Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0001987

Physical Location & Seq

Genomic Coordinates Forward (+)

21136731 .. 21141111

Gene Structure 4381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1174000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGCTCTAACAAATGGGTTGGAAGTTCAAAAGGAAATCCTGGATGCCGAAATCAAGTCATTTTTTGACTCAGCTCCTCCTTTGAAGGACAGCGATGATATCAGTGGAAAACTTGAGGAATTTGTGAAGAAGAATTCAGTACCTTCCGGAAGTGGAGAAGTTAGGAGGGTCGTGTGTGTGACATCAGGTGGCACTACGGTTCCTCTAGAGCAACAATGTGTTCGCTACATTGACAACTTCAGCTCAGGTCACAGAGGAGCAGCATCCACAGAGTACTTTTTGAAGGCAGGTTATGCTGTTATCTTTCTATACCGAAGGGGCAGTTGCCAGCCATATTGCACATCTCTTCCCGATGATCCTTTGCTTGAAAGTTTTGAATGTACGGATGACTCAAATATTAAAGTGTGCCAGTCACATTCAGAAGTAGTGAGGAATGCCATCACTAAAACTCATGCTGCAGTAACAGGAGGCCTCTTGTTGAAACTTCCTTTCACAACCATATTCGAGTATCTTCAGATGTTGCAGATGATTGCATTTTCAATAAGAAGTCTCGGGCCACATGCAATTCTTTATCTTGCAGCTGCAGTGTCTGACTTTTATGTTCCGTGGAAAAGCATGGCAGAACACAAAATTCAGTCGGGATCTGGTCCATTGGACATGCGACTAGTTCAGGTGCCAAAGATGCTCTTAGTGCTGAGGAAAGACTGGGCGCCAAGGGCCTTCTGTATATCATTTAAGCTAGAGACGGATTCAAAGATTCTTTTAGAGAAGGCTGATATGGCTCTTAAGAAGTACAAGGTGCATATGGTTGTAGCGAATGAACTTTCAACCCGCAAGGAAGAGGTTGTAGTCGTCAGAAGTAATGAAAAGATATCAGTTCGCCGAAACCAATCTCCGGGTGTTGTTGATGTGGAGTGTCCACTAGTTGAACTTATTGTGGGAAGACATTCGGCGTATATCGAGAATCCTGATCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004632 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009987 GO:0015936 GO:0015937 GO:0016874 GO:0016879 GO:0016881 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

DFP

Protein Analysis

326

Amino Acids

36.14

Weight (kDa)

6.67

Isoelectric Point (pI)

46.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DFP	PF04127	175 - 289	7.4e-11	DNA/pantothenate metabolism flavoprotein C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12350 AT1G12350 AT5G02080 AT5G02080 AT5G02080 AT5G02080 AT5G02080 AT5G02080 AT5G02080
fragaria_vesca	FvH4_5g38402 FvH4_5g38402 FvH4_5g38420 FvH4_5g38420 FvH4_7g08221 FvH4_7g08221
malus_domestica	MD08G1174000.v1.1 MD15G1360400.v1.1
prunus_persica	Prupe.1G507900_v2.0.a1 Prupe.1G507900_v2.0.a1 Prupe.1G507900_v2.0.a1 Prupe.1G507900_v2.0.a1
pyrus_communis	pycom08g14920 pycom15g32230
rosa_chinensis	RchiOBHm_Chr1g0340891 RchiOBHm_Chr1g0340911 RchiOBHm_Chr7g0240421
rosa_laevigata	RLG00000000678 RLG00000029049
rosa_multiflora	Rmu_sc0001211.1_g000112 Rmu_sc0002676.1_g000001
rosa_roxburghii	Rroxscaffold_3G00220100
rosa_rugosa	Rorug01G0160900.1 Rorug07G0335900
rosa_samantha	Rh1AG175900 Rh1BG143900 Rh1CG163800 Rh1DG175600 Rh7AG490200 Rh7BG463100 Rh7CG506600 Rh7DG474200
rosa_wichuraiana	Rw0G004950 Rw1G014660 Rw7G041000 Rw7G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	278
AccB1I	GGYRCC	2 cut(s)	673, 709
AccIII	TCCGGA	1 cut(s)	146
AciI	CCGC	1 cut(s)	832
AclWI	GGATC	2 cut(s)	350, 649
AcsI	RAATTY	3 cut(s)	119, 133, 630
AcuI	CTGAAG	2 cut(s)	223, 497
AcyI	GRCGYC	1 cut(s)	710
AfaI	GTAC	4 cut(s)	141, 275, 382, 794
AfiI	CCNNNNNNNGG	1 cut(s)	895
AflII	CTTAAG	1 cut(s)	785
AhlI	ACTAGT	2 cut(s)	664, 922
AjnI	CCWGG	1 cut(s)	39
AluBI	AGCT	4 cut(s)	74, 243, 581, 739
AluI	AGCT	4 cut(s)	74, 243, 581, 739
Alw26I	GTCTC	2 cut(s)	554, 737
AlwI	GGATC	2 cut(s)	350, 649
AlwNI	CAGNNNCTG	1 cut(s)	590
Ama87I	CYCGRG	1 cut(s)	551
Aor13HI	TCCGGA	1 cut(s)	146
AoxI	GGCC	3 cut(s)	469, 554, 717
ApeKI	GCWGC	4 cut(s)	260, 455, 578, 581
ApoI	RAATTY	3 cut(s)	119, 133, 630
Asp700I	GAANNNNTTC	1 cut(s)	946
AspLEI	GCGC	1 cut(s)	712
AspS9I	GGNCC	3 cut(s)	554, 647, 717
AsuC2I	CCSGG	1 cut(s)	897
AvaI	CYCGRG	1 cut(s)	551
AvaII	GGWCC	1 cut(s)	647
BanI	GGYRCC	2 cut(s)	673, 709
BbsI	GAAGAC	1 cut(s)	949
BbvCI	CCTCAGC	1 cut(s)	695
BbvI	GCAGC	4 cut(s)	272, 442, 568, 590
BccI	CCATC	1 cut(s)	446
BciT130I	CCWGG	1 cut(s)	41
BcnI	CCSGG	1 cut(s)	897
BcoDI	GTCTC	2 cut(s)	554, 737
BcuI	ACTAGT	2 cut(s)	664, 922
BfaI	CTAG	4 cut(s)	206, 665, 740, 923
BfmI	CTRYAG	2 cut(s)	456, 582
BfoI	RGCGCY	1 cut(s)	713
BfrI	CTTAAG	1 cut(s)	785
BfuAI	ACCTGC	1 cut(s)	278
BisI	GCNGC	4 cut(s)	261, 456, 579, 582
BlsI	GCNGC	4 cut(s)	262, 457, 580, 583
BmcAI	AGTACT	1 cut(s)	275
Bme1390I	CCNGG	2 cut(s)	41, 897
Bme18I	GGWCC	1 cut(s)	647
BmeT110I	CYCGRG	1 cut(s)	551
BmgT120I	GGNCC	3 cut(s)	554, 647, 717
BmiI	GGNNCC	3 cut(s)	201, 675, 711
BmrFI	CCNGG	2 cut(s)	41, 897
BmrI	ACTGGG	1 cut(s)	715
BmsI	GCATC	3 cut(s)	34, 272, 672
BmuI	ACTGGG	1 cut(s)	715
BpiI	GAAGAC	1 cut(s)	949
Bpu10I	CCTNAGC	2 cut(s)	244, 695
BpuEI	CTTGAG	1 cut(s)	134
BpuMI	CCSGG	1 cut(s)	897
BsaHI	GRCGYC	1 cut(s)	710
BsaJI	CCNNGG	2 cut(s)	605, 713
BsaWI	WCCGGW	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	1 cut(s)	895
Bse1I	ACTGG	2 cut(s)	409, 710
BseAI	TCCGGA	1 cut(s)	146
BseBI	CCWGG	1 cut(s)	41
BseDI	CCNNGG	2 cut(s)	605, 713
BseGI	GGATG	3 cut(s)	49, 263, 391
BseLI	CCNNNNNNNGG	1 cut(s)	895
BseMII	CTCAG	3 cut(s)	84, 258, 686
BseNI	ACTGG	2 cut(s)	409, 710
BseRI	GAGGAG	2 cut(s)	66, 270
BseXI	GCAGC	4 cut(s)	272, 442, 568, 590
BshFI	GGCC	3 cut(s)	471, 556, 719
BshNI	GGYRCC	2 cut(s)	673, 709
BsiHKCI	CYCGRG	1 cut(s)	551
BsiSI	CCGG	2 cut(s)	147, 896
BslI	CCNNNNNNNGG	1 cut(s)	895
BsmAI	GTCTC	2 cut(s)	554, 737
BsmBI	CGTCTC	1 cut(s)	737
BsmI	GAATGC	1 cut(s)	439
BsnI	GGCC	3 cut(s)	471, 556, 719
BsoBI	CYCGRG	1 cut(s)	551
Bsp13I	TCCGGA	1 cut(s)	146
Bsp143I	GATC	3 cut(s)	355, 641, 970
BspACI	CCGC	1 cut(s)	832
BspANI	GGCC	3 cut(s)	471, 556, 719
BspCNI	CTCAG	3 cut(s)	83, 257, 687
BspEI	TCCGGA	1 cut(s)	146
BspLI	GGNNCC	3 cut(s)	201, 675, 711
BspMAI	CTGCAG	2 cut(s)	460, 586
BspMI	ACCTGC	1 cut(s)	278
BspPI	GGATC	2 cut(s)	350, 649
BspT107I	GGYRCC	2 cut(s)	673, 709
BspTI	CTTAAG	1 cut(s)	785
BsrI	ACTGG	2 cut(s)	409, 710
BssECI	CCNNGG	2 cut(s)	605, 713
BssMI	GATC	3 cut(s)	355, 641, 970
BssNI	GRCGYC	1 cut(s)	710
BssT1I	CCWWGG	1 cut(s)	713
Bst2UI	CCWGG	1 cut(s)	41
Bst4CI	ACNGT	1 cut(s)	199
Bst6I	CTCTTC	2 cut(s)	351, 834
BstACI	GRCGYC	1 cut(s)	710
BstAFI	CTTAAG	1 cut(s)	785
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstC8I	GCNNGC	1 cut(s)	329
BstDEI	CTNAG	4 cut(s)	70, 244, 688, 695
BstDSI	CCRYGG	1 cut(s)	605
BstF5I	GGATG	3 cut(s)	49, 263, 391
BstH2I	RGCGCY	1 cut(s)	713
BstHHI	GCGC	1 cut(s)	712
BstKTI	GATC	3 cut(s)	358, 644, 973
BstMAI	GTCTC	2 cut(s)	554, 737
BstMBI	GATC	3 cut(s)	355, 641, 970
BstMWI	GCNNNNNNNGC	5 cut(s)	293, 682, 691, 716, 779
BstNI	CCWGG	1 cut(s)	41
BstNSI	RCATGY	2 cut(s)	563, 661
BstSCI	CCNGG	2 cut(s)	39, 895
BstSFI	CTRYAG	2 cut(s)	456, 582
BstV1I	GCAGC	4 cut(s)	272, 442, 568, 590
BstV2I	GAAGAC	1 cut(s)	949
BstX2I	RGATCY	1 cut(s)	641
BstYI	RGATCY	1 cut(s)	641
BsuRI	GGCC	3 cut(s)	471, 556, 719
BtgI	CCRYGG	1 cut(s)	605
BtgZI	GCGATG	1 cut(s)	108
BtsCI	GGATG	3 cut(s)	49, 263, 391
BtsI	GCAGTG	1 cut(s)	591
BtsIMutI	CAGTG	2 cut(s)	109, 591
BveI	ACCTGC	1 cut(s)	278
Cac8I	GCNNGC	1 cut(s)	329
CaiI	CAGNNNCTG	1 cut(s)	590
CfoI	GCGC	1 cut(s)	712
Cfr13I	GGNCC	3 cut(s)	554, 647, 717
Csp6I	GTAC	4 cut(s)	140, 274, 381, 793
CviAII	CATG	4 cut(s)	452, 560, 616, 658
CviQI	GTAC	4 cut(s)	140, 274, 381, 793
DdeI	CTNAG	4 cut(s)	70, 244, 688, 695
DinI	GGCGCC	1 cut(s)	711
DpnI	GATC	3 cut(s)	357, 643, 972
DpnII	GATC	3 cut(s)	355, 641, 970
Eam1104I	CTCTTC	2 cut(s)	351, 834
EarI	CTCTTC	2 cut(s)	351, 834
Eco130I	CCWWGG	1 cut(s)	713
Eco147I	AGGCCT	1 cut(s)	471
Eco32I	GATATC	2 cut(s)	100, 873
Eco47I	GGWCC	1 cut(s)	647
Eco57I	CTGAAG	2 cut(s)	223, 497
Eco88I	CYCGRG	1 cut(s)	551
EcoO109I	RGGNCCY	1 cut(s)	717
EcoRI	GAATTC	1 cut(s)	133
EcoRII	CCWGG	1 cut(s)	39
EcoRV	GATATC	2 cut(s)	100, 873
EcoT14I	CCWWGG	1 cut(s)	713
EgeI	GGCGCC	1 cut(s)	711
EheI	GGCGCC	1 cut(s)	711
ErhI	CCWWGG	1 cut(s)	713
Esp3I	CGTCTC	1 cut(s)	737
FaeI	CATG	4 cut(s)	455, 563, 619, 661
FalI	AAGNNNNNCTT	2 cut(s)	671, 703
FatI	CATG	4 cut(s)	451, 559, 615, 657
FauI	CCCGC	1 cut(s)	839
FauNDI	CATATG	1 cut(s)	804
Fnu4HI	GCNGC	4 cut(s)	261, 456, 579, 582
FokI	GGATG	3 cut(s)	56, 250, 398
Fsp4HI	GCNGC	4 cut(s)	261, 456, 579, 582
FspBI	CTAG	4 cut(s)	206, 665, 740, 923
GlaI	GCGC	1 cut(s)	711
GluI	GCNGC	4 cut(s)	261, 456, 579, 582
HaeII	RGCGCY	1 cut(s)	713
HaeIII	GGCC	3 cut(s)	471, 556, 719
HapII	CCGG	2 cut(s)	147, 896
HhaI	GCGC	1 cut(s)	712
Hin1I	GRCGYC	1 cut(s)	710
Hin1II	CATG	4 cut(s)	455, 563, 619, 661
Hin6I	GCGC	1 cut(s)	710
HinP1I	GCGC	1 cut(s)	710
HinfI	GANTC	5 cut(s)	68, 389, 749, 757, 964
HpaII	CCGG	2 cut(s)	147, 896
Hpy166II	GTNNAC	1 cut(s)	920
Hpy188I	TCNGA	4 cut(s)	421, 516, 592, 857
Hpy188III	TCNNGA	6 cut(s)	147, 206, 350, 639, 961, 968
Hpy8I	GTNNAC	1 cut(s)	920
HpyAV	CCTTC	6 cut(s)	79, 153, 277, 309, 730, 763
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4V	TGCA	8 cut(s)	339, 458, 523, 533, 563, 578, 584, 802
HpyF10VI	GCNNNNNNNGC	5 cut(s)	293, 682, 691, 716, 779
HpyF3I	CTNAG	4 cut(s)	70, 244, 688, 695
Hsp92I	GRCGYC	1 cut(s)	710
Hsp92II	CATG	4 cut(s)	455, 563, 619, 661
HspAI	GCGC	1 cut(s)	710
KasI	GGCGCC	1 cut(s)	709
Kpn2I	TCCGGA	1 cut(s)	146
Kzo9I	GATC	3 cut(s)	355, 641, 970
LmnI	GCTCC	2 cut(s)	79, 257
Lsp1109I	GCAGC	4 cut(s)	272, 442, 568, 590
LweI	GCATC	3 cut(s)	34, 272, 672
MaeI	CTAG	4 cut(s)	206, 665, 740, 923
MaeIII	GTNAC	4 cut(s)	178, 248, 411, 460
MalI	GATC	3 cut(s)	357, 643, 972
MboI	GATC	3 cut(s)	355, 641, 970
MboII	GAAGA	6 cut(s)	139, 142, 338, 503, 851, 954
MflI	RGATCY	1 cut(s)	641
MluCI	AATT	4 cut(s)	119, 133, 564, 630
Mly113I	GGCGCC	1 cut(s)	710
MlyI	GAGTC	2 cut(s)	62, 383
MroI	TCCGGA	1 cut(s)	146
MroXI	GAANNNNTTC	1 cut(s)	946
MseI	TTAA	3 cut(s)	399, 735, 786
MspA1I	CMGCKG	1 cut(s)	581
MspCI	CTTAAG	1 cut(s)	785
MspI	CCGG	2 cut(s)	147, 896
MspR9I	CCNGG	2 cut(s)	41, 897
Mva1269I	GAATGC	1 cut(s)	439
MvaI	CCWGG	1 cut(s)	41
MwoI	GCNNNNNNNGC	5 cut(s)	293, 682, 691, 716, 779
NarI	GGCGCC	1 cut(s)	710
NciI	CCSGG	1 cut(s)	897
NdeI	CATATG	1 cut(s)	804
NdeII	GATC	3 cut(s)	355, 641, 970
NlaIII	CATG	4 cut(s)	455, 563, 619, 661
NlaIV	GGNNCC	3 cut(s)	201, 675, 711
NmuCI	GTSAC	3 cut(s)	178, 248, 411
NspI	RCATGY	2 cut(s)	563, 661
PceI	AGGCCT	1 cut(s)	471
PctI	GAATGC	1 cut(s)	439
PdmI	GAANNNNTTC	1 cut(s)	946
PfeI	GAWTC	3 cut(s)	749, 757, 964
PfoI	TCCNGGA	1 cut(s)	39
PkrI	GCNGC	4 cut(s)	262, 457, 580, 583
PleI	GAGTC	2 cut(s)	62, 383
PluTI	GGCGCC	1 cut(s)	713
PpsI	GAGTC	2 cut(s)	62, 383
Psp6I	CCWGG	1 cut(s)	39
PspGI	CCWGG	1 cut(s)	39
PspN4I	GGNNCC	3 cut(s)	201, 675, 711
PspPI	GGNCC	3 cut(s)	554, 647, 717
PstI	CTGCAG	2 cut(s)	460, 586
PstNI	CAGNNNCTG	1 cut(s)	590
PsuI	RGATCY	1 cut(s)	641
PvuII	CAGCTG	1 cut(s)	581
RsaI	GTAC	4 cut(s)	141, 275, 382, 794
RsaNI	GTAC	4 cut(s)	140, 274, 381, 793
SaqAI	TTAA	3 cut(s)	399, 735, 786
SatI	GCNGC	4 cut(s)	261, 456, 579, 582
Sau3AI	GATC	3 cut(s)	355, 641, 970
Sau96I	GGNCC	3 cut(s)	554, 647, 717
ScaI	AGTACT	1 cut(s)	275
SchI	GAGTC	2 cut(s)	62, 383
ScrFI	CCNGG	2 cut(s)	41, 897
SfaNI	GCATC	3 cut(s)	34, 272, 672
SfcI	CTRYAG	2 cut(s)	456, 582
SfoI	GGCGCC	1 cut(s)	711
SinI	GGWCC	1 cut(s)	647
SmlI	CTYRAG	2 cut(s)	113, 785
SmoI	CTYRAG	2 cut(s)	113, 785
SpeI	ACTAGT	2 cut(s)	664, 922
Sse9I	AATT	4 cut(s)	119, 133, 564, 630
SseBI	AGGCCT	1 cut(s)	471
SsiI	CCGC	1 cut(s)	832
SspDI	GGCGCC	1 cut(s)	709
SspI	AATATT	1 cut(s)	397
SspMI	CTAG	4 cut(s)	206, 665, 740, 923
StuI	AGGCCT	1 cut(s)	471
StyD4I	CCNGG	2 cut(s)	39, 895
StyI	CCWWGG	1 cut(s)	713
TaaI	ACNGT	1 cut(s)	199
TaqI	TCGA	2 cut(s)	504, 960
TasI	AATT	4 cut(s)	119, 133, 564, 630
TatI	WGTACW	2 cut(s)	273, 792
TfiI	GAWTC	3 cut(s)	749, 757, 964
Tru1I	TTAA	3 cut(s)	399, 735, 786
Tru9I	TTAA	3 cut(s)	399, 735, 786
TscAI	CASTG	2 cut(s)	109, 591
TseFI	GTSAC	3 cut(s)	178, 248, 411
TseI	GCWGC	4 cut(s)	260, 455, 578, 581
Tsp45I	GTSAC	3 cut(s)	178, 248, 411
TspDTI	ATGAA	2 cut(s)	834, 879
TspGWI	ACGGA	3 cut(s)	398, 594, 761
TspRI	CASTG	2 cut(s)	109, 591
Vha464I	CTTAAG	1 cut(s)	785
VpaK11BI	GGWCC	1 cut(s)	647
XapI	RAATTY	3 cut(s)	119, 133, 630
XbaI	TCTAGA	1 cut(s)	205
XceI	RCATGY	2 cut(s)	563, 661
XmnI	GAANNNNTTC	1 cut(s)	946
XspI	CTAG	4 cut(s)	206, 665, 740, 923
ZrmI	AGTACT	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.