Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001987

Physical Location & Seq

Genomic Coordinates Forward (+)

31985336 .. 31988470

Gene Structure 3135 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029049

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGCTCTAACAAATGGGTTGGAAATTCCTAAAGAAATGCTGGATGCAGAAATCAAATCCTTTTTTGACTCAGCTCCTCCTTTAAAGAACAGAGATGATGTCAGTGAAAAACTTGAGGCATTTGTTAAAAAGAATTCGCATCCTTCTGGAAATGGAGGAGCTAGGAGGGTGGTTTGTGTAACCTCTGGTGGTACCACGGTTCCTCTGGAGCAACGATGTGTTCGCTACATTGACAACTTCAGCTCAGGTTACAGAGGAGCAGCTTCCACAGAGTACTTTTTGGAGGCAGGCTGTGCTGTTATCTTTCTTTATCGGAGGGGAACTTGCCAACCATATTGCAGATCTCTTCCCGATGATCCGTTACTTGAATGTCTGGAAATTGTGGACGAGTCAAACATTCAAGTACACCAGTCCCATTCACAAGCAGTGAGGAGTGCTATCACTAAGAGTCATGCTGCAGTAGCAGACGGCCTCTTGCTGAAACTTCCCTTTACAACAATATTTGAGTATCTCCAGATGTTGCAGATGGTTGCGTTTACAATGCGAAGTATTGGGCCACATGCCATGCTATATCTTGCAGCAGCAGTATCTGACTTTTATGTCCCTTGGAAGAGCATGGCAGAGCACAAAATTCAGTCAGGGTCTGGTCCATTGGATATGCGACTTGTTCAGGTGCCAAAGATGCTCTTAGTGCTGAGGAAAGACTGGGCTCCCATGGCCTTCTGCATATCATTCAAGCTAGAAACAGATTCAAAGATCCTGTTAGAGAAGGCTGATATGGCTCTTAGGAAGTACAAGATGCATATGGTTGTAGCCAATGAGCTTTTGAGCCGAAAAGAAGAGGTTGTAGTTGTCACCAGCAATGAAAAGATTCTAGTTCGCCGAAACAAGTCTCTGGGTGTTGATGATGTGGAGAGCGCCCTTATTGAGCTTCTTGTGGAGAGGCATTCAGCTTATGTTGATCAGATCAAGACTGATTTTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004632 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009987 GO:0015936 GO:0015937 GO:0016874 GO:0016879 GO:0016881 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

DFP

Protein Analysis

329

Amino Acids

36.74

Weight (kDa)

6.72

Isoelectric Point (pI)

41.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DFP	PF04127	175 - 297	6.2e-11	DNA/pantothenate metabolism flavoprotein C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12350 AT1G12350 AT5G02080 AT5G02080 AT5G02080 AT5G02080 AT5G02080 AT5G02080 AT5G02080
fragaria_vesca	FvH4_5g38402 FvH4_5g38402 FvH4_5g38420 FvH4_5g38420 FvH4_7g08221 FvH4_7g08221
malus_domestica	MD08G1174000.v1.1 MD15G1360400.v1.1
prunus_persica	Prupe.1G507900_v2.0.a1 Prupe.1G507900_v2.0.a1 Prupe.1G507900_v2.0.a1 Prupe.1G507900_v2.0.a1
pyrus_communis	pycom08g14920 pycom15g32230
rosa_chinensis	RchiOBHm_Chr1g0340891 RchiOBHm_Chr1g0340911 RchiOBHm_Chr7g0240421
rosa_laevigata	RLG00000000678 RLG00000029049
rosa_multiflora	Rmu_sc0001211.1_g000112 Rmu_sc0002676.1_g000001
rosa_roxburghii	Rroxscaffold_3G00220100
rosa_rugosa	Rorug01G0160900.1 Rorug07G0335900
rosa_samantha	Rh1AG175900 Rh1BG143900 Rh1CG163800 Rh1DG175600 Rh7AG490200 Rh7BG463100 Rh7CG506600 Rh7DG474200
rosa_wichuraiana	Rw0G004950 Rw1G014660 Rw7G041000 Rw7G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	599
Acc65I	GGTACC	1 cut(s)	191
AccB1I	GGYRCC	2 cut(s)	191, 673
AclWI	GGATC	2 cut(s)	350, 751
AcsI	RAATTY	3 cut(s)	24, 133, 630
AcuI	CTGAAG	1 cut(s)	223
AfaI	GTAC	4 cut(s)	193, 275, 405, 794
AgsI	TTSAA	4 cut(s)	368, 401, 736, 753
AluBI	AGCT	8 cut(s)	74, 161, 243, 263, 739, 823, 931, 953
AluI	AGCT	8 cut(s)	74, 161, 243, 263, 739, 823, 931, 953
Alw21I	GWGCWC	1 cut(s)	627
Alw26I	GTCTC	1 cut(s)	897
AlwI	GGATC	2 cut(s)	350, 751
AlwNI	CAGNNNCTG	2 cut(s)	590, 644
AoxI	GGCC	3 cut(s)	469, 554, 717
ApeKI	GCWGC	4 cut(s)	260, 455, 578, 581
ApoI	RAATTY	3 cut(s)	24, 133, 630
Asp700I	GAANNNNTTC	1 cut(s)	870
Asp718I	GGTACC	1 cut(s)	191
AspLEI	GCGC	1 cut(s)	920
AspS9I	GGNCC	2 cut(s)	554, 647
AsuHPI	GGTGA	1 cut(s)	847
AvaII	GGWCC	1 cut(s)	647
BaeI	ACNNNNGTAYC	2 cut(s)	183, 216
BanI	GGYRCC	2 cut(s)	191, 673
BanII	GRGCYC	1 cut(s)	712
Bbv12I	GWGCWC	1 cut(s)	627
BbvCI	CCTCAGC	1 cut(s)	695
BbvI	GCAGC	4 cut(s)	272, 442, 590, 593
BccI	CCATC	1 cut(s)	520
BceAI	ACGGC	1 cut(s)	484
BclI	TGATCA	1 cut(s)	961
BcoDI	GTCTC	1 cut(s)	897
BfaI	CTAG	3 cut(s)	162, 740, 875
BfmI	CTRYAG	1 cut(s)	456
BfoI	RGCGCY	1 cut(s)	921
BglII	AGATCT	1 cut(s)	341
BisI	GCNGC	4 cut(s)	261, 456, 579, 582
BlsI	GCNGC	4 cut(s)	262, 457, 580, 583
BmcAI	AGTACT	1 cut(s)	275
Bme18I	GGWCC	1 cut(s)	647
BmgT120I	GGNCC	2 cut(s)	554, 647
BmiI	GGNNCC	4 cut(s)	193, 201, 675, 711
BmrI	ACTGGG	1 cut(s)	715
BmsI	GCATC	4 cut(s)	34, 148, 672, 789
BmuI	ACTGGG	1 cut(s)	715
BpmI	CTGGAG	2 cut(s)	227, 497
Bpu10I	CCTNAGC	2 cut(s)	244, 695
BpuEI	CTTGAG	1 cut(s)	134
BsaJI	CCNNGG	3 cut(s)	195, 605, 714
Bse1I	ACTGG	2 cut(s)	409, 710
Bse3DI	GCAATG	1 cut(s)	868
BseDI	CCNNGG	3 cut(s)	195, 605, 714
BseGI	GGATG	2 cut(s)	49, 139
BseMI	GCAATG	1 cut(s)	868
BseMII	CTCAG	3 cut(s)	84, 258, 686
BseNI	ACTGG	2 cut(s)	409, 710
BseRI	GAGGAG	4 cut(s)	66, 171, 270, 445
BseXI	GCAGC	4 cut(s)	272, 442, 590, 593
BshFI	GGCC	3 cut(s)	471, 556, 719
BshNI	GGYRCC	2 cut(s)	191, 673
BsiHKAI	GWGCWC	1 cut(s)	627
BslFI	GGGAC	2 cut(s)	397, 587
BsmAI	GTCTC	1 cut(s)	897
BsmFI	GGGAC	2 cut(s)	397, 587
BsmI	GAATGC	1 cut(s)	946
BsnI	GGCC	3 cut(s)	471, 556, 719
Bsp1286I	GDGCHC	2 cut(s)	627, 712
Bsp143I	GATC	5 cut(s)	341, 355, 756, 961, 966
Bsp19I	CCATGG	1 cut(s)	714
BspANI	GGCC	3 cut(s)	471, 556, 719
BspCNI	CTCAG	3 cut(s)	83, 257, 687
BspLI	GGNNCC	4 cut(s)	193, 201, 675, 711
BspMAI	CTGCAG	1 cut(s)	460
BspPI	GGATC	2 cut(s)	350, 751
BspQI	GCTCTTC	1 cut(s)	605
BspT107I	GGYRCC	2 cut(s)	191, 673
BsrDI	GCAATG	1 cut(s)	868
BsrI	ACTGG	2 cut(s)	409, 710
BssECI	CCNNGG	3 cut(s)	195, 605, 714
BssMI	GATC	5 cut(s)	341, 355, 756, 961, 966
BssT1I	CCWWGG	2 cut(s)	605, 714
Bst4CI	ACNGT	1 cut(s)	199
Bst6I	CTCTTC	3 cut(s)	351, 605, 834
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstC8I	GCNNGC	1 cut(s)	289
BstDEI	CTNAG	6 cut(s)	70, 244, 444, 688, 695, 785
BstDSI	CCRYGG	2 cut(s)	195, 714
BstF5I	GGATG	2 cut(s)	49, 139
BstH2I	RGCGCY	1 cut(s)	921
BstHHI	GCGC	1 cut(s)	920
BstKTI	GATC	5 cut(s)	344, 358, 759, 964, 969
BstMAI	GTCTC	1 cut(s)	897
BstMBI	GATC	5 cut(s)	341, 355, 756, 961, 966
BstMWI	GCNNNNNNNGC	6 cut(s)	293, 461, 682, 691, 716, 779
BstNSI	RCATGY	1 cut(s)	563
BstSFI	CTRYAG	1 cut(s)	456
BstV1I	GCAGC	4 cut(s)	272, 442, 590, 593
BstX2I	RGATCY	2 cut(s)	341, 756
BstYI	RGATCY	2 cut(s)	341, 756
BsuRI	GGCC	3 cut(s)	471, 556, 719
BtgI	CCRYGG	2 cut(s)	195, 714
BtsCI	GGATG	2 cut(s)	49, 139
BtsI	GCAGTG	1 cut(s)	432
BtsIMutI	CAGTG	2 cut(s)	109, 432
Cac8I	GCNNGC	1 cut(s)	289
CaiI	CAGNNNCTG	2 cut(s)	590, 644
CfoI	GCGC	1 cut(s)	920
Cfr13I	GGNCC	2 cut(s)	554, 647
Csp6I	GTAC	4 cut(s)	192, 274, 404, 793
CviAII	CATG	5 cut(s)	452, 560, 565, 616, 715
CviQI	GTAC	4 cut(s)	192, 274, 404, 793
DdeI	CTNAG	6 cut(s)	70, 244, 444, 688, 695, 785
DpnI	GATC	5 cut(s)	343, 357, 758, 963, 968
DpnII	GATC	5 cut(s)	341, 355, 756, 961, 966
DraI	TTTAAA	1 cut(s)	84
DrdI	GACNNNNNNGTC	1 cut(s)	599
DseDI	GACNNNNNNGTC	1 cut(s)	599
Eam1104I	CTCTTC	3 cut(s)	351, 605, 834
EarI	CTCTTC	3 cut(s)	351, 605, 834
Eco130I	CCWWGG	2 cut(s)	605, 714
Eco24I	GRGCYC	1 cut(s)	712
Eco47I	GGWCC	1 cut(s)	647
Eco57I	CTGAAG	1 cut(s)	223
EcoRI	GAATTC	1 cut(s)	133
EcoT14I	CCWWGG	2 cut(s)	605, 714
EcoT22I	ATGCAT	1 cut(s)	804
EcoT38I	GRGCYC	1 cut(s)	712
ErhI	CCWWGG	2 cut(s)	605, 714
FaeI	CATG	5 cut(s)	455, 563, 568, 619, 718
FalI	AAGNNNNNCTT	2 cut(s)	671, 703
FaqI	GGGAC	2 cut(s)	397, 587
FatI	CATG	5 cut(s)	451, 559, 564, 615, 714
FauNDI	CATATG	1 cut(s)	804
FbaI	TGATCA	1 cut(s)	961
Fnu4HI	GCNGC	4 cut(s)	261, 456, 579, 582
FokI	GGATG	2 cut(s)	56, 126
FriOI	GRGCYC	1 cut(s)	712
Fsp4HI	GCNGC	4 cut(s)	261, 456, 579, 582
FspBI	CTAG	3 cut(s)	162, 740, 875
GlaI	GCGC	1 cut(s)	919
GluI	GCNGC	4 cut(s)	261, 456, 579, 582
GsuI	CTGGAG	2 cut(s)	227, 497
HaeII	RGCGCY	1 cut(s)	921
HaeIII	GGCC	3 cut(s)	471, 556, 719
HhaI	GCGC	1 cut(s)	920
Hin1II	CATG	5 cut(s)	455, 563, 568, 619, 718
Hin6I	GCGC	1 cut(s)	918
HinP1I	GCGC	1 cut(s)	918
HinfI	GANTC	5 cut(s)	68, 389, 448, 749, 871
HphI	GGTGA	1 cut(s)	847
Hpy166II	GTNNAC	3 cut(s)	385, 406, 537
Hpy188I	TCNGA	3 cut(s)	315, 592, 966
Hpy188III	TCNNGA	6 cut(s)	147, 206, 350, 374, 514, 970
Hpy8I	GTNNAC	3 cut(s)	385, 406, 537
HpyAV	CCTTC	3 cut(s)	153, 730, 763
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4V	TGCA	7 cut(s)	47, 339, 458, 523, 578, 726, 802
HpyF10VI	GCNNNNNNNGC	6 cut(s)	293, 461, 682, 691, 716, 779
HpyF3I	CTNAG	6 cut(s)	70, 244, 444, 688, 695, 785
Hsp92II	CATG	5 cut(s)	455, 563, 568, 619, 718
HspAI	GCGC	1 cut(s)	918
KpnI	GGTACC	1 cut(s)	195
Ksp22I	TGATCA	1 cut(s)	961
Kzo9I	GATC	5 cut(s)	341, 355, 756, 961, 966
LguI	GCTCTTC	1 cut(s)	605
LmnI	GCTCC	5 cut(s)	79, 158, 208, 257, 715
Lsp1109I	GCAGC	4 cut(s)	272, 442, 590, 593
LweI	GCATC	4 cut(s)	34, 148, 672, 789
MaeI	CTAG	3 cut(s)	162, 740, 875
MaeIII	GTNAC	4 cut(s)	178, 248, 360, 853
MalI	GATC	5 cut(s)	343, 357, 758, 963, 968
MboI	GATC	5 cut(s)	341, 355, 756, 961, 966
MboII	GAAGA	3 cut(s)	338, 622, 851
MflI	RGATCY	2 cut(s)	341, 756
MhlI	GDGCHC	2 cut(s)	627, 712
MluCI	AATT	4 cut(s)	24, 133, 378, 630
MlyI	GAGTC	3 cut(s)	62, 398, 457
Mph1103I	ATGCAT	1 cut(s)	804
MroXI	GAANNNNTTC	1 cut(s)	870
MseI	TTAA	2 cut(s)	83, 126
Mva1269I	GAATGC	1 cut(s)	946
MwoI	GCNNNNNNNGC	6 cut(s)	293, 461, 682, 691, 716, 779
NcoI	CCATGG	1 cut(s)	714
NdeI	CATATG	1 cut(s)	804
NdeII	GATC	5 cut(s)	341, 355, 756, 961, 966
NlaIII	CATG	5 cut(s)	455, 563, 568, 619, 718
NlaIV	GGNNCC	4 cut(s)	193, 201, 675, 711
NmuCI	GTSAC	1 cut(s)	853
NsiI	ATGCAT	1 cut(s)	804
NspI	RCATGY	1 cut(s)	563
PciSI	GCTCTTC	1 cut(s)	605
PctI	GAATGC	1 cut(s)	946
PdmI	GAANNNNTTC	1 cut(s)	870
PfeI	GAWTC	2 cut(s)	749, 871
PkrI	GCNGC	4 cut(s)	262, 457, 580, 583
PleI	GAGTC	3 cut(s)	62, 397, 456
PpsI	GAGTC	3 cut(s)	62, 397, 456
PspN4I	GGNNCC	4 cut(s)	193, 201, 675, 711
PspPI	GGNCC	2 cut(s)	554, 647
PstI	CTGCAG	1 cut(s)	460
PstNI	CAGNNNCTG	2 cut(s)	590, 644
PsuI	RGATCY	2 cut(s)	341, 756
RsaI	GTAC	4 cut(s)	193, 275, 405, 794
RsaNI	GTAC	4 cut(s)	192, 274, 404, 793
SapI	GCTCTTC	1 cut(s)	605
SaqAI	TTAA	2 cut(s)	83, 126
SatI	GCNGC	4 cut(s)	261, 456, 579, 582
Sau3AI	GATC	5 cut(s)	341, 355, 756, 961, 966
Sau96I	GGNCC	2 cut(s)	554, 647
ScaI	AGTACT	1 cut(s)	275
SchI	GAGTC	3 cut(s)	62, 398, 457
SduI	GDGCHC	2 cut(s)	627, 712
SfaNI	GCATC	4 cut(s)	34, 148, 672, 789
SfcI	CTRYAG	1 cut(s)	456
SinI	GGWCC	1 cut(s)	647
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
Sse9I	AATT	4 cut(s)	24, 133, 378, 630
SspI	AATATT	1 cut(s)	501
SspMI	CTAG	3 cut(s)	162, 740, 875
StyI	CCWWGG	2 cut(s)	605, 714
TaaI	ACNGT	1 cut(s)	199
TasI	AATT	4 cut(s)	24, 133, 378, 630
TatI	WGTACW	3 cut(s)	273, 403, 792
TfiI	GAWTC	2 cut(s)	749, 871
Tru1I	TTAA	2 cut(s)	83, 126
Tru9I	TTAA	2 cut(s)	83, 126
TscAI	CASTG	2 cut(s)	109, 432
TseFI	GTSAC	1 cut(s)	853
TseI	GCWGC	4 cut(s)	260, 455, 578, 581
Tsp45I	GTSAC	1 cut(s)	853
TspDTI	ATGAA	1 cut(s)	879
TspGWI	ACGGA	1 cut(s)	348
TspRI	CASTG	2 cut(s)	109, 432
VpaK11BI	GGWCC	1 cut(s)	647
XapI	RAATTY	3 cut(s)	24, 133, 630
XceI	RCATGY	1 cut(s)	563
XcmI	CCANNNNNNNNNTGG	1 cut(s)	202
XmnI	GAANNNNTTC	1 cut(s)	870
XspI	CTAG	3 cut(s)	162, 740, 875
ZrmI	AGTACT	1 cut(s)	275
Zsp2I	ATGCAT	1 cut(s)	804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.