Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001987

Physical Location & Seq

Genomic Coordinates Reverse (-)

23809195 .. 23811815

Gene Structure 2621 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG143900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGACACAACTTTGTTTCATATTCACAGTACACCAATCCCATTCACAAGCAGTGAGGAGTGCTATCACTAAGAGTCATGCTGCAGTAGCAGACGGCCTCTTGCTGAAACTTCCCTTTACAACAATATTTGAGTATCTCCAGATGTTGCAGATGGTTGCGTTTACAATGCGAAGTATTGGACCACATGCCATGCTATATCTTGCAGCAGCAGTATCTGACTTTTACGTCCCTTGGAAGAGCATGGCAGAGCACAAAATTCAGTCAGGGTCTGGTCCATTGGATATGCGACTTGTTCAGGTGCCAAAGATGCTCTTAGTGCTGAGGAAAGACTGGGCTCCCCTGGCCTTCTGCATATCATTCAAGCTAGAAACAGATTCAAAGATCCTGTTAGAGAAGGCTGATATGGCTCGTAGGAAGTACAAGATGCATATGGTTGTAGCCAATGAGCTTTTGAGCCGAAAAGAAGAGGTTGTAGTTGTCACCAGCAATGAAAAGATTCTAGTTCGCCGAAACAAGTCTCTGGGTGTTGATGATGTGGAGAGCGCCCTTATTGAGCTTCTTGTGGAGAGGCATTCAGCTTATGTTGATCAGATCAAGACTGATTTTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004632 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009987 GO:0015936 GO:0015937 GO:0016874 GO:0016879 GO:0016881 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

DFP

Protein Analysis

203

Amino Acids

23.07

Weight (kDa)

9.04

Isoelectric Point (pI)

45.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DFP	PF04127	50 - 172	5.7e-11	DNA/pantothenate metabolism flavoprotein C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12350 AT1G12350 AT5G02080 AT5G02080 AT5G02080 AT5G02080 AT5G02080 AT5G02080 AT5G02080
fragaria_vesca	FvH4_5g38402 FvH4_5g38402 FvH4_5g38420 FvH4_5g38420 FvH4_7g08221 FvH4_7g08221
malus_domestica	MD08G1174000.v1.1 MD15G1360400.v1.1
prunus_persica	Prupe.1G507900_v2.0.a1 Prupe.1G507900_v2.0.a1 Prupe.1G507900_v2.0.a1 Prupe.1G507900_v2.0.a1
pyrus_communis	pycom08g14920 pycom15g32230
rosa_chinensis	RchiOBHm_Chr1g0340891 RchiOBHm_Chr1g0340911 RchiOBHm_Chr7g0240421
rosa_laevigata	RLG00000000678 RLG00000029049
rosa_multiflora	Rmu_sc0001211.1_g000112 Rmu_sc0002676.1_g000001
rosa_roxburghii	Rroxscaffold_3G00220100
rosa_rugosa	Rorug01G0160900.1 Rorug07G0335900
rosa_samantha	Rh1AG175900 Rh1BG143900 Rh1CG163800 Rh1DG175600 Rh7AG490200 Rh7BG463100 Rh7CG506600 Rh7DG474200
rosa_wichuraiana	Rw0G004950 Rw1G014660 Rw7G041000 Rw7G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	224
AccB1I	GGYRCC	1 cut(s)	298
AclWI	GGATC	1 cut(s)	376
AcsI	RAATTY	1 cut(s)	255
AfaI	GTAC	2 cut(s)	30, 419
AgsI	TTSAA	2 cut(s)	361, 378
AjnI	CCWGG	1 cut(s)	339
AluBI	AGCT	4 cut(s)	364, 448, 556, 578
AluI	AGCT	4 cut(s)	364, 448, 556, 578
Alw21I	GWGCWC	1 cut(s)	252
Alw26I	GTCTC	1 cut(s)	522
AlwI	GGATC	1 cut(s)	376
AlwNI	CAGNNNCTG	2 cut(s)	215, 269
AoxI	GGCC	2 cut(s)	94, 342
ApeKI	GCWGC	3 cut(s)	80, 203, 206
ApoI	RAATTY	1 cut(s)	255
Asp700I	GAANNNNTTC	1 cut(s)	495
AspLEI	GCGC	1 cut(s)	545
AspS9I	GGNCC	2 cut(s)	179, 272
AsuHPI	GGTGA	1 cut(s)	472
AvaII	GGWCC	2 cut(s)	179, 272
BanI	GGYRCC	1 cut(s)	298
BanII	GRGCYC	1 cut(s)	337
Bbv12I	GWGCWC	1 cut(s)	252
BbvCI	CCTCAGC	1 cut(s)	320
BbvI	GCAGC	3 cut(s)	67, 215, 218
BccI	CCATC	1 cut(s)	145
BceAI	ACGGC	1 cut(s)	109
BciT130I	CCWGG	1 cut(s)	341
BclI	TGATCA	1 cut(s)	586
BcoDI	GTCTC	1 cut(s)	522
BfaI	CTAG	2 cut(s)	365, 500
BfmI	CTRYAG	1 cut(s)	81
BfoI	RGCGCY	1 cut(s)	546
BisI	GCNGC	3 cut(s)	81, 204, 207
BlsI	GCNGC	3 cut(s)	82, 205, 208
Bme1390I	CCNGG	1 cut(s)	341
Bme18I	GGWCC	2 cut(s)	179, 272
BmgT120I	GGNCC	2 cut(s)	179, 272
BmiI	GGNNCC	2 cut(s)	300, 336
BmrFI	CCNGG	1 cut(s)	341
BmrI	ACTGGG	1 cut(s)	340
BmsI	GCATC	2 cut(s)	297, 414
BmuI	ACTGGG	1 cut(s)	340
BpmI	CTGGAG	1 cut(s)	122
Bpu10I	CCTNAGC	1 cut(s)	320
BsaJI	CCNNGG	2 cut(s)	230, 339
Bse1I	ACTGG	1 cut(s)	335
Bse3DI	GCAATG	1 cut(s)	493
BseBI	CCWGG	1 cut(s)	341
BseDI	CCNNGG	2 cut(s)	230, 339
BseMI	GCAATG	1 cut(s)	493
BseMII	CTCAG	1 cut(s)	311
BseNI	ACTGG	1 cut(s)	335
BseRI	GAGGAG	1 cut(s)	70
BseXI	GCAGC	3 cut(s)	67, 215, 218
BshFI	GGCC	2 cut(s)	96, 344
BshNI	GGYRCC	1 cut(s)	298
BsiHKAI	GWGCWC	1 cut(s)	252
BslFI	GGGAC	1 cut(s)	212
BsmAI	GTCTC	1 cut(s)	522
BsmFI	GGGAC	1 cut(s)	212
BsmI	GAATGC	1 cut(s)	571
BsnI	GGCC	2 cut(s)	96, 344
Bsp1286I	GDGCHC	2 cut(s)	252, 337
Bsp143I	GATC	3 cut(s)	381, 586, 591
BspANI	GGCC	2 cut(s)	96, 344
BspCNI	CTCAG	1 cut(s)	312
BspLI	GGNNCC	2 cut(s)	300, 336
BspMAI	CTGCAG	1 cut(s)	85
BspPI	GGATC	1 cut(s)	376
BspQI	GCTCTTC	1 cut(s)	230
BspT107I	GGYRCC	1 cut(s)	298
BsrDI	GCAATG	1 cut(s)	493
BsrI	ACTGG	1 cut(s)	335
BssECI	CCNNGG	2 cut(s)	230, 339
BssMI	GATC	3 cut(s)	381, 586, 591
BssT1I	CCWWGG	1 cut(s)	230
Bst2UI	CCWGG	1 cut(s)	341
Bst4CI	ACNGT	1 cut(s)	28
Bst6I	CTCTTC	2 cut(s)	230, 459
BstDEI	CTNAG	3 cut(s)	69, 313, 320
BstH2I	RGCGCY	1 cut(s)	546
BstHHI	GCGC	1 cut(s)	545
BstKTI	GATC	3 cut(s)	384, 589, 594
BstMAI	GTCTC	1 cut(s)	522
BstMBI	GATC	3 cut(s)	381, 586, 591
BstMWI	GCNNNNNNNGC	5 cut(s)	86, 307, 316, 341, 404
BstNI	CCWGG	1 cut(s)	341
BstNSI	RCATGY	1 cut(s)	188
BstSCI	CCNGG	1 cut(s)	339
BstSFI	CTRYAG	1 cut(s)	81
BstV1I	GCAGC	3 cut(s)	67, 215, 218
BstX2I	RGATCY	1 cut(s)	381
BstYI	RGATCY	1 cut(s)	381
BsuRI	GGCC	2 cut(s)	96, 344
BtsI	GCAGTG	1 cut(s)	57
BtsIMutI	CAGTG	1 cut(s)	57
CaiI	CAGNNNCTG	2 cut(s)	215, 269
CfoI	GCGC	1 cut(s)	545
Cfr13I	GGNCC	2 cut(s)	179, 272
Csp6I	GTAC	2 cut(s)	29, 418
CviAII	CATG	4 cut(s)	77, 185, 190, 241
CviQI	GTAC	2 cut(s)	29, 418
DdeI	CTNAG	3 cut(s)	69, 313, 320
DpnI	GATC	3 cut(s)	383, 588, 593
DpnII	GATC	3 cut(s)	381, 586, 591
DrdI	GACNNNNNNGTC	1 cut(s)	224
DseDI	GACNNNNNNGTC	1 cut(s)	224
Eam1104I	CTCTTC	2 cut(s)	230, 459
EarI	CTCTTC	2 cut(s)	230, 459
Eco130I	CCWWGG	1 cut(s)	230
Eco24I	GRGCYC	1 cut(s)	337
Eco47I	GGWCC	2 cut(s)	179, 272
EcoRII	CCWGG	1 cut(s)	339
EcoT14I	CCWWGG	1 cut(s)	230
EcoT22I	ATGCAT	1 cut(s)	429
EcoT38I	GRGCYC	1 cut(s)	337
ErhI	CCWWGG	1 cut(s)	230
FaeI	CATG	4 cut(s)	80, 188, 193, 244
FalI	AAGNNNNNCTT	2 cut(s)	296, 328
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	4 cut(s)	76, 184, 189, 240
FauNDI	CATATG	1 cut(s)	429
FbaI	TGATCA	1 cut(s)	586
Fnu4HI	GCNGC	3 cut(s)	81, 204, 207
FriOI	GRGCYC	1 cut(s)	337
Fsp4HI	GCNGC	3 cut(s)	81, 204, 207
FspBI	CTAG	2 cut(s)	365, 500
GlaI	GCGC	1 cut(s)	544
GluI	GCNGC	3 cut(s)	81, 204, 207
GsuI	CTGGAG	1 cut(s)	122
HaeII	RGCGCY	1 cut(s)	546
HaeIII	GGCC	2 cut(s)	96, 344
HhaI	GCGC	1 cut(s)	545
Hin1II	CATG	4 cut(s)	80, 188, 193, 244
Hin6I	GCGC	1 cut(s)	543
HinP1I	GCGC	1 cut(s)	543
HinfI	GANTC	3 cut(s)	73, 374, 496
HphI	GGTGA	1 cut(s)	472
Hpy166II	GTNNAC	2 cut(s)	31, 162
Hpy188I	TCNGA	2 cut(s)	217, 591
Hpy188III	TCNNGA	2 cut(s)	139, 595
Hpy8I	GTNNAC	2 cut(s)	31, 162
HpyAV	CCTTC	2 cut(s)	355, 388
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	5 cut(s)	83, 148, 203, 351, 427
HpyF10VI	GCNNNNNNNGC	5 cut(s)	86, 307, 316, 341, 404
HpyF3I	CTNAG	3 cut(s)	69, 313, 320
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	4 cut(s)	80, 188, 193, 244
HspAI	GCGC	1 cut(s)	543
Ksp22I	TGATCA	1 cut(s)	586
Kzo9I	GATC	3 cut(s)	381, 586, 591
LguI	GCTCTTC	1 cut(s)	230
LmnI	GCTCC	1 cut(s)	340
Lsp1109I	GCAGC	3 cut(s)	67, 215, 218
LweI	GCATC	2 cut(s)	297, 414
MaeI	CTAG	2 cut(s)	365, 500
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	1 cut(s)	478
MalI	GATC	3 cut(s)	383, 588, 593
MboI	GATC	3 cut(s)	381, 586, 591
MboII	GAAGA	2 cut(s)	247, 476
MflI	RGATCY	1 cut(s)	381
MhlI	GDGCHC	2 cut(s)	252, 337
MluCI	AATT	1 cut(s)	255
MlyI	GAGTC	1 cut(s)	82
MnlI	CCTC	5 cut(s)	48, 107, 315, 460, 561
Mph1103I	ATGCAT	1 cut(s)	429
MroXI	GAANNNNTTC	1 cut(s)	495
MspR9I	CCNGG	1 cut(s)	341
Mva1269I	GAATGC	1 cut(s)	571
MvaI	CCWGG	1 cut(s)	341
MwoI	GCNNNNNNNGC	5 cut(s)	86, 307, 316, 341, 404
NdeI	CATATG	1 cut(s)	429
NdeII	GATC	3 cut(s)	381, 586, 591
NlaIII	CATG	4 cut(s)	80, 188, 193, 244
NlaIV	GGNNCC	2 cut(s)	300, 336
NmuCI	GTSAC	1 cut(s)	478
NsiI	ATGCAT	1 cut(s)	429
NspI	RCATGY	1 cut(s)	188
PciSI	GCTCTTC	1 cut(s)	230
PctI	GAATGC	1 cut(s)	571
PdmI	GAANNNNTTC	1 cut(s)	495
PfeI	GAWTC	2 cut(s)	374, 496
PkrI	GCNGC	3 cut(s)	82, 205, 208
PleI	GAGTC	1 cut(s)	81
PpsI	GAGTC	1 cut(s)	81
Psp6I	CCWGG	1 cut(s)	339
PspGI	CCWGG	1 cut(s)	339
PspN4I	GGNNCC	2 cut(s)	300, 336
PspPI	GGNCC	2 cut(s)	179, 272
PstI	CTGCAG	1 cut(s)	85
PstNI	CAGNNNCTG	2 cut(s)	215, 269
PsuI	RGATCY	1 cut(s)	381
RsaI	GTAC	2 cut(s)	30, 419
RsaNI	GTAC	2 cut(s)	29, 418
SapI	GCTCTTC	1 cut(s)	230
SatI	GCNGC	3 cut(s)	81, 204, 207
Sau3AI	GATC	3 cut(s)	381, 586, 591
Sau96I	GGNCC	2 cut(s)	179, 272
SchI	GAGTC	1 cut(s)	82
ScrFI	CCNGG	1 cut(s)	341
SduI	GDGCHC	2 cut(s)	252, 337
SetI	ASST	7 cut(s)	228, 300, 366, 450, 471, 558, 580
SfaNI	GCATC	2 cut(s)	297, 414
SfcI	CTRYAG	1 cut(s)	81
SinI	GGWCC	2 cut(s)	179, 272
Sse9I	AATT	1 cut(s)	255
SspI	AATATT	1 cut(s)	126
SspMI	CTAG	2 cut(s)	365, 500
StyD4I	CCNGG	1 cut(s)	339
StyI	CCWWGG	1 cut(s)	230
TaaI	ACNGT	1 cut(s)	28
TaiI	ACGT	1 cut(s)	228
TasI	AATT	1 cut(s)	255
TatI	WGTACW	2 cut(s)	28, 417
TfiI	GAWTC	2 cut(s)	374, 496
TscAI	CASTG	1 cut(s)	57
TseFI	GTSAC	1 cut(s)	478
TseI	GCWGC	3 cut(s)	80, 203, 206
Tsp45I	GTSAC	1 cut(s)	478
TspDTI	ATGAA	2 cut(s)	7, 504
TspRI	CASTG	1 cut(s)	57
VpaK11BI	GGWCC	2 cut(s)	179, 272
XapI	RAATTY	1 cut(s)	255
XceI	RCATGY	1 cut(s)	188
XmnI	GAANNNNTTC	1 cut(s)	495
XspI	CTAG	2 cut(s)	365, 500
Zsp2I	ATGCAT	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.