Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001987

Physical Location & Seq

Genomic Coordinates Forward (+)

43407237 .. 43410631

Gene Structure 3395 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1360400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGCCATCTTTGGCAGGTTATGCTGTTATCTTTCTATATCGAAGGGGTACTTGCCAGCCATATTGCAGATCACTTCCCGCTGATCCTTTGCTTGAATGTTTTGAATATACGGATGACTCAAATATTAACGTGTGCCAGTCACATTCGGAAGCAGTGAGGAATGCCATCACTCGAAGTCATGCCGCAGTAGCAGGAGGCCTCTTGTTAAAACTTCCCTTCACAACCATATTTGAGTATCTTCAGATGTTGCAGATGATTGCTTTTTCAATAAGAAGTCTCGGGCCACATGCAATTCTTTACCTTGCAGCTGCACTGTCTGACTTTTATGTTCCTTGGAAAAGCATGGCAGAACACAAAATTCAGTCAGGATCTGGTCCGTTGGACATGCGACTTGTTCAGGTGCCAAAGATGCTATTAGTGCTGAGGAAAGACTGGGCACCAATGGCCTTCTGTATATCATTTAAGCTAGAGACGGATTCGAAGATTCTTTTGGAGAAGGCTGATATGGCTCTTAAGAAGTACAAGGTACATATGATTGTAGCAAATGAGCTTTCAACCCGCAAGGAAGAGGTTGTAGTTGTCAGACGCAATGAAAAGATATCAGTTCGCCGAAACCAGTCCCTGGGCGTTGATGATGTGGAGAAACCACTTATTGACCTTATCGTGGGAAGACATTCGGCTTATCTCGAGAATCCTGATTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004632 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009987 GO:0015936 GO:0015937 GO:0016874 GO:0016879 GO:0016881 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

DFP

Protein Analysis

235

Amino Acids

26.43

Weight (kDa)

8.54

Isoelectric Point (pI)

47.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DFP	PF04127	84 - 203	1.6e-10	DNA/pantothenate metabolism flavoprotein C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12350 AT1G12350 AT5G02080 AT5G02080 AT5G02080 AT5G02080 AT5G02080 AT5G02080 AT5G02080
fragaria_vesca	FvH4_5g38402 FvH4_5g38402 FvH4_5g38420 FvH4_5g38420 FvH4_7g08221 FvH4_7g08221
malus_domestica	MD08G1174000.v1.1 MD15G1360400.v1.1
prunus_persica	Prupe.1G507900_v2.0.a1 Prupe.1G507900_v2.0.a1 Prupe.1G507900_v2.0.a1 Prupe.1G507900_v2.0.a1
pyrus_communis	pycom08g14920 pycom15g32230
rosa_chinensis	RchiOBHm_Chr1g0340891 RchiOBHm_Chr1g0340911 RchiOBHm_Chr7g0240421
rosa_laevigata	RLG00000000678 RLG00000029049
rosa_multiflora	Rmu_sc0001211.1_g000112 Rmu_sc0002676.1_g000001
rosa_roxburghii	Rroxscaffold_3G00220100
rosa_rugosa	Rorug01G0160900.1 Rorug07G0335900
rosa_samantha	Rh1AG175900 Rh1BG143900 Rh1CG163800 Rh1DG175600 Rh7AG490200 Rh7BG463100 Rh7CG506600 Rh7DG474200
rosa_wichuraiana	Rw0G004950 Rw1G014660 Rw7G041000 Rw7G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	5
AccB1I	GGYRCC	2 cut(s)	400, 436
AccB7I	CCANNNNNTGG	1 cut(s)	622
AciI	CCGC	3 cut(s)	78, 183, 559
AclWI	GGATC	2 cut(s)	77, 376
AcsI	RAATTY	1 cut(s)	357
AcuI	CTGAAG	1 cut(s)	224
AfaI	GTAC	3 cut(s)	49, 521, 528
AfiI	CCNNNNNNNGG	2 cut(s)	622, 664
AflII	CTTAAG	1 cut(s)	512
AflIII	ACRYGT	1 cut(s)	129
AgsI	TTSAA	4 cut(s)	95, 104, 267, 555
AjnI	CCWGG	1 cut(s)	621
AjuI	GAANNNNNNNTTGG	2 cut(s)	473, 505
AluBI	AGCT	3 cut(s)	308, 466, 550
AluI	AGCT	3 cut(s)	308, 466, 550
Alw26I	GTCTC	2 cut(s)	281, 464
AlwI	GGATC	2 cut(s)	77, 376
AlwNI	CAGNNNCTG	2 cut(s)	371, 622
Ama87I	CYCGRG	2 cut(s)	278, 686
AoxI	GGCC	3 cut(s)	196, 281, 444
ApeKI	GCWGC	2 cut(s)	305, 308
ApoI	RAATTY	1 cut(s)	357
Asp700I	GAANNNNTTC	1 cut(s)	673
AspS9I	GGNCC	2 cut(s)	281, 374
AsuII	TTCGAA	1 cut(s)	479
AvaI	CYCGRG	2 cut(s)	278, 686
AvaII	GGWCC	1 cut(s)	374
BaeGI	GKGCMC	1 cut(s)	439
BanI	GGYRCC	2 cut(s)	400, 436
BbsI	GAAGAC	1 cut(s)	676
BbvCI	CCTCAGC	1 cut(s)	422
BbvI	GCAGC	2 cut(s)	295, 317
BccI	CCATC	2 cut(s)	13, 173
BciT130I	CCWGG	1 cut(s)	623
BcoDI	GTCTC	2 cut(s)	281, 464
BfaI	CTAG	1 cut(s)	467
BfrI	CTTAAG	1 cut(s)	512
BfuAI	ACCTGC	1 cut(s)	5
BisI	GCNGC	3 cut(s)	183, 306, 309
BlsI	GCNGC	3 cut(s)	184, 307, 310
Bme1390I	CCNGG	1 cut(s)	623
Bme18I	GGWCC	1 cut(s)	374
BmeT110I	CYCGRG	2 cut(s)	278, 686
BmgT120I	GGNCC	2 cut(s)	281, 374
BmiI	GGNNCC	2 cut(s)	402, 438
BmrFI	CCNGG	1 cut(s)	623
BmrI	ACTGGG	1 cut(s)	442
BmsI	GCATC	1 cut(s)	399
BmuI	ACTGGG	1 cut(s)	442
BpiI	GAAGAC	1 cut(s)	676
Bpu10I	CCTNAGC	1 cut(s)	422
Bpu14I	TTCGAA	1 cut(s)	479
BsaJI	CCNNGG	3 cut(s)	332, 621, 622
Bsc4I	CCNNNNNNNGG	2 cut(s)	622, 664
Bse1I	ACTGG	3 cut(s)	136, 437, 616
Bse3DI	GCAATG	1 cut(s)	595
BseBI	CCWGG	1 cut(s)	623
BseDI	CCNNGG	3 cut(s)	332, 621, 622
BseGI	GGATG	1 cut(s)	118
BseLI	CCNNNNNNNGG	2 cut(s)	622, 664
BseMI	GCAATG	1 cut(s)	595
BseMII	CTCAG	1 cut(s)	413
BseNI	ACTGG	3 cut(s)	136, 437, 616
BseSI	GKGCMC	1 cut(s)	439
BseXI	GCAGC	2 cut(s)	295, 317
BsgI	GTGCAG	1 cut(s)	294
BshFI	GGCC	3 cut(s)	198, 283, 446
BshNI	GGYRCC	2 cut(s)	400, 436
BsiHKCI	CYCGRG	2 cut(s)	278, 686
BslFI	GGGAC	1 cut(s)	604
BslI	CCNNNNNNNGG	2 cut(s)	622, 664
BsmAI	GTCTC	2 cut(s)	281, 464
BsmBI	CGTCTC	1 cut(s)	464
BsmFI	GGGAC	1 cut(s)	604
BsmI	GAATGC	1 cut(s)	166
BsnI	GGCC	3 cut(s)	198, 283, 446
BsoBI	CYCGRG	2 cut(s)	278, 686
Bsp119I	TTCGAA	1 cut(s)	479
Bsp1286I	GDGCHC	1 cut(s)	439
Bsp143I	GATC	3 cut(s)	68, 82, 368
BspACI	CCGC	3 cut(s)	78, 183, 559
BspANI	GGCC	3 cut(s)	198, 283, 446
BspCNI	CTCAG	1 cut(s)	414
BspLI	GGNNCC	2 cut(s)	402, 438
BspMI	ACCTGC	1 cut(s)	5
BspPI	GGATC	2 cut(s)	77, 376
BspT104I	TTCGAA	1 cut(s)	479
BspT107I	GGYRCC	2 cut(s)	400, 436
BspTI	CTTAAG	1 cut(s)	512
BsrDI	GCAATG	1 cut(s)	595
BsrI	ACTGG	3 cut(s)	136, 437, 616
BssECI	CCNNGG	3 cut(s)	332, 621, 622
BssMI	GATC	3 cut(s)	68, 82, 368
BssT1I	CCWWGG	1 cut(s)	332
Bst2UI	CCWGG	1 cut(s)	623
Bst4CI	ACNGT	1 cut(s)	315
Bst6I	CTCTTC	1 cut(s)	561
BstAFI	CTTAAG	1 cut(s)	512
BstAPI	GCANNNNNTGC	1 cut(s)	20
BstBI	TTCGAA	1 cut(s)	479
BstC8I	GCNNGC	1 cut(s)	56
BstDEI	CTNAG	1 cut(s)	422
BstF5I	GGATG	1 cut(s)	118
BstKTI	GATC	3 cut(s)	71, 85, 371
BstMAI	GTCTC	2 cut(s)	281, 464
BstMBI	GATC	3 cut(s)	68, 82, 368
BstMWI	GCNNNNNNNGC	6 cut(s)	20, 188, 409, 418, 443, 506
BstNI	CCWGG	1 cut(s)	623
BstNSI	RCATGY	2 cut(s)	290, 388
BstSCI	CCNGG	1 cut(s)	621
BstSLI	GKGCMC	1 cut(s)	439
BstV1I	GCAGC	2 cut(s)	295, 317
BstV2I	GAAGAC	1 cut(s)	676
BstX2I	RGATCY	1 cut(s)	368
BstYI	RGATCY	1 cut(s)	368
BsuRI	GGCC	3 cut(s)	198, 283, 446
BtsCI	GGATG	1 cut(s)	118
BtsI	GCAGTG	1 cut(s)	159
BtsIMutI	CAGTG	2 cut(s)	159, 311
BveI	ACCTGC	1 cut(s)	5
Cac8I	GCNNGC	1 cut(s)	56
CaiI	CAGNNNCTG	2 cut(s)	371, 622
Cfr13I	GGNCC	2 cut(s)	281, 374
CseI	GACGC	1 cut(s)	594
Csp6I	GTAC	3 cut(s)	48, 520, 527
CviAII	CATG	4 cut(s)	179, 287, 343, 385
CviQI	GTAC	3 cut(s)	48, 520, 527
DdeI	CTNAG	1 cut(s)	422
DpnI	GATC	3 cut(s)	70, 84, 370
DpnII	GATC	3 cut(s)	68, 82, 368
Eam1104I	CTCTTC	1 cut(s)	561
EarI	CTCTTC	1 cut(s)	561
Eco130I	CCWWGG	1 cut(s)	332
Eco147I	AGGCCT	1 cut(s)	198
Eco32I	GATATC	1 cut(s)	600
Eco47I	GGWCC	1 cut(s)	374
Eco57I	CTGAAG	1 cut(s)	224
Eco88I	CYCGRG	2 cut(s)	278, 686
EcoRII	CCWGG	1 cut(s)	621
EcoRV	GATATC	1 cut(s)	600
EcoT14I	CCWWGG	1 cut(s)	332
ErhI	CCWWGG	1 cut(s)	332
Esp3I	CGTCTC	1 cut(s)	464
FaeI	CATG	4 cut(s)	182, 290, 346, 388
FalI	AAGNNNNNCTT	2 cut(s)	34, 66
FaqI	GGGAC	1 cut(s)	604
FatI	CATG	4 cut(s)	178, 286, 342, 384
FauI	CCCGC	2 cut(s)	85, 566
FauNDI	CATATG	1 cut(s)	531
Fnu4HI	GCNGC	3 cut(s)	183, 306, 309
FokI	GGATG	1 cut(s)	125
Fsp4HI	GCNGC	3 cut(s)	183, 306, 309
FspBI	CTAG	1 cut(s)	467
GluI	GCNGC	3 cut(s)	183, 306, 309
HaeIII	GGCC	3 cut(s)	198, 283, 446
HgaI	GACGC	1 cut(s)	594
Hin1II	CATG	4 cut(s)	182, 290, 346, 388
HinfI	GANTC	4 cut(s)	116, 476, 484, 691
Hpy188I	TCNGA	4 cut(s)	148, 243, 319, 584
Hpy188III	TCNNGA	4 cut(s)	366, 686, 688, 695
HpyAV	CCTTC	4 cut(s)	36, 226, 457, 490
HpyCH4III	ACNGT	1 cut(s)	315
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	5 cut(s)	66, 250, 290, 305, 311
HpyF10VI	GCNNNNNNNGC	6 cut(s)	20, 188, 409, 418, 443, 506
HpyF3I	CTNAG	1 cut(s)	422
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	4 cut(s)	182, 290, 346, 388
Kzo9I	GATC	3 cut(s)	68, 82, 368
Lsp1109I	GCAGC	2 cut(s)	295, 317
LweI	GCATC	1 cut(s)	399
MaeI	CTAG	1 cut(s)	467
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	1 cut(s)	138
MalI	GATC	3 cut(s)	70, 84, 370
MboI	GATC	3 cut(s)	68, 82, 368
MboII	GAAGA	4 cut(s)	230, 493, 578, 681
MflI	RGATCY	1 cut(s)	368
MhlI	GDGCHC	1 cut(s)	439
MluCI	AATT	2 cut(s)	291, 357
MlyI	GAGTC	1 cut(s)	110
MmeI	TCCRAC	1 cut(s)	360
MnlI	CCTC	5 cut(s)	150, 188, 209, 417, 562
MroXI	GAANNNNTTC	1 cut(s)	673
MseI	TTAA	4 cut(s)	126, 206, 462, 513
MspA1I	CMGCKG	2 cut(s)	80, 308
MspCI	CTTAAG	1 cut(s)	512
MspR9I	CCNGG	1 cut(s)	623
Mva1269I	GAATGC	1 cut(s)	166
MvaI	CCWGG	1 cut(s)	623
MwoI	GCNNNNNNNGC	6 cut(s)	20, 188, 409, 418, 443, 506
NdeI	CATATG	1 cut(s)	531
NdeII	GATC	3 cut(s)	68, 82, 368
NlaIII	CATG	4 cut(s)	182, 290, 346, 388
NlaIV	GGNNCC	2 cut(s)	402, 438
NmuCI	GTSAC	1 cut(s)	138
NspI	RCATGY	2 cut(s)	290, 388
NspV	TTCGAA	1 cut(s)	479
PaeR7I	CTCGAG	1 cut(s)	686
PasI	CCCWGGG	1 cut(s)	622
PceI	AGGCCT	1 cut(s)	198
PctI	GAATGC	1 cut(s)	166
PdmI	GAANNNNTTC	1 cut(s)	673
PfeI	GAWTC	3 cut(s)	476, 484, 691
PflMI	CCANNNNNTGG	1 cut(s)	622
PkrI	GCNGC	3 cut(s)	184, 307, 310
PleI	GAGTC	1 cut(s)	110
PpsI	GAGTC	1 cut(s)	110
Psp6I	CCWGG	1 cut(s)	621
PspGI	CCWGG	1 cut(s)	621
PspN4I	GGNNCC	2 cut(s)	402, 438
PspPI	GGNCC	2 cut(s)	281, 374
PstNI	CAGNNNCTG	2 cut(s)	371, 622
PsuI	RGATCY	1 cut(s)	368
PvuII	CAGCTG	1 cut(s)	308
RsaI	GTAC	3 cut(s)	49, 521, 528
RsaNI	GTAC	3 cut(s)	48, 520, 527
SaqAI	TTAA	4 cut(s)	126, 206, 462, 513
SatI	GCNGC	3 cut(s)	183, 306, 309
Sau3AI	GATC	3 cut(s)	68, 82, 368
Sau96I	GGNCC	2 cut(s)	281, 374
SchI	GAGTC	1 cut(s)	110
ScrFI	CCNGG	1 cut(s)	623
SduI	GDGCHC	1 cut(s)	439
SfaNI	GCATC	1 cut(s)	399
Sfr274I	CTCGAG	1 cut(s)	686
SfuI	TTCGAA	1 cut(s)	479
SinI	GGWCC	1 cut(s)	374
SlaI	CTCGAG	1 cut(s)	686
SmlI	CTYRAG	2 cut(s)	512, 686
SmoI	CTYRAG	2 cut(s)	512, 686
Sse9I	AATT	2 cut(s)	291, 357
SseBI	AGGCCT	1 cut(s)	198
SsiI	CCGC	3 cut(s)	78, 183, 559
SspI	AATATT	1 cut(s)	124
SspMI	CTAG	1 cut(s)	467
StuI	AGGCCT	1 cut(s)	198
StyD4I	CCNGG	1 cut(s)	621
StyI	CCWWGG	1 cut(s)	332
TaaI	ACNGT	1 cut(s)	315
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	4 cut(s)	40, 172, 479, 687
TasI	AATT	2 cut(s)	291, 357
TatI	WGTACW	1 cut(s)	519
TauI	GCSGC	1 cut(s)	185
TfiI	GAWTC	3 cut(s)	476, 484, 691
Tru1I	TTAA	4 cut(s)	126, 206, 462, 513
Tru9I	TTAA	4 cut(s)	126, 206, 462, 513
TscAI	CASTG	2 cut(s)	159, 318
TseFI	GTSAC	1 cut(s)	138
TseI	GCWGC	2 cut(s)	305, 308
Tsp45I	GTSAC	1 cut(s)	138
TspDTI	ATGAA	1 cut(s)	606
TspGWI	ACGGA	3 cut(s)	125, 366, 488
TspRI	CASTG	2 cut(s)	159, 318
Van91I	CCANNNNNTGG	1 cut(s)	622
Vha464I	CTTAAG	1 cut(s)	512
VpaK11BI	GGWCC	1 cut(s)	374
XapI	RAATTY	1 cut(s)	357
XceI	RCATGY	2 cut(s)	290, 388
XhoI	CTCGAG	1 cut(s)	686
XmnI	GAANNNNTTC	1 cut(s)	673
XspI	CTAG	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.