Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001987

Physical Location & Seq

Genomic Coordinates Forward (+)

32745615 .. 32749028

Gene Structure 3414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G014660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGAAATTCTGGGTTCCTCAAATTTCGCTAGCGGATAAGGTCTTCCGACATATATGGGCAAATTTCAAAATGGCTCTAACAAATGGGTTGGAAATTCCTAAAGAAGTGCTGGATGCAGAAATCAAATCCTTTTTTGACTCGGCTCCTCCTATAAAGAACAAAGATGATGTCAGTGAAAAACTTGAGGCATTTGTTAAAAAGAATTCGCAGCCTTCTGGAAATGGAGGAGCTAAGAGGGTGGTTTGTGTAACCTCTGGTGGTACCACAGTTCCTCTGGAGCAACAATGTGTTCACTACATTGACAACTTCAGCTCAGGTCACAGAGGAGCAGCTTCCACAGAGTACTTTTTGAAGGCAGGCTATGCTGTTATCTTTCTTTATCGGAGGGGCTCTTGCCAACCATATTGCAGATCTCTTCCCGATGATCCGTTACTTAAATGTCTGGAAATTGTGGACGAGTCAAACATTCAAGTACACCAGTCCCATTCACAAGCAGTGAGGAGTGCTATCACTAAGACTCATGCTGCAGTAGCAGATGGCCTATTGCTGAAACTTCCCTTTACAACAATATTTGAGTATCTCCAGATGTTGCAGATGGTTGCATTTGCAATGCGAAGTATTGGACCACATGCCATGCTATATCTTGCAGCAGCAGTATCTGACTTTTACGTCCCTTGGAAGAGCATGGCAGCTCACAAAATTCAGTCAGGGTCTGGTCCATTGGATATGCAACTTGTTCAGGTGCCAAAGATGCTCTTAGTGCTGAGGAAAGACTGGGCCCCCATGGCCTTCTGCATATCATTCAAGCTAGAAACAGATTCAAAGATCCTGTTAGAGAAGGCTGATATGTCTCTTAGGAAGTACAAGATGCATACGGTAGTAGCCAATGAGCTTTTGAGCCGAGACGAAGAGGTCGTAGTTGTCACCAGCAATGAAAAGATTTCAGTTCGCCGAAACAAGTCTCTGGGTGTTGATGATGTGGAGAGCGCCCTTATTGAGCTTCTTGTGGAGAGGCATTCAGCTTATGTTGAGAATTCTGATCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004632 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009987 GO:0015936 GO:0015937 GO:0016874 GO:0016879 GO:0016881 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

DFP

Protein Analysis

348

Amino Acids

38.9

Weight (kDa)

7.65

Isoelectric Point (pI)

45.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DFP	PF04127	198 - 312	1.4e-09	DNA/pantothenate metabolism flavoprotein C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12350 AT1G12350 AT5G02080 AT5G02080 AT5G02080 AT5G02080 AT5G02080 AT5G02080 AT5G02080
fragaria_vesca	FvH4_5g38402 FvH4_5g38402 FvH4_5g38420 FvH4_5g38420 FvH4_7g08221 FvH4_7g08221
malus_domestica	MD08G1174000.v1.1 MD15G1360400.v1.1
prunus_persica	Prupe.1G507900_v2.0.a1 Prupe.1G507900_v2.0.a1 Prupe.1G507900_v2.0.a1 Prupe.1G507900_v2.0.a1
pyrus_communis	pycom08g14920 pycom15g32230
rosa_chinensis	RchiOBHm_Chr1g0340891 RchiOBHm_Chr1g0340911 RchiOBHm_Chr7g0240421
rosa_laevigata	RLG00000000678 RLG00000029049
rosa_multiflora	Rmu_sc0001211.1_g000112 Rmu_sc0002676.1_g000001
rosa_roxburghii	Rroxscaffold_3G00220100
rosa_rugosa	Rorug01G0160900.1 Rorug07G0335900
rosa_samantha	Rh1AG175900 Rh1BG143900 Rh1CG163800 Rh1DG175600 Rh7AG490200 Rh7BG463100 Rh7CG506600 Rh7DG474200
rosa_wichuraiana	Rw0G004950 Rw1G014660 Rw7G041000 Rw7G041050

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	668, 911
Acc65I	GGTACC	1 cut(s)	260
AccB1I	GGYRCC	2 cut(s)	260, 742
AciI	CCGC	1 cut(s)	32
AclWI	GGATC	2 cut(s)	419, 820
AcsI	RAATTY	7 cut(s)	5, 21, 61, 93, 202, 699, 1033
AcuI	CTGAAG	1 cut(s)	292
AfaI	GTAC	4 cut(s)	262, 344, 474, 863
AgsI	TTSAA	5 cut(s)	67, 352, 470, 805, 822
AluBI	AGCT	8 cut(s)	230, 312, 332, 692, 808, 892, 1000, 1022
AluI	AGCT	8 cut(s)	230, 312, 332, 692, 808, 892, 1000, 1022
Alw26I	GTCTC	3 cut(s)	855, 897, 966
AlwI	GGATC	2 cut(s)	419, 820
AlwNI	CAGNNNCTG	2 cut(s)	659, 713
AoxI	GGCC	3 cut(s)	538, 777, 786
ApaI	GGGCCC	1 cut(s)	781
ApeKI	GCWGC	6 cut(s)	208, 329, 524, 647, 650, 689
ApoI	RAATTY	7 cut(s)	5, 21, 61, 93, 202, 699, 1033
ArsI	GACNNNNNNTTYG	2 cut(s)	153, 185
Asp718I	GGTACC	1 cut(s)	260
AspLEI	GCGC	1 cut(s)	989
AspS9I	GGNCC	4 cut(s)	623, 716, 777, 778
AsuHPI	GGTGA	1 cut(s)	916
AsuNHI	GCTAGC	1 cut(s)	28
AvaII	GGWCC	2 cut(s)	623, 716
BaeGI	GKGCMC	1 cut(s)	781
BaeI	ACNNNNGTAYC	2 cut(s)	252, 285
BanI	GGYRCC	2 cut(s)	260, 742
BanII	GRGCYC	2 cut(s)	392, 781
BbsI	GAAGAC	1 cut(s)	34
BbvCI	CCTCAGC	1 cut(s)	764
BbvI	GCAGC	6 cut(s)	220, 341, 511, 659, 662, 701
BccI	CCATC	2 cut(s)	530, 589
BcoDI	GTCTC	3 cut(s)	855, 897, 966
BfaI	CTAG	2 cut(s)	29, 809
BfmI	CTRYAG	1 cut(s)	525
BfoI	RGCGCY	1 cut(s)	990
BglI	GCCNNNNNGGC	1 cut(s)	785
BglII	AGATCT	1 cut(s)	410
BisI	GCNGC	6 cut(s)	209, 330, 525, 648, 651, 690
BlsI	GCNGC	6 cut(s)	210, 331, 526, 649, 652, 691
BmcAI	AGTACT	1 cut(s)	344
Bme18I	GGWCC	2 cut(s)	623, 716
BmgT120I	GGNCC	4 cut(s)	623, 716, 777, 778
BmiI	GGNNCC	6 cut(s)	15, 144, 262, 744, 779, 780
BmrI	ACTGGG	1 cut(s)	784
BmsI	GCATC	3 cut(s)	103, 741, 858
BmtI	GCTAGC	1 cut(s)	32
BmuI	ACTGGG	1 cut(s)	784
BpiI	GAAGAC	1 cut(s)	34
BpmI	CTGGAG	2 cut(s)	296, 566
Bpu10I	CCTNAGC	2 cut(s)	313, 764
BpuEI	CTTGAG	1 cut(s)	203
BsaJI	CCNNGG	2 cut(s)	674, 783
Bse1I	ACTGG	2 cut(s)	478, 779
Bse3DI	GCAATG	2 cut(s)	615, 937
BseDI	CCNNGG	2 cut(s)	674, 783
BseGI	GGATG	1 cut(s)	118
BseMI	GCAATG	2 cut(s)	615, 937
BseMII	CTCAG	2 cut(s)	327, 755
BseNI	ACTGG	2 cut(s)	478, 779
BseRI	GAGGAG	4 cut(s)	135, 240, 339, 514
BseSI	GKGCMC	1 cut(s)	781
BseXI	GCAGC	6 cut(s)	220, 341, 511, 659, 662, 701
BshFI	GGCC	3 cut(s)	540, 779, 788
BshNI	GGYRCC	2 cut(s)	260, 742
BslFI	GGGAC	2 cut(s)	466, 656
BsmAI	GTCTC	3 cut(s)	855, 897, 966
BsmBI	CGTCTC	1 cut(s)	897
BsmFI	GGGAC	2 cut(s)	466, 656
BsmI	GAATGC	1 cut(s)	1015
BsnI	GGCC	3 cut(s)	540, 779, 788
Bsp120I	GGGCCC	1 cut(s)	777
Bsp1286I	GDGCHC	2 cut(s)	392, 781
Bsp143I	GATC	4 cut(s)	410, 424, 825, 1039
Bsp19I	CCATGG	1 cut(s)	783
BspACI	CCGC	1 cut(s)	32
BspANI	GGCC	3 cut(s)	540, 779, 788
BspCNI	CTCAG	2 cut(s)	326, 756
BspLI	GGNNCC	6 cut(s)	15, 144, 262, 744, 779, 780
BspMAI	CTGCAG	1 cut(s)	529
BspOI	GCTAGC	1 cut(s)	32
BspPI	GGATC	2 cut(s)	419, 820
BspQI	GCTCTTC	1 cut(s)	674
BspT107I	GGYRCC	2 cut(s)	260, 742
BsrDI	GCAATG	2 cut(s)	615, 937
BsrI	ACTGG	2 cut(s)	478, 779
BssECI	CCNNGG	2 cut(s)	674, 783
BssMI	GATC	4 cut(s)	410, 424, 825, 1039
BssT1I	CCWWGG	2 cut(s)	674, 783
Bst4CI	ACNGT	2 cut(s)	268, 877
Bst6I	CTCTTC	3 cut(s)	420, 674, 903
BstAPI	GCANNNNNTGC	1 cut(s)	362
BstC8I	GCNNGC	2 cut(s)	30, 358
BstDEI	CTNAG	6 cut(s)	231, 313, 513, 757, 764, 854
BstDSI	CCRYGG	1 cut(s)	783
BstF5I	GGATG	1 cut(s)	118
BstH2I	RGCGCY	1 cut(s)	990
BstHHI	GCGC	1 cut(s)	989
BstKTI	GATC	4 cut(s)	413, 427, 828, 1042
BstMAI	GTCTC	3 cut(s)	855, 897, 966
BstMBI	GATC	4 cut(s)	410, 424, 825, 1039
BstMWI	GCNNNNNNNGC	5 cut(s)	362, 530, 751, 760, 785
BstNSI	RCATGY	1 cut(s)	632
BstSFI	CTRYAG	1 cut(s)	525
BstSLI	GKGCMC	1 cut(s)	781
BstV1I	GCAGC	6 cut(s)	220, 341, 511, 659, 662, 701
BstV2I	GAAGAC	1 cut(s)	34
BstX2I	RGATCY	2 cut(s)	410, 825
BstYI	RGATCY	2 cut(s)	410, 825
BsuRI	GGCC	3 cut(s)	540, 779, 788
BtgI	CCRYGG	1 cut(s)	783
BtsCI	GGATG	1 cut(s)	118
BtsI	GCAGTG	1 cut(s)	501
BtsIMutI	CAGTG	2 cut(s)	178, 501
Cac8I	GCNNGC	2 cut(s)	30, 358
CaiI	CAGNNNCTG	2 cut(s)	659, 713
CfoI	GCGC	1 cut(s)	989
Cfr13I	GGNCC	4 cut(s)	623, 716, 777, 778
Csp6I	GTAC	4 cut(s)	261, 343, 473, 862
CviAII	CATG	5 cut(s)	521, 629, 634, 685, 784
CviQI	GTAC	4 cut(s)	261, 343, 473, 862
DdeI	CTNAG	6 cut(s)	231, 313, 513, 757, 764, 854
DpnI	GATC	4 cut(s)	412, 426, 827, 1041
DpnII	GATC	4 cut(s)	410, 424, 825, 1039
DrdI	GACNNNNNNGTC	2 cut(s)	668, 911
DseDI	GACNNNNNNGTC	2 cut(s)	668, 911
Eam1104I	CTCTTC	3 cut(s)	420, 674, 903
EarI	CTCTTC	3 cut(s)	420, 674, 903
Eco130I	CCWWGG	2 cut(s)	674, 783
Eco24I	GRGCYC	2 cut(s)	392, 781
Eco47I	GGWCC	2 cut(s)	623, 716
Eco57I	CTGAAG	1 cut(s)	292
EcoO109I	RGGNCCY	1 cut(s)	778
EcoRI	GAATTC	2 cut(s)	202, 1033
EcoT14I	CCWWGG	2 cut(s)	674, 783
EcoT22I	ATGCAT	1 cut(s)	873
EcoT38I	GRGCYC	2 cut(s)	392, 781
ErhI	CCWWGG	2 cut(s)	674, 783
Esp3I	CGTCTC	1 cut(s)	897
FaeI	CATG	5 cut(s)	524, 632, 637, 688, 787
FalI	AAGNNNNNCTT	2 cut(s)	740, 772
FaqI	GGGAC	2 cut(s)	466, 656
FatI	CATG	5 cut(s)	520, 628, 633, 684, 783
Fnu4HI	GCNGC	6 cut(s)	209, 330, 525, 648, 651, 690
FokI	GGATG	1 cut(s)	125
FriOI	GRGCYC	2 cut(s)	392, 781
Fsp4HI	GCNGC	6 cut(s)	209, 330, 525, 648, 651, 690
FspBI	CTAG	2 cut(s)	29, 809
GlaI	GCGC	1 cut(s)	988
GluI	GCNGC	6 cut(s)	209, 330, 525, 648, 651, 690
GsuI	CTGGAG	2 cut(s)	296, 566
HaeII	RGCGCY	1 cut(s)	990
HaeIII	GGCC	3 cut(s)	540, 779, 788
HhaI	GCGC	1 cut(s)	989
Hin1II	CATG	5 cut(s)	524, 632, 637, 688, 787
Hin6I	GCGC	1 cut(s)	987
HinP1I	GCGC	1 cut(s)	987
HinfI	GANTC	4 cut(s)	137, 458, 517, 818
HphI	GGTGA	1 cut(s)	916
Hpy166II	GTNNAC	3 cut(s)	292, 454, 475
Hpy188I	TCNGA	4 cut(s)	47, 384, 661, 1039
Hpy188III	TCNNGA	5 cut(s)	216, 275, 419, 443, 583
Hpy8I	GTNNAC	3 cut(s)	292, 454, 475
HpyAV	CCTTC	4 cut(s)	222, 346, 799, 832
HpyCH4III	ACNGT	2 cut(s)	268, 877
HpyCH4IV	ACGT	1 cut(s)	669
HpyF10VI	GCNNNNNNNGC	5 cut(s)	362, 530, 751, 760, 785
HpyF3I	CTNAG	6 cut(s)	231, 313, 513, 757, 764, 854
HpySE526I	ACGT	1 cut(s)	669
Hsp92II	CATG	5 cut(s)	524, 632, 637, 688, 787
HspAI	GCGC	1 cut(s)	987
KpnI	GGTACC	1 cut(s)	264
Kzo9I	GATC	4 cut(s)	410, 424, 825, 1039
LguI	GCTCTTC	1 cut(s)	674
LmnI	GCTCC	4 cut(s)	148, 227, 277, 326
Lsp1109I	GCAGC	6 cut(s)	220, 341, 511, 659, 662, 701
LweI	GCATC	3 cut(s)	103, 741, 858
MaeI	CTAG	2 cut(s)	29, 809
MaeII	ACGT	1 cut(s)	669
MaeIII	GTNAC	4 cut(s)	247, 317, 429, 922
MalI	GATC	4 cut(s)	412, 426, 827, 1041
MboI	GATC	4 cut(s)	410, 424, 825, 1039
MboII	GAAGA	4 cut(s)	34, 407, 691, 920
MflI	RGATCY	2 cut(s)	410, 825
MhlI	GDGCHC	2 cut(s)	392, 781
MluCI	AATT	8 cut(s)	5, 21, 61, 93, 202, 447, 699, 1033
MlyI	GAGTC	3 cut(s)	131, 467, 511
MmeI	TCCRAC	2 cut(s)	69, 70
Mph1103I	ATGCAT	1 cut(s)	873
MseI	TTAA	2 cut(s)	195, 435
Mva1269I	GAATGC	1 cut(s)	1015
MwoI	GCNNNNNNNGC	5 cut(s)	362, 530, 751, 760, 785
NcoI	CCATGG	1 cut(s)	783
NdeII	GATC	4 cut(s)	410, 424, 825, 1039
NheI	GCTAGC	1 cut(s)	28
NlaIII	CATG	5 cut(s)	524, 632, 637, 688, 787
NlaIV	GGNNCC	6 cut(s)	15, 144, 262, 744, 779, 780
NmeAIII	GCCGAG	2 cut(s)	119, 926
NmuCI	GTSAC	2 cut(s)	317, 922
NsiI	ATGCAT	1 cut(s)	873
NspI	RCATGY	1 cut(s)	632
PciSI	GCTCTTC	1 cut(s)	674
PcsI	WCGNNNNNNNCGW	1 cut(s)	912
PctI	GAATGC	1 cut(s)	1015
PfeI	GAWTC	1 cut(s)	818
PkrI	GCNGC	6 cut(s)	210, 331, 526, 649, 652, 691
PleI	GAGTC	3 cut(s)	131, 466, 511
PpsI	GAGTC	3 cut(s)	131, 466, 511
PspN4I	GGNNCC	6 cut(s)	15, 144, 262, 744, 779, 780
PspOMI	GGGCCC	1 cut(s)	777
PspPI	GGNCC	4 cut(s)	623, 716, 777, 778
PstI	CTGCAG	1 cut(s)	529
PstNI	CAGNNNCTG	2 cut(s)	659, 713
PsuI	RGATCY	2 cut(s)	410, 825
RsaI	GTAC	4 cut(s)	262, 344, 474, 863
RsaNI	GTAC	4 cut(s)	261, 343, 473, 862
SapI	GCTCTTC	1 cut(s)	674
SaqAI	TTAA	2 cut(s)	195, 435
SatI	GCNGC	6 cut(s)	209, 330, 525, 648, 651, 690
Sau3AI	GATC	4 cut(s)	410, 424, 825, 1039
Sau96I	GGNCC	4 cut(s)	623, 716, 777, 778
ScaI	AGTACT	1 cut(s)	344
SchI	GAGTC	3 cut(s)	131, 467, 511
SduI	GDGCHC	2 cut(s)	392, 781
SfaNI	GCATC	3 cut(s)	103, 741, 858
SfcI	CTRYAG	1 cut(s)	525
SfiI	GGCCNNNNNGGCC	1 cut(s)	785
SinI	GGWCC	2 cut(s)	623, 716
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	8 cut(s)	5, 21, 61, 93, 202, 447, 699, 1033
SsiI	CCGC	1 cut(s)	32
SspI	AATATT	1 cut(s)	570
SspMI	CTAG	2 cut(s)	29, 809
StyI	CCWWGG	2 cut(s)	674, 783
TaaI	ACNGT	2 cut(s)	268, 877
TaiI	ACGT	1 cut(s)	672
TasI	AATT	8 cut(s)	5, 21, 61, 93, 202, 447, 699, 1033
TatI	WGTACW	3 cut(s)	342, 472, 861
TfiI	GAWTC	1 cut(s)	818
Tru1I	TTAA	2 cut(s)	195, 435
Tru9I	TTAA	2 cut(s)	195, 435
TscAI	CASTG	2 cut(s)	178, 501
TseFI	GTSAC	2 cut(s)	317, 922
TseI	GCWGC	6 cut(s)	208, 329, 524, 647, 650, 689
Tsp45I	GTSAC	2 cut(s)	317, 922
TspDTI	ATGAA	2 cut(s)	17, 948
TspGWI	ACGGA	1 cut(s)	417
TspRI	CASTG	2 cut(s)	178, 501
VpaK11BI	GGWCC	2 cut(s)	623, 716
XapI	RAATTY	7 cut(s)	5, 21, 61, 93, 202, 699, 1033
XceI	RCATGY	1 cut(s)	632
XcmI	CCANNNNNNNNNTGG	1 cut(s)	271
XspI	CTAG	2 cut(s)	29, 809
ZrmI	AGTACT	1 cut(s)	344
Zsp2I	ATGCAT	1 cut(s)	873

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.