Rh1DG175600

Phosphopantothenate-cysteine ligase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Reverse (-)
35976531 .. 35982868
6338 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG175600.1

Sequence Viewer

Length: 1167 bp
ATGGGGCATGGGCACATCTGCCCCAATGGCAGGTCCAAGATAACAAAATATAGACTTCTCTACATGGGATTATACGCTCTAATAACCTATAAATCTGATTTTCTAAACCCGTTGGGTTGGGACCGTGTTCACCGGTGCTGTGGTTGGCATCCTCTGCAACTCAAAAAGGCAAATTACAAAATGGCTCTAACAAATGGGTTGGAAATTCCTAAAGAAGTGCTGGATGCAGAAATCAAATCCTTTTTTGACTCAGCTCCTCCTTTAAAGAACAGAGATGATGTCAGTGAAAAACTTGAGGCATTTGTTAAAAAGAATTCGCAGCCTTCTGGAAATGGAGGAGCTAGGAGGGTGGTTTGTGTAACCTCTGGTGGTACCACGGTTCCTCTGGAGCAACGATGTGTTCGCTACATTGACAACTTCAGCTCAGGTTACAGAGGAGCAGCTTCCACAGAGTACTTTTTGAAGGCAGGCTGTGCTGTTATCTTTCTTTATCGGAGGGGAACTTGCCAACCATATTGCAGATCTCTTCCTGATGATCTGATGTCAGATTTTGGAAGGATGGTGGAGTGTTATGATCCGAAAGTACACCAATCCCATTCACAAGCAGTGAGGAGTGCTATCACTAAGAGTCATGCTGCAGTAGCAGACGGCCTCTTGCTGAAACTTCCCTTTACAACAATATTTGAGTATCTCCAGATGTTGCAGATGGTTGCGTTTACAATGCGAAGTATTGGACCACATGCCATGCTATATCTTGCAGCAGCAGTATCTGACTTTTACGTCCCTTGGAAGAGCATGGCAGAGCACAAAATTCAGTCAGGGTCTGGTCCATTGGATATGCGACTTGTTCAGGTGCCAAAGATGCTCTTAGTGCTGAGGAAAGACTGGGCTCCCCTGGCCTTCTGCATATCATTCAAGCTAGAAACAGATTCAAAGATCCTGTTAGAGAAGGCTGATATGGCTCGTAGGAAGTACAAGATGCATATGGTTGTAGCCAATGAGCTTTTGAGCCGAAAAGAAGAGGTTGTAGTTGTCACCAGCAATGAAAAGATTCTAGTTCGCCGAAACAAGTCTCTGGGTGTTGATGATGTGGAGAGCGCCCTTATTGAGCTTCTTGTGGAGAGGCATTCAGCTTATGTTGATCAGATCAAGACTGATTTTATATGA

Protein Analysis

388

Amino Acids

43.85

Weight (kDa)

9.18

Isoelectric Point (pI)

43.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DFP PF04127 235 - 357 2.9e-10 DNA/pantothenate metabolism flavoprotein C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 779
Acc36I ACCTGC 1 cut(s) 21
Acc65I GGTACC 1 cut(s) 371
AccB1I GGYRCC 2 cut(s) 371, 853
AclWI GGATC 2 cut(s) 569, 931
AcsI RAATTY 3 cut(s) 204, 313, 810
AcuI CTGAAG 1 cut(s) 403
AfaI GTAC 4 cut(s) 373, 455, 585, 974
AfiI CCNNNNNNNGG 1 cut(s) 30
AgeI ACCGGT 1 cut(s) 132
AgsI TTSAA 3 cut(s) 463, 916, 933
AjnI CCWGG 1 cut(s) 894
AluBI AGCT 8 cut(s) 254, 341, 423, 443, 919, 1003, 1111, 1133
AluI AGCT 8 cut(s) 254, 341, 423, 443, 919, 1003, 1111, 1133
Alw21I GWGCWC 1 cut(s) 807
Alw26I GTCTC 1 cut(s) 1077
AlwI GGATC 2 cut(s) 569, 931
AlwNI CAGNNNCTG 2 cut(s) 770, 824
AoxI GGCC 2 cut(s) 649, 897
ApeKI GCWGC 5 cut(s) 319, 440, 635, 758, 761
ApoI RAATTY 3 cut(s) 204, 313, 810
AsiGI ACCGGT 1 cut(s) 132
Asp700I GAANNNNTTC 1 cut(s) 1050
Asp718I GGTACC 1 cut(s) 371
AspLEI GCGC 1 cut(s) 1100
AspS9I GGNCC 4 cut(s) 33, 121, 734, 827
AsuHPI GGTGA 2 cut(s) 122, 1027
AvaII GGWCC 4 cut(s) 33, 121, 734, 827
BaeGI GKGCMC 1 cut(s) 15
BaeI ACNNNNGTAYC 2 cut(s) 363, 396
BanI GGYRCC 2 cut(s) 371, 853
BanII GRGCYC 1 cut(s) 892
Bbv12I GWGCWC 1 cut(s) 807
BbvCI CCTCAGC 1 cut(s) 875
BbvI GCAGC 5 cut(s) 331, 452, 622, 770, 773
BccI CCATC 2 cut(s) 553, 700
BceAI ACGGC 1 cut(s) 664
BciT130I CCWGG 1 cut(s) 896
BclI TGATCA 1 cut(s) 1141
BcoDI GTCTC 1 cut(s) 1077
BfaI CTAG 3 cut(s) 342, 920, 1055
BfmI CTRYAG 1 cut(s) 636
BfoI RGCGCY 1 cut(s) 1101
BfuAI ACCTGC 1 cut(s) 21
BglI GCCNNNNNGGC 1 cut(s) 27
BglII AGATCT 1 cut(s) 521
BisI GCNGC 5 cut(s) 320, 441, 636, 759, 762
BlsI GCNGC 5 cut(s) 321, 442, 637, 760, 763
BmcAI AGTACT 1 cut(s) 455
Bme1390I CCNGG 1 cut(s) 896
Bme18I GGWCC 4 cut(s) 33, 121, 734, 827
BmgT120I GGNCC 4 cut(s) 33, 121, 734, 827
BmiI GGNNCC 5 cut(s) 122, 373, 381, 855, 891
BmrFI CCNGG 1 cut(s) 896
BmrI ACTGGG 1 cut(s) 895
BmsI GCATC 4 cut(s) 157, 214, 852, 969
BmuI ACTGGG 1 cut(s) 895
BpmI CTGGAG 2 cut(s) 407, 677
Bpu10I CCTNAGC 2 cut(s) 424, 875
BpuEI CTTGAG 1 cut(s) 314
BsaJI CCNNGG 3 cut(s) 375, 785, 894
BsaWI WCCGGW 1 cut(s) 132
Bsc4I CCNNNNNNNGG 1 cut(s) 30
Bse118I RCCGGY 1 cut(s) 132
Bse1I ACTGG 1 cut(s) 890
Bse3DI GCAATG 1 cut(s) 1048
BseBI CCWGG 1 cut(s) 896
BseDI CCNNGG 3 cut(s) 375, 785, 894
BseGI GGATG 3 cut(s) 148, 229, 564
BseLI CCNNNNNNNGG 1 cut(s) 30
BseMI GCAATG 1 cut(s) 1048
BseMII CTCAG 3 cut(s) 264, 438, 866
BseNI ACTGG 1 cut(s) 890
BseRI GAGGAG 4 cut(s) 246, 351, 450, 625
BseSI GKGCMC 1 cut(s) 15
BseXI GCAGC 5 cut(s) 331, 452, 622, 770, 773
BshFI GGCC 2 cut(s) 651, 899
BshNI GGYRCC 2 cut(s) 371, 853
BshTI ACCGGT 1 cut(s) 132
BsiHKAI GWGCWC 1 cut(s) 807
BsiSI CCGG 1 cut(s) 133
BslFI GGGAC 2 cut(s) 134, 767
BslI CCNNNNNNNGG 1 cut(s) 30
BsmAI GTCTC 1 cut(s) 1077
BsmFI GGGAC 2 cut(s) 134, 767
BsmI GAATGC 1 cut(s) 1126
BsnI GGCC 2 cut(s) 651, 899
Bsp1286I GDGCHC 3 cut(s) 15, 807, 892
Bsp143I GATC 6 cut(s) 521, 535, 574, 936, 1141, 1146
BspANI GGCC 2 cut(s) 651, 899
BspCNI CTCAG 3 cut(s) 263, 437, 867
BspLI GGNNCC 5 cut(s) 122, 373, 381, 855, 891
BspMAI CTGCAG 1 cut(s) 640
BspMI ACCTGC 1 cut(s) 21
BspPI GGATC 2 cut(s) 569, 931
BspQI GCTCTTC 1 cut(s) 785
BspT107I GGYRCC 2 cut(s) 371, 853
BsrDI GCAATG 1 cut(s) 1048
BsrFI RCCGGY 1 cut(s) 132
BsrI ACTGG 1 cut(s) 890
BssAI RCCGGY 1 cut(s) 132
BssECI CCNNGG 3 cut(s) 375, 785, 894
BssMI GATC 6 cut(s) 521, 535, 574, 936, 1141, 1146
BssT1I CCWWGG 1 cut(s) 785
Bst2UI CCWGG 1 cut(s) 896
Bst4CI ACNGT 2 cut(s) 125, 379
Bst6I CTCTTC 3 cut(s) 531, 785, 1014
BstAPI GCANNNNNTGC 2 cut(s) 154, 473
BstC8I GCNNGC 1 cut(s) 469
BstDEI CTNAG 5 cut(s) 250, 424, 624, 868, 875
BstDSI CCRYGG 1 cut(s) 375
BstF5I GGATG 3 cut(s) 148, 229, 564
BstH2I RGCGCY 1 cut(s) 1101
BstHHI GCGC 1 cut(s) 1100
BstKTI GATC 6 cut(s) 524, 538, 577, 939, 1144, 1149
BstMAI GTCTC 1 cut(s) 1077
BstMBI GATC 6 cut(s) 521, 535, 574, 936, 1141, 1146
BstMWI GCNNNNNNNGC 8 cut(s) 27, 154, 473, 641, 862, 871, 896, 959
BstNI CCWGG 1 cut(s) 896
BstNSI RCATGY 1 cut(s) 743
BstSCI CCNGG 1 cut(s) 894
BstSFI CTRYAG 1 cut(s) 636
BstSLI GKGCMC 1 cut(s) 15
BstV1I GCAGC 5 cut(s) 331, 452, 622, 770, 773
BstX2I RGATCY 2 cut(s) 521, 936
BstYI RGATCY 2 cut(s) 521, 936
BsuRI GGCC 2 cut(s) 651, 899
BtgI CCRYGG 1 cut(s) 375
BtsCI GGATG 3 cut(s) 148, 229, 564
BtsI GCAGTG 1 cut(s) 612
BtsIMutI CAGTG 2 cut(s) 289, 612
BveI ACCTGC 1 cut(s) 21
Cac8I GCNNGC 1 cut(s) 469
CaiI CAGNNNCTG 2 cut(s) 770, 824
CfoI GCGC 1 cut(s) 1100
Cfr10I RCCGGY 1 cut(s) 132
Cfr13I GGNCC 4 cut(s) 33, 121, 734, 827
Csp6I GTAC 4 cut(s) 372, 454, 584, 973
CspAI ACCGGT 1 cut(s) 132
CviAII CATG 6 cut(s) 8, 64, 632, 740, 745, 796
CviQI GTAC 4 cut(s) 372, 454, 584, 973
DdeI CTNAG 5 cut(s) 250, 424, 624, 868, 875
DpnI GATC 6 cut(s) 523, 537, 576, 938, 1143, 1148
DpnII GATC 6 cut(s) 521, 535, 574, 936, 1141, 1146
DraI TTTAAA 1 cut(s) 264
DrdI GACNNNNNNGTC 1 cut(s) 779
DseDI GACNNNNNNGTC 1 cut(s) 779
Eam1104I CTCTTC 3 cut(s) 531, 785, 1014
EarI CTCTTC 3 cut(s) 531, 785, 1014
Eco130I CCWWGG 1 cut(s) 785
Eco24I GRGCYC 1 cut(s) 892
Eco47I GGWCC 4 cut(s) 33, 121, 734, 827
Eco57I CTGAAG 1 cut(s) 403
EcoRI GAATTC 1 cut(s) 313
EcoRII CCWGG 1 cut(s) 894
EcoT14I CCWWGG 1 cut(s) 785
EcoT22I ATGCAT 1 cut(s) 984
EcoT38I GRGCYC 1 cut(s) 892
ErhI CCWWGG 1 cut(s) 785
FaeI CATG 6 cut(s) 11, 67, 635, 743, 748, 799
FalI AAGNNNNNCTT 2 cut(s) 851, 883
FaqI GGGAC 2 cut(s) 134, 767
FatI CATG 6 cut(s) 7, 63, 631, 739, 744, 795
FauNDI CATATG 1 cut(s) 984
FbaI TGATCA 1 cut(s) 1141
Fnu4HI GCNGC 5 cut(s) 320, 441, 636, 759, 762
FokI GGATG 3 cut(s) 135, 236, 571
FriOI GRGCYC 1 cut(s) 892
Fsp4HI GCNGC 5 cut(s) 320, 441, 636, 759, 762
FspBI CTAG 3 cut(s) 342, 920, 1055
GlaI GCGC 1 cut(s) 1099
GluI GCNGC 5 cut(s) 320, 441, 636, 759, 762
GsuI CTGGAG 2 cut(s) 407, 677
HaeII RGCGCY 1 cut(s) 1101
HaeIII GGCC 2 cut(s) 651, 899
HapII CCGG 1 cut(s) 133
HhaI GCGC 1 cut(s) 1100
Hin1II CATG 6 cut(s) 11, 67, 635, 743, 748, 799
Hin6I GCGC 1 cut(s) 1098
HinP1I GCGC 1 cut(s) 1098
HinfI GANTC 4 cut(s) 248, 628, 929, 1051
HpaII CCGG 1 cut(s) 133
HphI GGTGA 2 cut(s) 122, 1027
Hpy166II GTNNAC 3 cut(s) 130, 586, 717
Hpy188I TCNGA 7 cut(s) 97, 495, 540, 547, 579, 772, 1146
Hpy188III TCNNGA 5 cut(s) 327, 386, 530, 694, 1150
Hpy8I GTNNAC 3 cut(s) 130, 586, 717
HpyAV CCTTC 5 cut(s) 333, 457, 549, 910, 943
HpyCH4III ACNGT 2 cut(s) 125, 379
HpyCH4IV ACGT 1 cut(s) 780
HpyCH4V TGCA 8 cut(s) 157, 227, 519, 638, 703, 758, 906, 982
HpyF10VI GCNNNNNNNGC 8 cut(s) 27, 154, 473, 641, 862, 871, 896, 959
HpyF3I CTNAG 5 cut(s) 250, 424, 624, 868, 875
HpySE526I ACGT 1 cut(s) 780
Hsp92II CATG 6 cut(s) 11, 67, 635, 743, 748, 799
HspAI GCGC 1 cut(s) 1098
KpnI GGTACC 1 cut(s) 375
Ksp22I TGATCA 1 cut(s) 1141
Kzo9I GATC 6 cut(s) 521, 535, 574, 936, 1141, 1146
LguI GCTCTTC 1 cut(s) 785
LmnI GCTCC 5 cut(s) 259, 338, 388, 437, 895
Lsp1109I GCAGC 5 cut(s) 331, 452, 622, 770, 773
LweI GCATC 4 cut(s) 157, 214, 852, 969
MaeI CTAG 3 cut(s) 342, 920, 1055
MaeII ACGT 1 cut(s) 780
MaeIII GTNAC 3 cut(s) 358, 428, 1033
MalI GATC 6 cut(s) 523, 537, 576, 938, 1143, 1148
MboI GATC 6 cut(s) 521, 535, 574, 936, 1141, 1146
MboII GAAGA 3 cut(s) 518, 802, 1031
MflI RGATCY 2 cut(s) 521, 936
MhlI GDGCHC 3 cut(s) 15, 807, 892
MluCI AATT 4 cut(s) 172, 204, 313, 810
MlyI GAGTC 2 cut(s) 242, 637
MmeI TCCRAC 1 cut(s) 180
Mph1103I ATGCAT 1 cut(s) 984
MroXI GAANNNNTTC 1 cut(s) 1050
MseI TTAA 2 cut(s) 263, 306
MspI CCGG 1 cut(s) 133
MspR9I CCNGG 1 cut(s) 896
Mva1269I GAATGC 1 cut(s) 1126
MvaI CCWGG 1 cut(s) 896
MwoI GCNNNNNNNGC 8 cut(s) 27, 154, 473, 641, 862, 871, 896, 959
NdeI CATATG 1 cut(s) 984
NdeII GATC 6 cut(s) 521, 535, 574, 936, 1141, 1146
NlaIII CATG 6 cut(s) 11, 67, 635, 743, 748, 799
NlaIV GGNNCC 5 cut(s) 122, 373, 381, 855, 891
NmuCI GTSAC 1 cut(s) 1033
NsiI ATGCAT 1 cut(s) 984
NspI RCATGY 1 cut(s) 743
PciSI GCTCTTC 1 cut(s) 785
PctI GAATGC 1 cut(s) 1126
PdmI GAANNNNTTC 1 cut(s) 1050
PfeI GAWTC 2 cut(s) 929, 1051
PinAI ACCGGT 1 cut(s) 132
PkrI GCNGC 5 cut(s) 321, 442, 637, 760, 763
PleI GAGTC 2 cut(s) 242, 636
PpsI GAGTC 2 cut(s) 242, 636
Psp6I CCWGG 1 cut(s) 894
PspGI CCWGG 1 cut(s) 894
PspN4I GGNNCC 5 cut(s) 122, 373, 381, 855, 891
PspPI GGNCC 4 cut(s) 33, 121, 734, 827
PstI CTGCAG 1 cut(s) 640
PstNI CAGNNNCTG 2 cut(s) 770, 824
PsuI RGATCY 2 cut(s) 521, 936
RsaI GTAC 4 cut(s) 373, 455, 585, 974
RsaNI GTAC 4 cut(s) 372, 454, 584, 973
SapI GCTCTTC 1 cut(s) 785
SaqAI TTAA 2 cut(s) 263, 306
SatI GCNGC 5 cut(s) 320, 441, 636, 759, 762
Sau3AI GATC 6 cut(s) 521, 535, 574, 936, 1141, 1146
Sau96I GGNCC 4 cut(s) 33, 121, 734, 827
ScaI AGTACT 1 cut(s) 455
SchI GAGTC 2 cut(s) 242, 637
ScrFI CCNGG 1 cut(s) 896
SduI GDGCHC 3 cut(s) 15, 807, 892
SfaNI GCATC 4 cut(s) 157, 214, 852, 969
SfcI CTRYAG 1 cut(s) 636
SgrAI CRCCGGYG 1 cut(s) 132
SinI GGWCC 4 cut(s) 33, 121, 734, 827
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
Sse9I AATT 4 cut(s) 172, 204, 313, 810
SspI AATATT 1 cut(s) 681
SspMI CTAG 3 cut(s) 342, 920, 1055
StyD4I CCNGG 1 cut(s) 894
StyI CCWWGG 1 cut(s) 785
TaaI ACNGT 2 cut(s) 125, 379
TaiI ACGT 1 cut(s) 783
TasI AATT 4 cut(s) 172, 204, 313, 810
TatI WGTACW 3 cut(s) 453, 583, 972
TfiI GAWTC 2 cut(s) 929, 1051
Tru1I TTAA 2 cut(s) 263, 306
Tru9I TTAA 2 cut(s) 263, 306
TscAI CASTG 2 cut(s) 289, 612
TseFI GTSAC 1 cut(s) 1033
TseI GCWGC 5 cut(s) 319, 440, 635, 758, 761
Tsp45I GTSAC 1 cut(s) 1033
TspDTI ATGAA 1 cut(s) 1059
TspRI CASTG 2 cut(s) 289, 612
VpaK11BI GGWCC 4 cut(s) 33, 121, 734, 827
XapI RAATTY 3 cut(s) 204, 313, 810
XceI RCATGY 1 cut(s) 743
XcmI CCANNNNNNNNNTGG 1 cut(s) 382
XmnI GAANNNNTTC 1 cut(s) 1050
XspI CTAG 3 cut(s) 342, 920, 1055
ZrmI AGTACT 1 cut(s) 455
Zsp2I ATGCAT 1 cut(s) 984
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.