Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001987

Physical Location & Seq

Genomic Coordinates Reverse (-)

63969787 .. 63971011

Gene Structure 1225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G041000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGTTGCAGATGGTTGCGTTTACAATACGAAGTATTGGACCACATGCCATGCTATATCTTGCAGCAGCAGTATCTGACTTTTACGTCCCTTGGAAGAGCATGGCAGAACACAAAATTCAGTCAGGCTCTGGTCCATTGGATATGCGACTTGTTCAGGTGCCAAAGATGCTCTTAGTGCTGAGGAAAGAATGGGCCCCCATGGCCTTCTGCATATCATTCAAGCTAGAAACAGATTCAAAGATCCTGTTAGAGAAAGCTGATATGGCTCTTAGGAAGTACAAGATGCATGAAGAGGTTGTAGTTGTCACCAGCAATGAAAAGATTTCAGTTCGCCGAAACAAGTCTCTGAGTGTTGATGATGTGGAGAGCCCCCTGGTTGAGCTTCTTGTGGAGAAGCATTCAGCCTATGTTGAGAATTCTGATCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004632 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009987 GO:0015936 GO:0015937 GO:0016874 GO:0016879 GO:0016881 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

DFP

Protein Analysis

142

Amino Acids

16.14

Weight (kDa)

6.91

Isoelectric Point (pI)

45.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DFP	PF04127	3 - 96	7.9e-07	DNA/pantothenate metabolism flavoprotein C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12350 AT1G12350 AT5G02080 AT5G02080 AT5G02080 AT5G02080 AT5G02080 AT5G02080 AT5G02080
fragaria_vesca	FvH4_5g38402 FvH4_5g38402 FvH4_5g38420 FvH4_5g38420 FvH4_7g08221 FvH4_7g08221
malus_domestica	MD08G1174000.v1.1 MD15G1360400.v1.1
prunus_persica	Prupe.1G507900_v2.0.a1 Prupe.1G507900_v2.0.a1 Prupe.1G507900_v2.0.a1 Prupe.1G507900_v2.0.a1
pyrus_communis	pycom08g14920 pycom15g32230
rosa_chinensis	RchiOBHm_Chr1g0340891 RchiOBHm_Chr1g0340911 RchiOBHm_Chr7g0240421
rosa_laevigata	RLG00000000678 RLG00000029049
rosa_multiflora	Rmu_sc0001211.1_g000112 Rmu_sc0002676.1_g000001
rosa_roxburghii	Rroxscaffold_3G00220100
rosa_rugosa	Rorug01G0160900.1 Rorug07G0335900
rosa_samantha	Rh1AG175900 Rh1BG143900 Rh1CG163800 Rh1DG175600 Rh7AG490200 Rh7BG463100 Rh7CG506600 Rh7DG474200
rosa_wichuraiana	Rw0G004950 Rw1G014660 Rw7G041000 Rw7G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	83
AccB1I	GGYRCC	1 cut(s)	157
AclWI	GGATC	1 cut(s)	235
AcsI	RAATTY	2 cut(s)	114, 415
AfaI	GTAC	1 cut(s)	278
AgsI	TTSAA	2 cut(s)	220, 237
AjnI	CCWGG	1 cut(s)	372
AluBI	AGCT	3 cut(s)	223, 257, 382
AluI	AGCT	3 cut(s)	223, 257, 382
Alw26I	GTCTC	1 cut(s)	348
AlwI	GGATC	1 cut(s)	235
AlwNI	CAGNNNCTG	2 cut(s)	74, 128
AoxI	GGCC	2 cut(s)	192, 201
ApaI	GGGCCC	1 cut(s)	196
ApeKI	GCWGC	2 cut(s)	62, 65
ApoI	RAATTY	2 cut(s)	114, 415
AspS9I	GGNCC	4 cut(s)	38, 131, 192, 193
AsuHPI	GGTGA	1 cut(s)	298
AvaII	GGWCC	2 cut(s)	38, 131
BaeGI	GKGCMC	1 cut(s)	196
BanI	GGYRCC	1 cut(s)	157
BanII	GRGCYC	2 cut(s)	196, 371
BbvCI	CCTCAGC	1 cut(s)	179
BbvI	GCAGC	2 cut(s)	74, 77
BccI	CCATC	1 cut(s)	4
BciT130I	CCWGG	1 cut(s)	374
BcoDI	GTCTC	1 cut(s)	348
BfaI	CTAG	1 cut(s)	224
BglI	GCCNNNNNGGC	1 cut(s)	200
BisI	GCNGC	2 cut(s)	63, 66
BlsI	GCNGC	2 cut(s)	64, 67
Bme1390I	CCNGG	1 cut(s)	374
Bme18I	GGWCC	2 cut(s)	38, 131
BmgT120I	GGNCC	4 cut(s)	38, 131, 192, 193
BmiI	GGNNCC	3 cut(s)	159, 194, 195
BmrFI	CCNGG	1 cut(s)	374
BmsI	GCATC	2 cut(s)	156, 273
Bpu10I	CCTNAGC	1 cut(s)	179
BsaJI	CCNNGG	3 cut(s)	89, 198, 372
Bse3DI	GCAATG	1 cut(s)	319
BseBI	CCWGG	1 cut(s)	374
BseDI	CCNNGG	3 cut(s)	89, 198, 372
BseMI	GCAATG	1 cut(s)	319
BseMII	CTCAG	2 cut(s)	170, 338
BseSI	GKGCMC	1 cut(s)	196
BseXI	GCAGC	2 cut(s)	74, 77
BshFI	GGCC	2 cut(s)	194, 203
BshNI	GGYRCC	1 cut(s)	157
BslFI	GGGAC	1 cut(s)	71
BsmAI	GTCTC	1 cut(s)	348
BsmFI	GGGAC	1 cut(s)	71
BsmI	GAATGC	1 cut(s)	397
BsnI	GGCC	2 cut(s)	194, 203
Bsp120I	GGGCCC	1 cut(s)	192
Bsp1286I	GDGCHC	2 cut(s)	196, 371
Bsp143I	GATC	2 cut(s)	240, 421
Bsp19I	CCATGG	1 cut(s)	198
BspANI	GGCC	2 cut(s)	194, 203
BspCNI	CTCAG	2 cut(s)	171, 339
BspLI	GGNNCC	3 cut(s)	159, 194, 195
BspPI	GGATC	1 cut(s)	235
BspQI	GCTCTTC	1 cut(s)	89
BspT107I	GGYRCC	1 cut(s)	157
BsrDI	GCAATG	1 cut(s)	319
BssECI	CCNNGG	3 cut(s)	89, 198, 372
BssMI	GATC	2 cut(s)	240, 421
BssT1I	CCWWGG	2 cut(s)	89, 198
Bst2UI	CCWGG	1 cut(s)	374
Bst6I	CTCTTC	2 cut(s)	89, 285
BstDEI	CTNAG	4 cut(s)	172, 179, 269, 347
BstDSI	CCRYGG	1 cut(s)	198
BstKTI	GATC	2 cut(s)	243, 424
BstMAI	GTCTC	1 cut(s)	348
BstMBI	GATC	2 cut(s)	240, 421
BstMWI	GCNNNNNNNGC	4 cut(s)	166, 175, 200, 263
BstNI	CCWGG	1 cut(s)	374
BstNSI	RCATGY	1 cut(s)	47
BstSCI	CCNGG	1 cut(s)	372
BstSLI	GKGCMC	1 cut(s)	196
BstV1I	GCAGC	2 cut(s)	74, 77
BstX2I	RGATCY	1 cut(s)	240
BstYI	RGATCY	1 cut(s)	240
BsuRI	GGCC	2 cut(s)	194, 203
BtgI	CCRYGG	1 cut(s)	198
CaiI	CAGNNNCTG	2 cut(s)	74, 128
Cfr13I	GGNCC	4 cut(s)	38, 131, 192, 193
Csp6I	GTAC	1 cut(s)	277
CviAII	CATG	5 cut(s)	44, 49, 100, 199, 287
CviJI	RGCY	9 cut(s)	126, 194, 203, 223, 257, 266, 369, 382, 404
CviKI_1	RGCY	9 cut(s)	126, 194, 203, 223, 257, 266, 369, 382, 404
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	4 cut(s)	172, 179, 269, 347
DpnI	GATC	2 cut(s)	242, 423
DpnII	GATC	2 cut(s)	240, 421
DrdI	GACNNNNNNGTC	1 cut(s)	83
DseDI	GACNNNNNNGTC	1 cut(s)	83
Eam1104I	CTCTTC	2 cut(s)	89, 285
EarI	CTCTTC	2 cut(s)	89, 285
Eco130I	CCWWGG	2 cut(s)	89, 198
Eco24I	GRGCYC	2 cut(s)	196, 371
Eco47I	GGWCC	2 cut(s)	38, 131
EcoO109I	RGGNCCY	1 cut(s)	193
EcoRI	GAATTC	1 cut(s)	415
EcoRII	CCWGG	1 cut(s)	372
EcoT14I	CCWWGG	2 cut(s)	89, 198
EcoT22I	ATGCAT	1 cut(s)	288
EcoT38I	GRGCYC	2 cut(s)	196, 371
ErhI	CCWWGG	2 cut(s)	89, 198
FaeI	CATG	5 cut(s)	47, 52, 103, 202, 290
FalI	AAGNNNNNCTT	2 cut(s)	155, 187
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	5 cut(s)	43, 48, 99, 198, 286
Fnu4HI	GCNGC	2 cut(s)	63, 66
FriOI	GRGCYC	2 cut(s)	196, 371
Fsp4HI	GCNGC	2 cut(s)	63, 66
FspBI	CTAG	1 cut(s)	224
GluI	GCNGC	2 cut(s)	63, 66
HaeIII	GGCC	2 cut(s)	194, 203
Hin1II	CATG	5 cut(s)	47, 52, 103, 202, 290
HinfI	GANTC	1 cut(s)	233
HphI	GGTGA	1 cut(s)	298
Hpy166II	GTNNAC	1 cut(s)	21
Hpy188I	TCNGA	3 cut(s)	76, 348, 421
Hpy8I	GTNNAC	1 cut(s)	21
HpyAV	CCTTC	1 cut(s)	214
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	4 cut(s)	7, 62, 210, 286
HpyF10VI	GCNNNNNNNGC	4 cut(s)	166, 175, 200, 263
HpyF3I	CTNAG	4 cut(s)	172, 179, 269, 347
HpySE526I	ACGT	1 cut(s)	84
Hsp92II	CATG	5 cut(s)	47, 52, 103, 202, 290
Kzo9I	GATC	2 cut(s)	240, 421
LguI	GCTCTTC	1 cut(s)	89
LpnPI	CCDG	7 cut(s)	108, 114, 140, 257, 322, 359, 386
Lsp1109I	GCAGC	2 cut(s)	74, 77
LweI	GCATC	2 cut(s)	156, 273
MaeI	CTAG	1 cut(s)	224
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	1 cut(s)	304
MalI	GATC	2 cut(s)	242, 423
MboI	GATC	2 cut(s)	240, 421
MboII	GAAGA	2 cut(s)	106, 302
MflI	RGATCY	1 cut(s)	240
MhlI	GDGCHC	2 cut(s)	196, 371
MluCI	AATT	2 cut(s)	114, 415
MnlI	CCTC	2 cut(s)	174, 286
Mph1103I	ATGCAT	1 cut(s)	288
MspR9I	CCNGG	1 cut(s)	374
Mva1269I	GAATGC	1 cut(s)	397
MvaI	CCWGG	1 cut(s)	374
MwoI	GCNNNNNNNGC	4 cut(s)	166, 175, 200, 263
NcoI	CCATGG	1 cut(s)	198
NdeII	GATC	2 cut(s)	240, 421
NlaIII	CATG	5 cut(s)	47, 52, 103, 202, 290
NlaIV	GGNNCC	3 cut(s)	159, 194, 195
NmuCI	GTSAC	1 cut(s)	304
NsiI	ATGCAT	1 cut(s)	288
NspI	RCATGY	1 cut(s)	47
PciSI	GCTCTTC	1 cut(s)	89
PctI	GAATGC	1 cut(s)	397
PfeI	GAWTC	1 cut(s)	233
PkrI	GCNGC	2 cut(s)	64, 67
Psp6I	CCWGG	1 cut(s)	372
PspGI	CCWGG	1 cut(s)	372
PspN4I	GGNNCC	3 cut(s)	159, 194, 195
PspOMI	GGGCCC	1 cut(s)	192
PspPI	GGNCC	4 cut(s)	38, 131, 192, 193
PstNI	CAGNNNCTG	2 cut(s)	74, 128
PsuI	RGATCY	1 cut(s)	240
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
SapI	GCTCTTC	1 cut(s)	89
SatI	GCNGC	2 cut(s)	63, 66
Sau3AI	GATC	2 cut(s)	240, 421
Sau96I	GGNCC	4 cut(s)	38, 131, 192, 193
ScrFI	CCNGG	1 cut(s)	374
SduI	GDGCHC	2 cut(s)	196, 371
SetI	ASST	6 cut(s)	87, 159, 225, 259, 297, 384
SfaNI	GCATC	2 cut(s)	156, 273
SfiI	GGCCNNNNNGGCC	1 cut(s)	200
SinI	GGWCC	2 cut(s)	38, 131
Sse9I	AATT	2 cut(s)	114, 415
SspMI	CTAG	1 cut(s)	224
StyD4I	CCNGG	1 cut(s)	372
StyI	CCWWGG	2 cut(s)	89, 198
TaiI	ACGT	1 cut(s)	87
TasI	AATT	2 cut(s)	114, 415
TatI	WGTACW	1 cut(s)	276
TfiI	GAWTC	1 cut(s)	233
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	2 cut(s)	62, 65
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	2 cut(s)	303, 330
VpaK11BI	GGWCC	2 cut(s)	38, 131
XapI	RAATTY	2 cut(s)	114, 415
XceI	RCATGY	1 cut(s)	47
XspI	CTAG	1 cut(s)	224
Zsp2I	ATGCAT	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.