut(s)	14, 500
BisI	GCNGC	5 cut(s)	162, 307, 414, 417, 697
BlsI	GCNGC	5 cut(s)	163, 308, 415, 418, 698
Bme18I	GGWCC	2 cut(s)	389, 482
BmgT120I	GGNCC	2 cut(s)	389, 482
BmiI	GGNNCC	2 cut(s)	102, 546
BplI	GAGNNNNNCTC	2 cut(s)	569, 601
BpuEI	CTTGAG	3 cut(s)	489, 550, 596
Bsa29I	ATCGAT	1 cut(s)	132
BsaJI	CCNNGG	1 cut(s)	440
BsaWI	WCCGGW	1 cut(s)	146
BsaXI	ACNNNNNCTCC	2 cut(s)	303, 333
BseAI	TCCGGA	1 cut(s)	146
BseCI	ATCGAT	1 cut(s)	132
BseDI	CCNNGG	1 cut(s)	440
BseMII	CTCAG	1 cut(s)	162
BseRI	GAGGAG	1 cut(s)	20
BseSI	GKGCMC	1 cut(s)	639
BseXI	GCAGC	5 cut(s)	148, 318, 400, 403, 708
Bsh1236I	CGCG	1 cut(s)	720
BshFI	GGCC	1 cut(s)	554
BshVI	ATCGAT	1 cut(s)	132
BsiHKAI	GWGCWC	2 cut(s)	462, 639
BsiSI	CCGG	1 cut(s)	147
BslFI	GGGAC	1 cut(s)	494
BsmAI	GTCTC	2 cut(s)	572, 770
BsmBI	CGTCTC	1 cut(s)	770
BsmFI	GGGAC	1 cut(s)	494
BsmI	GAATGC	1 cut(s)	728
BsnI	GGCC	1 cut(s)	554
Bsp1286I	GDGCHC	3 cut(s)	462, 547, 639
Bsp13I	TCCGGA	1 cut(s)	146
Bsp143I	GATC	5 cut(s)	242, 256, 476, 533, 775
Bsp19I	CCATGG	1 cut(s)	440
BspACI	CCGC	2 cut(s)	358, 699
BspANI	GGCC	1 cut(s)	554
BspCNI	CTCAG	1 cut(s)	163
BspDI	ATCGAT	1 cut(s)	132
BspEI	TCCGGA	1 cut(s)	146
BspFNI	CGCG	1 cut(s)	720
BspLI	GGNNCC	2 cut(s)	102, 546
BspPI	GGATC	2 cut(s)	251, 484
BspQI	GCTCTTC	1 cut(s)	440
BssECI	CCNNGG	1 cut(s)	440
BssMI	GATC	5 cut(s)	242, 256, 476, 533, 775
BssT1I	CCWWGG	1 cut(s)	440
Bst4CI	ACNGT	2 cut(s)	100, 234
Bst6I	CTCTTC	2 cut(s)	252, 440
BstC8I	GCNNGC	1 cut(s)	639
BstDEI	CTNAG	2 cut(s)	171, 620
BstDSI	CCRYGG	1 cut(s)	440
BstFNI	CGCG	1 cut(s)	720
BstKTI	GATC	5 cut(s)	245, 259, 479, 536, 778
BstMAI	GTCTC	2 cut(s)	572, 770
BstMBI	GATC	5 cut(s)	242, 256, 476, 533, 775
BstMWI	GCNNNNNNNGC	4 cut(s)	194, 551, 614, 647
BstSLI	GKGCMC	1 cut(s)	639
BstUI	CGCG	1 cut(s)	720
BstV1I	GCAGC	5 cut(s)	148, 318, 400, 403, 708
BstX2I	RGATCY	1 cut(s)	476
BstYI	RGATCY	1 cut(s)	476
Bsu15I	ATCGAT	1 cut(s)	132
BsuRI	GGCC	1 cut(s)	554
BsuTUI	ATCGAT	1 cut(s)	132
BtgI	CCRYGG	1 cut(s)	440
Cac8I	GCNNGC	1 cut(s)	639
CaiI	CAGNNNCTG	1 cut(s)	479
Cfr13I	GGNCC	2 cut(s)	389, 482
ClaI	ATCGAT	1 cut(s)	132
CseI	GACGC	1 cut(s)	726
CviAII	CATG	3 cut(s)	393, 441, 451
DdeI	CTNAG	2 cut(s)	171, 620
DpnI	GATC	5 cut(s)	244, 258, 478, 535, 777
DpnII	GATC	5 cut(s)	242, 256, 476, 533, 775
Eam1104I	CTCTTC	2 cut(s)	252, 440
EarI	CTCTTC	2 cut(s)	252, 440
Eco130I	CCWWGG	1 cut(s)	440
Eco147I	AGGCCT	1 cut(s)	554
Eco24I	GRGCYC	1 cut(s)	547
Eco47I	GGWCC	2 cut(s)	389, 482
Eco57I	CTGAAG	2 cut(s)	69, 332
EcoRI	GAATTC	1 cut(s)	43
EcoT14I	CCWWGG	1 cut(s)	440
EcoT38I	GRGCYC	1 cut(s)	547
ErhI	CCWWGG	1 cut(s)	440
Esp3I	CGTCTC	1 cut(s)	770
FaeI	CATG	3 cut(s)	396, 444, 454
FaqI	GGGAC	1 cut(s)	494
FatI	CATG	3 cut(s)	392, 440, 450
Fnu4HI	GCNGC	5 cut(s)	162, 307, 414, 417, 697
FriOI	GRGCYC	1 cut(s)	547
Fsp4HI	GCNGC	5 cut(s)	162, 307, 414, 417, 697
FspBI	CTAG	2 cut(s)	14, 500
GluI	GCNGC	5 cut(s)	162, 307, 414, 417, 697
HaeIII	GGCC	1 cut(s)	554
HapII	CCGG	1 cut(s)	147
HgaI	GACGC	1 cut(s)	726
Hin1II	CATG	3 cut(s)	396, 444, 454
HindIII	AAGCTT	1 cut(s)	572
HinfI	GANTC	7 cut(s)	10, 19, 470, 584, 592, 737, 800
HpaII	CCGG	1 cut(s)	147
Hpy166II	GTNNAC	1 cut(s)	637
Hpy188I	TCNGA	4 cut(s)	286, 351, 427, 597
Hpy188III	TCNNGA	5 cut(s)	14, 147, 251, 474, 529
Hpy8I	GTNNAC	1 cut(s)	637
HpyAV	CCTTC	3 cut(s)	57, 565, 598
HpyCH4III	ACNGT	2 cut(s)	100, 234
HpyCH4V	TGCA	3 cut(s)	368, 561, 637
HpyF10VI	GCNNNNNNNGC	4 cut(s)	194, 551, 614, 647
HpyF3I	CTNAG	2 cut(s)	171, 620
Hsp92II	CATG	3 cut(s)	396, 444, 454
Kpn2I	TCCGGA	1 cut(s)	146
Kzo9I	GATC	5 cut(s)	242, 256, 476, 533, 775
LguI	GCTCTTC	1 cut(s)	440
LmnI	GCTCC	3 cut(s)	109, 149, 550
LpnPI	CCDG	6 cut(s)	72, 160, 174, 459, 465, 747
Lsp1109I	GCAGC	5 cut(s)	148, 318, 400, 403, 708
MaeI	CTAG	2 cut(s)	14, 500
MaeIII	GTNAC	2 cut(s)	51, 79
MalI	GATC	5 cut(s)	244, 258, 478, 535, 777
MboI	GATC	5 cut(s)	242, 256, 476, 533, 775
MboII	GAAGA	5 cut(s)	239, 338, 457, 686, 761
MflI	RGATCY	1 cut(s)	476
MhlI	GDGCHC	3 cut(s)	462, 547, 639
MluCI	AATT	4 cut(s)	43, 136, 175, 538
MlyI	GAGTC	1 cut(s)	578
MnlI	CCTC	4 cut(s)	60, 149, 210, 364
MroI	TCCGGA	1 cut(s)	146
MseI	TTAA	1 cut(s)	24
MspA1I	CMGCKG	1 cut(s)	699
MspI	CCGG	1 cut(s)	147
Mva1269I	GAATGC	1 cut(s)	728
MvnI	CGCG	1 cut(s)	720
MwoI	GCNNNNNNNGC	4 cut(s)	194, 551, 614, 647
NcoI	CCATGG	1 cut(s)	440
NdeII	GATC	5 cut(s)	242, 256, 476, 533, 775
NlaIII	CATG	3 cut(s)	396, 444, 454
NlaIV	GGNNCC	2 cut(s)	102, 546
NmuCI	GTSAC	2 cut(s)	51, 79
PceI	AGGCCT	1 cut(s)	554
PciSI	GCTCTTC	1 cut(s)	440
PctI	GAATGC	1 cut(s)	728
PfeI	GAWTC	6 cut(s)	10, 19, 470, 592, 737, 800
PkrI	GCNGC	5 cut(s)	163, 308, 415, 418, 698
PleI	GAGTC	1 cut(s)	578
PpsI	GAGTC	1 cut(s)	578
PspN4I	GGNNCC	2 cut(s)	102, 546
PspPI	GGNCC	2 cut(s)	389, 482
PstNI	CAGNNNCTG	1 cut(s)	479
PsuI	RGATCY	1 cut(s)	476
SapI	GCTCTTC	1 cut(s)	440
SaqAI	TTAA	1 cut(s)	24
SatI	GCNGC	5 cut(s)	162, 307, 414, 417, 697
Sau3AI	GATC	5 cut(s)	242, 256, 476, 533, 775
Sau96I	GGNCC	2 cut(s)	389, 482
SchI	GAGTC	1 cut(s)	578
SduI	GDGCHC	3 cut(s)	462, 547, 639
SetI	ASST	7 cut(s)	128, 146, 160, 311, 505, 576, 660
SinI	GGWCC	2 cut(s)	389, 482
SmlI	CTYRAG	3 cut(s)	504, 529, 575
SmoI	CTYRAG	3 cut(s)	504, 529, 575
Sse9I	AATT	4 cut(s)	43, 136, 175, 538
SseBI	AGGCCT	1 cut(s)	554
SsiI	CCGC	2 cut(s)	358, 699
SspMI	CTAG	2 cut(s)	14, 500
StuI	AGGCCT	1 cut(s)	554
StyI	CCWWGG	1 cut(s)	440
TaaI	ACNGT	2 cut(s)	100, 234
TaqI	TCGA	3 cut(s)	132, 241, 778
TasI	AATT	4 cut(s)	43, 136, 175, 538
TfiI	GAWTC	6 cut(s)	10, 19, 470, 592, 737, 800
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TseFI	GTSAC	2 cut(s)	51, 79
TseI	GCWGC	5 cut(s)	161, 306, 413, 416, 696
Tsp45I	GTSAC	2 cut(s)	51, 79
TspDTI	ATGAA	2 cut(s)	22, 36
VneI	GTGCAC	1 cut(s)	635
VpaK11BI	GGWCC	2 cut(s)	389, 482
XapI	RAATTY	2 cut(s)	43, 175
XbaI	TCTAGA	1 cut(s)	13
XspI	CTAG	2 cut(s)	14, 500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.