Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001987

Physical Location & Seq

Genomic Coordinates Reverse (-)

28402696 .. 28406981

Gene Structure 4286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g38402.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCTCTAACAAATGTGTTGGAAATTCCTAAAGAAGTGCTGGATGCAGAAATCAAGTCCTTTTTTGACTCGGCTCCTCCTTTAAAGAACAGAGATGATGTCAGTGAAAAGCTTGAGGCTTTTGTTAAAAAGAACTCGCCACTTTCTGGAATTGGAGGAGCAAGGAGGTTGGTTTGTGTAACCTCTGGTGGTACCACAGTTCCTCTGGAGCAACGTTGTGTTCGCTACATTGACAATTTCAGCTCAGGTCACAGAGGAGCAGCTTCCACAGAGTACTTTTTGAAGGCTGGCTATGCTGTTATCTTTCTTTTTCGGAGGGGAACTTGCCAACCATATTGCAGATCTCTTCCTGATGATCCGTTACTTCAATGTCTAGAAATTGCGGACGAGTCAAACATTCAAGTACACCAGTCCCATTCACAAGCAGTGAGGAGTGCTATCACTAAGACTCATGCTGCAGTAGCAGACGGCCTCTTGCTGAAACTTCCCTTTACGACAATATTTGAGTATCTCCAGATGTTGCAGATGGTTGCGTTTACAATGCAAAGTATTGGACCACACGCCATGTTTTATCTTGCAGCGGCAGTATCTGACTTTTACGTCCCTTGGCAAAGCATGGTAATGATTAATAACTGCTTTATGTTTATGTGCCTTTTACTGTGTTTTCTGACTGCTTTCTACACCTCAAGAGGTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004632 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009987 GO:0015936 GO:0015937 GO:0016874 GO:0016879 GO:0016881 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

DFP

Protein Analysis

233

Amino Acids

25.89

Weight (kDa)

7.57

Isoelectric Point (pI)

45.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12350 AT1G12350 AT5G02080 AT5G02080 AT5G02080 AT5G02080 AT5G02080 AT5G02080 AT5G02080
fragaria_vesca	FvH4_5g38402 FvH4_5g38402 FvH4_5g38420 FvH4_5g38420 FvH4_7g08221 FvH4_7g08221
malus_domestica	MD08G1174000.v1.1 MD15G1360400.v1.1
prunus_persica	Prupe.1G507900_v2.0.a1 Prupe.1G507900_v2.0.a1 Prupe.1G507900_v2.0.a1 Prupe.1G507900_v2.0.a1
pyrus_communis	pycom08g14920 pycom15g32230
rosa_chinensis	RchiOBHm_Chr1g0340891 RchiOBHm_Chr1g0340911 RchiOBHm_Chr7g0240421
rosa_laevigata	RLG00000000678 RLG00000029049
rosa_multiflora	Rmu_sc0001211.1_g000112 Rmu_sc0002676.1_g000001
rosa_roxburghii	Rroxscaffold_3G00220100
rosa_rugosa	Rorug01G0160900.1 Rorug07G0335900
rosa_samantha	Rh1AG175900 Rh1BG143900 Rh1CG163800 Rh1DG175600 Rh7AG490200 Rh7BG463100 Rh7CG506600 Rh7DG474200
rosa_wichuraiana	Rw0G004950 Rw1G014660 Rw7G041000 Rw7G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	599
Acc65I	GGTACC	1 cut(s)	191
AccB1I	GGYRCC	1 cut(s)	191
AccB7I	CCANNNNNTGG	1 cut(s)	146
AciI	CCGC	2 cut(s)	383, 581
AclI	AACGTT	1 cut(s)	214
AclWI	GGATC	1 cut(s)	350
AcsI	RAATTY	1 cut(s)	24
AfaI	GTAC	3 cut(s)	193, 275, 405
AfiI	CCNNNNNNNGG	1 cut(s)	146
AgsI	TTSAA	3 cut(s)	283, 368, 401
AluBI	AGCT	3 cut(s)	112, 243, 263
AluI	AGCT	3 cut(s)	112, 243, 263
AlwI	GGATC	1 cut(s)	350
AlwNI	CAGNNNCTG	1 cut(s)	590
AoxI	GGCC	1 cut(s)	469
ApeKI	GCWGC	3 cut(s)	260, 455, 578
ApoI	RAATTY	1 cut(s)	24
AseI	ATTAAT	1 cut(s)	627
Asp718I	GGTACC	1 cut(s)	191
AspS9I	GGNCC	1 cut(s)	554
AvaII	GGWCC	1 cut(s)	554
BaeI	ACNNNNGTAYC	2 cut(s)	183, 216
BanI	GGYRCC	1 cut(s)	191
BbvI	GCAGC	3 cut(s)	272, 442, 590
BccI	CCATC	1 cut(s)	520
BceAI	ACGGC	1 cut(s)	484
BfaI	CTAG	1 cut(s)	374
BfmI	CTRYAG	1 cut(s)	456
BglII	AGATCT	1 cut(s)	341
BisI	GCNGC	4 cut(s)	261, 456, 579, 582
BlsI	GCNGC	4 cut(s)	262, 457, 580, 583
BmcAI	AGTACT	1 cut(s)	275
Bme18I	GGWCC	1 cut(s)	554
BmgT120I	GGNCC	1 cut(s)	554
BmiI	GGNNCC	2 cut(s)	75, 193
BmsI	GCATC	1 cut(s)	34
BpmI	CTGGAG	2 cut(s)	227, 497
Bpu10I	CCTNAGC	1 cut(s)	244
BpuEI	CTTGAG	2 cut(s)	134, 670
BsaJI	CCNNGG	1 cut(s)	605
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse1I	ACTGG	1 cut(s)	409
BseDI	CCNNGG	1 cut(s)	605
BseGI	GGATG	1 cut(s)	49
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMII	CTCAG	1 cut(s)	258
BseNI	ACTGG	1 cut(s)	409
BseRI	GAGGAG	4 cut(s)	66, 171, 270, 445
BseXI	GCAGC	3 cut(s)	272, 442, 590
BshFI	GGCC	1 cut(s)	471
BshNI	GGYRCC	1 cut(s)	191
BslFI	GGGAC	2 cut(s)	397, 587
BslI	CCNNNNNNNGG	1 cut(s)	146
BsmFI	GGGAC	2 cut(s)	397, 587
BsnI	GGCC	1 cut(s)	471
Bsp143I	GATC	2 cut(s)	341, 355
BspACI	CCGC	2 cut(s)	383, 581
BspANI	GGCC	1 cut(s)	471
BspCNI	CTCAG	1 cut(s)	257
BspLI	GGNNCC	2 cut(s)	75, 193
BspMAI	CTGCAG	1 cut(s)	460
BspPI	GGATC	1 cut(s)	350
BspT107I	GGYRCC	1 cut(s)	191
BsrI	ACTGG	1 cut(s)	409
BssECI	CCNNGG	1 cut(s)	605
BssMI	GATC	2 cut(s)	341, 355
BssT1I	CCWWGG	1 cut(s)	605
Bst4CI	ACNGT	2 cut(s)	199, 660
Bst6I	CTCTTC	1 cut(s)	351
BstC8I	GCNNGC	1 cut(s)	289
BstDEI	CTNAG	2 cut(s)	244, 444
BstF5I	GGATG	1 cut(s)	49
BstKTI	GATC	2 cut(s)	344, 358
BstMBI	GATC	2 cut(s)	341, 355
BstMWI	GCNNNNNNNGC	2 cut(s)	293, 461
BstSFI	CTRYAG	1 cut(s)	456
BstV1I	GCAGC	3 cut(s)	272, 442, 590
BstX2I	RGATCY	1 cut(s)	341
BstYI	RGATCY	1 cut(s)	341
BsuRI	GGCC	1 cut(s)	471
BtsCI	GGATG	1 cut(s)	49
BtsI	GCAGTG	1 cut(s)	432
BtsIMutI	CAGTG	2 cut(s)	109, 432
Cac8I	GCNNGC	1 cut(s)	289
CaiI	CAGNNNCTG	1 cut(s)	590
Cfr13I	GGNCC	1 cut(s)	554
Csp6I	GTAC	3 cut(s)	192, 274, 404
CviAII	CATG	3 cut(s)	452, 565, 616
CviJI	RGCY	9 cut(s)	5, 74, 112, 119, 243, 263, 287, 291, 471
CviKI_1	RGCY	9 cut(s)	5, 74, 112, 119, 243, 263, 287, 291, 471
CviQI	GTAC	3 cut(s)	192, 274, 404
DdeI	CTNAG	2 cut(s)	244, 444
DpnI	GATC	2 cut(s)	343, 357
DpnII	GATC	2 cut(s)	341, 355
DraI	TTTAAA	1 cut(s)	84
DrdI	GACNNNNNNGTC	1 cut(s)	599
DseDI	GACNNNNNNGTC	1 cut(s)	599
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
Eco130I	CCWWGG	1 cut(s)	605
Eco47I	GGWCC	1 cut(s)	554
EcoT14I	CCWWGG	1 cut(s)	605
ErhI	CCWWGG	1 cut(s)	605
FaeI	CATG	3 cut(s)	455, 568, 619
FaiI	YATR	7 cut(s)	294, 334, 453, 566, 617, 641, 647
FaqI	GGGAC	2 cut(s)	397, 587
FatI	CATG	3 cut(s)	451, 564, 615
Fnu4HI	GCNGC	4 cut(s)	261, 456, 579, 582
FokI	GGATG	1 cut(s)	56
Fsp4HI	GCNGC	4 cut(s)	261, 456, 579, 582
FspBI	CTAG	1 cut(s)	374
GluI	GCNGC	4 cut(s)	261, 456, 579, 582
GsuI	CTGGAG	2 cut(s)	227, 497
HaeIII	GGCC	1 cut(s)	471
Hin1II	CATG	3 cut(s)	455, 568, 619
HindIII	AAGCTT	1 cut(s)	110
HinfI	GANTC	3 cut(s)	68, 389, 448
Hpy166II	GTNNAC	2 cut(s)	406, 537
Hpy188I	TCNGA	3 cut(s)	315, 592, 669
Hpy188III	TCNNGA	6 cut(s)	147, 206, 350, 374, 514, 687
Hpy8I	GTNNAC	2 cut(s)	406, 537
HpyAV	CCTTC	1 cut(s)	277
HpyCH4III	ACNGT	2 cut(s)	199, 660
HpyCH4IV	ACGT	2 cut(s)	214, 600
HpyCH4V	TGCA	6 cut(s)	47, 339, 458, 523, 544, 578
HpyF10VI	GCNNNNNNNGC	2 cut(s)	293, 461
HpyF3I	CTNAG	2 cut(s)	244, 444
HpySE526I	ACGT	2 cut(s)	214, 600
Hsp92II	CATG	3 cut(s)	455, 568, 619
KpnI	GGTACC	1 cut(s)	195
Kzo9I	GATC	2 cut(s)	341, 355
LmnI	GCTCC	4 cut(s)	79, 158, 208, 257
LpnPI	CCDG	9 cut(s)	26, 132, 171, 191, 231, 273, 363, 422, 527
Lsp1109I	GCAGC	3 cut(s)	272, 442, 590
LweI	GCATC	1 cut(s)	34
MaeI	CTAG	1 cut(s)	374
MaeII	ACGT	2 cut(s)	214, 600
MaeIII	GTNAC	3 cut(s)	178, 248, 360
MalI	GATC	2 cut(s)	343, 357
MboI	GATC	2 cut(s)	341, 355
MboII	GAAGA	1 cut(s)	338
MflI	RGATCY	1 cut(s)	341
MluCI	AATT	4 cut(s)	24, 150, 235, 378
MlyI	GAGTC	3 cut(s)	62, 398, 442
MseI	TTAA	3 cut(s)	83, 126, 627
MslI	CAYNNNNRTG	1 cut(s)	620
MspA1I	CMGCKG	1 cut(s)	581
MwoI	GCNNNNNNNGC	2 cut(s)	293, 461
NdeII	GATC	2 cut(s)	341, 355
NlaIII	CATG	3 cut(s)	455, 568, 619
NlaIV	GGNNCC	2 cut(s)	75, 193
NmeAIII	GCCGAG	1 cut(s)	50
NmuCI	GTSAC	1 cut(s)	248
PflMI	CCANNNNNTGG	1 cut(s)	146
PkrI	GCNGC	4 cut(s)	262, 457, 580, 583
PleI	GAGTC	3 cut(s)	62, 397, 442
PpsI	GAGTC	3 cut(s)	62, 397, 442
PshBI	ATTAAT	1 cut(s)	627
Psp1406I	AACGTT	1 cut(s)	214
PspN4I	GGNNCC	2 cut(s)	75, 193
PspPI	GGNCC	1 cut(s)	554
PstI	CTGCAG	1 cut(s)	460
PstNI	CAGNNNCTG	1 cut(s)	590
PsuI	RGATCY	1 cut(s)	341
RsaI	GTAC	3 cut(s)	193, 275, 405
RsaNI	GTAC	3 cut(s)	192, 274, 404
RseI	CAYNNNNRTG	1 cut(s)	620
SaqAI	TTAA	3 cut(s)	83, 126, 627
SatI	GCNGC	4 cut(s)	261, 456, 579, 582
Sau3AI	GATC	2 cut(s)	341, 355
Sau96I	GGNCC	1 cut(s)	554
ScaI	AGTACT	1 cut(s)	275
SchI	GAGTC	3 cut(s)	62, 398, 442
SfaNI	GCATC	1 cut(s)	34
SfcI	CTRYAG	1 cut(s)	456
SinI	GGWCC	1 cut(s)	554
SmiMI	CAYNNNNRTG	1 cut(s)	620
SmlI	CTYRAG	2 cut(s)	113, 685
SmoI	CTYRAG	2 cut(s)	113, 685
Sse9I	AATT	4 cut(s)	24, 150, 235, 378
SsiI	CCGC	2 cut(s)	383, 581
SspI	AATATT	1 cut(s)	501
SspMI	CTAG	1 cut(s)	374
StyI	CCWWGG	1 cut(s)	605
TaaI	ACNGT	2 cut(s)	199, 660
TaiI	ACGT	2 cut(s)	217, 603
TasI	AATT	4 cut(s)	24, 150, 235, 378
TatI	WGTACW	2 cut(s)	273, 403
TauI	GCSGC	1 cut(s)	584
Tru1I	TTAA	3 cut(s)	83, 126, 627
Tru9I	TTAA	3 cut(s)	83, 126, 627
TscAI	CASTG	2 cut(s)	109, 432
TseFI	GTSAC	1 cut(s)	248
TseI	GCWGC	3 cut(s)	260, 455, 578
Tsp45I	GTSAC	1 cut(s)	248
TspGWI	ACGGA	1 cut(s)	348
TspRI	CASTG	2 cut(s)	109, 432
Van91I	CCANNNNNTGG	1 cut(s)	146
VpaK11BI	GGWCC	1 cut(s)	554
VspI	ATTAAT	1 cut(s)	627
XapI	RAATTY	1 cut(s)	24
XbaI	TCTAGA	1 cut(s)	373
XcmI	CCANNNNNNNNNTGG	1 cut(s)	202
XspI	CTAG	1 cut(s)	374
ZrmI	AGTACT	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.