Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001987

Physical Location & Seq

Genomic Coordinates Forward (+)

31156315 .. 31159613

Gene Structure 3299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g32230.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGCTTTATCAAATGGGTTGGAAGCTCAAAAAGAAATACCGGATGCTGAAATCAAGTCATTTTTCGACTCAGCTCCTCCTTTGAAGAACAGTGATGATATCAGTGGAAAGCTTGAGGGATTTGTGAAGAAGAATTCGACACCTTCTGGAAGTGGAGGAGCTAGGAGGGTTGTGTGTGTGACATCAGGTGGCACCACCATTCCTCTGGAGCAACGATGTGTTCGCTACATAGACAACTTCAGCTCAGGTCACAGGGGAGCAGCATCCACAGAGTACTTTTTGAAGGCAGGTTATGCTGTTATTTTTCTATATCGAAGGGGTACTTGCCAGCCATATTGCAGATCACTTCCCGCTGATCCTTTGCTTGAATGTTTTGAATATACGGATGACTCAAATATTAACGTGTGCCAGTCACATTCGGAAGCAGTGAGGAATGCCATCACTGAAAGTCACGCCGCACTAACAGGAGGCCTCTTGTTAAAACTTCCCTTCACAACCATATTTGAGTATCTTCAGATGTTGCAGATGATTGCTTTTTCAATAAGAAGTCTCGGGCCACATGCAATTCTTTACCTTGCAGCTGCAGTGTCTGACTTTTATGTTCCTTGGAAAAGCATGGCAGAACACAAAATTCAGTCAGGATCTGGTCCATTGGACATGCGACTTGTTCAGGTGCCAAAGATGCTATTAGTGCTGAGGAAAGACTGGGCGCCAACGGCCTTCTGTGTATCATTTAAGCTAGAGACGGATTCGAAGATTCTTTTGGAGAAGGCTGATATGGCTCTTAAGAAGTACAAGGTGCATATGGTTGTAGCAAATGAGCTTTCAACCCGCAAGGAAGAGGTTGTAGTTGTCAGACGCAATGAAAAGATATCAGTTCGCCGAAACCAGTCTCTGGGTGTTGATGATGTGGAGAAACCGCTTATTGACCTTATCGTGGGAAGACATTCGGCTTATCTCGAGAATCCTGATTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004632 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009987 GO:0015936 GO:0015937 GO:0016874 GO:0016879 GO:0016881 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

DFP

Protein Analysis

326

Amino Acids

36.07

Weight (kDa)

8.08

Isoelectric Point (pI)

38.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12350 AT1G12350 AT5G02080 AT5G02080 AT5G02080 AT5G02080 AT5G02080 AT5G02080 AT5G02080
fragaria_vesca	FvH4_5g38402 FvH4_5g38402 FvH4_5g38420 FvH4_5g38420 FvH4_7g08221 FvH4_7g08221
malus_domestica	MD08G1174000.v1.1 MD15G1360400.v1.1
prunus_persica	Prupe.1G507900_v2.0.a1 Prupe.1G507900_v2.0.a1 Prupe.1G507900_v2.0.a1 Prupe.1G507900_v2.0.a1
pyrus_communis	pycom08g14920 pycom15g32230
rosa_chinensis	RchiOBHm_Chr1g0340891 RchiOBHm_Chr1g0340911 RchiOBHm_Chr7g0240421
rosa_laevigata	RLG00000000678 RLG00000029049
rosa_multiflora	Rmu_sc0001211.1_g000112 Rmu_sc0002676.1_g000001
rosa_roxburghii	Rroxscaffold_3G00220100
rosa_rugosa	Rorug01G0160900.1 Rorug07G0335900
rosa_samantha	Rh1AG175900 Rh1BG143900 Rh1CG163800 Rh1DG175600 Rh7AG490200 Rh7BG463100 Rh7CG506600 Rh7DG474200
rosa_wichuraiana	Rw0G004950 Rw1G014660 Rw7G041000 Rw7G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	278
AccB1I	GGYRCC	3 cut(s)	191, 673, 709
AccB7I	CCANNNNNTGG	1 cut(s)	895
AciI	CCGC	4 cut(s)	351, 456, 832, 920
AclWI	GGATC	2 cut(s)	350, 649
AcsI	RAATTY	2 cut(s)	133, 630
AcuI	CTGAAG	2 cut(s)	223, 497
AcyI	GRCGYC	1 cut(s)	710
AfaI	GTAC	3 cut(s)	275, 322, 794
AfiI	CCNNNNNNNGG	2 cut(s)	895, 937
AflII	CTTAAG	1 cut(s)	785
AflIII	ACRYGT	1 cut(s)	402
AgsI	TTSAA	6 cut(s)	85, 283, 368, 377, 540, 828
AjuI	GAANNNNNNNTTGG	2 cut(s)	746, 778
AluBI	AGCT	8 cut(s)	26, 74, 112, 161, 243, 581, 739, 823
AluI	AGCT	8 cut(s)	26, 74, 112, 161, 243, 581, 739, 823
Alw26I	GTCTC	3 cut(s)	554, 737, 897
AlwI	GGATC	2 cut(s)	350, 649
AlwNI	CAGNNNCTG	3 cut(s)	590, 644, 895
Ama87I	CYCGRG	2 cut(s)	551, 959
AoxI	GGCC	3 cut(s)	469, 554, 717
ApeKI	GCWGC	3 cut(s)	260, 578, 581
ApoI	RAATTY	2 cut(s)	133, 630
Asp700I	GAANNNNTTC	1 cut(s)	946
AspLEI	GCGC	1 cut(s)	712
AspS9I	GGNCC	2 cut(s)	554, 647
AsuII	TTCGAA	1 cut(s)	752
AvaI	CYCGRG	2 cut(s)	551, 959
AvaII	GGWCC	1 cut(s)	647
BanI	GGYRCC	3 cut(s)	191, 673, 709
BbsI	GAAGAC	1 cut(s)	949
BbvCI	CCTCAGC	1 cut(s)	695
BbvI	GCAGC	3 cut(s)	272, 568, 590
BccI	CCATC	1 cut(s)	446
BceAI	ACGGC	1 cut(s)	732
BcoDI	GTCTC	3 cut(s)	554, 737, 897
BfaI	CTAG	2 cut(s)	162, 740
BfmI	CTRYAG	1 cut(s)	582
BfoI	RGCGCY	1 cut(s)	713
BfrI	CTTAAG	1 cut(s)	785
BfuAI	ACCTGC	1 cut(s)	278
BisI	GCNGC	4 cut(s)	261, 456, 579, 582
BlsI	GCNGC	4 cut(s)	262, 457, 580, 583
BmcAI	AGTACT	1 cut(s)	275
Bme18I	GGWCC	1 cut(s)	647
BmeT110I	CYCGRG	2 cut(s)	551, 959
BmgT120I	GGNCC	2 cut(s)	554, 647
BmiI	GGNNCC	3 cut(s)	193, 675, 711
BmrI	ACTGGG	1 cut(s)	715
BmsI	GCATC	3 cut(s)	34, 272, 672
BmuI	ACTGGG	1 cut(s)	715
BpiI	GAAGAC	1 cut(s)	949
BpmI	CTGGAG	1 cut(s)	227
Bpu10I	CCTNAGC	2 cut(s)	244, 695
Bpu14I	TTCGAA	1 cut(s)	752
BpuEI	CTTGAG	1 cut(s)	134
BsaHI	GRCGYC	1 cut(s)	710
BsaJI	CCNNGG	1 cut(s)	605
BsaWI	WCCGGW	1 cut(s)	40
Bsc4I	CCNNNNNNNGG	2 cut(s)	895, 937
Bse1I	ACTGG	3 cut(s)	409, 710, 889
Bse3DI	GCAATG	1 cut(s)	868
BseDI	CCNNGG	1 cut(s)	605
BseGI	GGATG	3 cut(s)	49, 263, 391
BseLI	CCNNNNNNNGG	2 cut(s)	895, 937
BseMI	GCAATG	1 cut(s)	868
BseMII	CTCAG	3 cut(s)	84, 258, 686
BseNI	ACTGG	3 cut(s)	409, 710, 889
BseRI	GAGGAG	2 cut(s)	66, 171
BseXI	GCAGC	3 cut(s)	272, 568, 590
BshFI	GGCC	3 cut(s)	471, 556, 719
BshNI	GGYRCC	3 cut(s)	191, 673, 709
BsiHKCI	CYCGRG	2 cut(s)	551, 959
BsiSI	CCGG	1 cut(s)	41
BslI	CCNNNNNNNGG	2 cut(s)	895, 937
BsmAI	GTCTC	3 cut(s)	554, 737, 897
BsmBI	CGTCTC	1 cut(s)	737
BsmI	GAATGC	1 cut(s)	439
BsnI	GGCC	3 cut(s)	471, 556, 719
BsoBI	CYCGRG	2 cut(s)	551, 959
Bsp119I	TTCGAA	1 cut(s)	752
Bsp143I	GATC	3 cut(s)	341, 355, 641
BspACI	CCGC	4 cut(s)	351, 456, 832, 920
BspANI	GGCC	3 cut(s)	471, 556, 719
BspCNI	CTCAG	3 cut(s)	83, 257, 687
BspLI	GGNNCC	3 cut(s)	193, 675, 711
BspMAI	CTGCAG	1 cut(s)	586
BspMI	ACCTGC	1 cut(s)	278
BspPI	GGATC	2 cut(s)	350, 649
BspT104I	TTCGAA	1 cut(s)	752
BspT107I	GGYRCC	3 cut(s)	191, 673, 709
BspTI	CTTAAG	1 cut(s)	785
BsrDI	GCAATG	1 cut(s)	868
BsrI	ACTGG	3 cut(s)	409, 710, 889
BssECI	CCNNGG	1 cut(s)	605
BssMI	GATC	3 cut(s)	341, 355, 641
BssNI	GRCGYC	1 cut(s)	710
BssT1I	CCWWGG	1 cut(s)	605
Bst4CI	ACNGT	1 cut(s)	92
Bst6I	CTCTTC	1 cut(s)	834
BstACI	GRCGYC	1 cut(s)	710
BstAFI	CTTAAG	1 cut(s)	785
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstBI	TTCGAA	1 cut(s)	752
BstC8I	GCNNGC	1 cut(s)	329
BstDEI	CTNAG	3 cut(s)	70, 244, 695
BstF5I	GGATG	3 cut(s)	49, 263, 391
BstH2I	RGCGCY	1 cut(s)	713
BstHHI	GCGC	1 cut(s)	712
BstKTI	GATC	3 cut(s)	344, 358, 644
BstMAI	GTCTC	3 cut(s)	554, 737, 897
BstMBI	GATC	3 cut(s)	341, 355, 641
BstMWI	GCNNNNNNNGC	5 cut(s)	293, 682, 691, 716, 779
BstNSI	RCATGY	2 cut(s)	563, 661
BstSFI	CTRYAG	1 cut(s)	582
BstV1I	GCAGC	3 cut(s)	272, 568, 590
BstV2I	GAAGAC	1 cut(s)	949
BstX2I	RGATCY	1 cut(s)	641
BstXI	CCANNNNNNTGG	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	641
BsuRI	GGCC	3 cut(s)	471, 556, 719
BtsCI	GGATG	3 cut(s)	49, 263, 391
BtsI	GCAGTG	2 cut(s)	432, 591
BtsIMutI	CAGTG	5 cut(s)	97, 109, 432, 441, 591
BveI	ACCTGC	1 cut(s)	278
Cac8I	GCNNGC	1 cut(s)	329
CaiI	CAGNNNCTG	3 cut(s)	590, 644, 895
CfoI	GCGC	1 cut(s)	712
Cfr13I	GGNCC	2 cut(s)	554, 647
CseI	GACGC	1 cut(s)	867
Csp6I	GTAC	3 cut(s)	274, 321, 793
CviAII	CATG	3 cut(s)	560, 616, 658
CviQI	GTAC	3 cut(s)	274, 321, 793
DdeI	CTNAG	3 cut(s)	70, 244, 695
DinI	GGCGCC	1 cut(s)	711
DpnI	GATC	3 cut(s)	343, 357, 643
DpnII	GATC	3 cut(s)	341, 355, 641
Eam1104I	CTCTTC	1 cut(s)	834
EarI	CTCTTC	1 cut(s)	834
Eco130I	CCWWGG	1 cut(s)	605
Eco147I	AGGCCT	1 cut(s)	471
Eco32I	GATATC	2 cut(s)	100, 873
Eco47I	GGWCC	1 cut(s)	647
Eco57I	CTGAAG	2 cut(s)	223, 497
Eco88I	CYCGRG	2 cut(s)	551, 959
EcoRI	GAATTC	1 cut(s)	133
EcoRV	GATATC	2 cut(s)	100, 873
EcoT14I	CCWWGG	1 cut(s)	605
EgeI	GGCGCC	1 cut(s)	711
EheI	GGCGCC	1 cut(s)	711
ErhI	CCWWGG	1 cut(s)	605
Esp3I	CGTCTC	1 cut(s)	737
FaeI	CATG	3 cut(s)	563, 619, 661
FalI	AAGNNNNNCTT	2 cut(s)	307, 339
FatI	CATG	3 cut(s)	559, 615, 657
FauI	CCCGC	2 cut(s)	358, 839
FauNDI	CATATG	1 cut(s)	804
Fnu4HI	GCNGC	4 cut(s)	261, 456, 579, 582
FokI	GGATG	3 cut(s)	56, 250, 398
Fsp4HI	GCNGC	4 cut(s)	261, 456, 579, 582
FspBI	CTAG	2 cut(s)	162, 740
GlaI	GCGC	1 cut(s)	711
GluI	GCNGC	4 cut(s)	261, 456, 579, 582
GsuI	CTGGAG	1 cut(s)	227
HaeII	RGCGCY	1 cut(s)	713
HaeIII	GGCC	3 cut(s)	471, 556, 719
HapII	CCGG	1 cut(s)	41
HgaI	GACGC	1 cut(s)	867
HhaI	GCGC	1 cut(s)	712
Hin1I	GRCGYC	1 cut(s)	710
Hin1II	CATG	3 cut(s)	563, 619, 661
Hin6I	GCGC	1 cut(s)	710
HinP1I	GCGC	1 cut(s)	710
HindIII	AAGCTT	1 cut(s)	110
HinfI	GANTC	5 cut(s)	68, 389, 749, 757, 964
HpaII	CCGG	1 cut(s)	41
Hpy188I	TCNGA	4 cut(s)	421, 516, 592, 857
Hpy188III	TCNNGA	6 cut(s)	147, 206, 639, 959, 961, 968
HpyAV	CCTTC	6 cut(s)	153, 277, 309, 499, 730, 763
HpyCH4III	ACNGT	1 cut(s)	92
HpyCH4IV	ACGT	1 cut(s)	402
HpyCH4V	TGCA	6 cut(s)	339, 523, 563, 578, 584, 802
HpyF10VI	GCNNNNNNNGC	5 cut(s)	293, 682, 691, 716, 779
HpyF3I	CTNAG	3 cut(s)	70, 244, 695
HpySE526I	ACGT	1 cut(s)	402
Hsp92I	GRCGYC	1 cut(s)	710
Hsp92II	CATG	3 cut(s)	563, 619, 661
HspAI	GCGC	1 cut(s)	710
KasI	GGCGCC	1 cut(s)	709
Kzo9I	GATC	3 cut(s)	341, 355, 641
LmnI	GCTCC	4 cut(s)	79, 158, 208, 257
Lsp1109I	GCAGC	3 cut(s)	272, 568, 590
LweI	GCATC	3 cut(s)	34, 272, 672
MaeI	CTAG	2 cut(s)	162, 740
MaeII	ACGT	1 cut(s)	402
MaeIII	GTNAC	4 cut(s)	178, 248, 411, 449
MalI	GATC	3 cut(s)	343, 357, 643
MboI	GATC	3 cut(s)	341, 355, 641
MboII	GAAGA	7 cut(s)	97, 139, 142, 503, 766, 851, 954
MflI	RGATCY	1 cut(s)	641
MluCI	AATT	3 cut(s)	133, 564, 630
Mly113I	GGCGCC	1 cut(s)	710
MlyI	GAGTC	2 cut(s)	62, 383
MroXI	GAANNNNTTC	1 cut(s)	946
MseI	TTAA	4 cut(s)	399, 479, 735, 786
MspA1I	CMGCKG	2 cut(s)	353, 581
MspCI	CTTAAG	1 cut(s)	785
MspI	CCGG	1 cut(s)	41
Mva1269I	GAATGC	1 cut(s)	439
MwoI	GCNNNNNNNGC	5 cut(s)	293, 682, 691, 716, 779
NarI	GGCGCC	1 cut(s)	710
NdeI	CATATG	1 cut(s)	804
NdeII	GATC	3 cut(s)	341, 355, 641
NlaIII	CATG	3 cut(s)	563, 619, 661
NlaIV	GGNNCC	3 cut(s)	193, 675, 711
NmuCI	GTSAC	4 cut(s)	178, 248, 411, 449
NspI	RCATGY	2 cut(s)	563, 661
NspV	TTCGAA	1 cut(s)	752
PaeR7I	CTCGAG	1 cut(s)	959
PceI	AGGCCT	1 cut(s)	471
PctI	GAATGC	1 cut(s)	439
PdmI	GAANNNNTTC	1 cut(s)	946
PfeI	GAWTC	3 cut(s)	749, 757, 964
PflMI	CCANNNNNTGG	1 cut(s)	895
PkrI	GCNGC	4 cut(s)	262, 457, 580, 583
PleI	GAGTC	2 cut(s)	62, 383
PluTI	GGCGCC	1 cut(s)	713
PpsI	GAGTC	2 cut(s)	62, 383
PspN4I	GGNNCC	3 cut(s)	193, 675, 711
PspPI	GGNCC	2 cut(s)	554, 647
PstI	CTGCAG	1 cut(s)	586
PstNI	CAGNNNCTG	3 cut(s)	590, 644, 895
PsuI	RGATCY	1 cut(s)	641
PvuII	CAGCTG	1 cut(s)	581
RsaI	GTAC	3 cut(s)	275, 322, 794
RsaNI	GTAC	3 cut(s)	274, 321, 793
SaqAI	TTAA	4 cut(s)	399, 479, 735, 786
SatI	GCNGC	4 cut(s)	261, 456, 579, 582
Sau3AI	GATC	3 cut(s)	341, 355, 641
Sau96I	GGNCC	2 cut(s)	554, 647
ScaI	AGTACT	1 cut(s)	275
SchI	GAGTC	2 cut(s)	62, 383
SfaNI	GCATC	3 cut(s)	34, 272, 672
SfcI	CTRYAG	1 cut(s)	582
SfoI	GGCGCC	1 cut(s)	711
Sfr274I	CTCGAG	1 cut(s)	959
SfuI	TTCGAA	1 cut(s)	752
SinI	GGWCC	1 cut(s)	647
SlaI	CTCGAG	1 cut(s)	959
SmlI	CTYRAG	3 cut(s)	113, 785, 959
SmoI	CTYRAG	3 cut(s)	113, 785, 959
Sse9I	AATT	3 cut(s)	133, 564, 630
SseBI	AGGCCT	1 cut(s)	471
SsiI	CCGC	4 cut(s)	351, 456, 832, 920
SspDI	GGCGCC	1 cut(s)	709
SspI	AATATT	1 cut(s)	397
SspMI	CTAG	2 cut(s)	162, 740
StuI	AGGCCT	1 cut(s)	471
StyI	CCWWGG	1 cut(s)	605
TaaI	ACNGT	1 cut(s)	92
TaiI	ACGT	1 cut(s)	405
TaqI	TCGA	5 cut(s)	66, 137, 313, 752, 960
TasI	AATT	3 cut(s)	133, 564, 630
TatI	WGTACW	2 cut(s)	273, 792
TauI	GCSGC	1 cut(s)	458
TfiI	GAWTC	3 cut(s)	749, 757, 964
Tru1I	TTAA	4 cut(s)	399, 479, 735, 786
Tru9I	TTAA	4 cut(s)	399, 479, 735, 786
TscAI	CASTG	5 cut(s)	97, 109, 432, 448, 591
TseFI	GTSAC	4 cut(s)	178, 248, 411, 449
TseI	GCWGC	3 cut(s)	260, 578, 581
Tsp45I	GTSAC	4 cut(s)	178, 248, 411, 449
TspDTI	ATGAA	1 cut(s)	879
TspGWI	ACGGA	2 cut(s)	398, 761
TspRI	CASTG	5 cut(s)	97, 109, 432, 448, 591
Van91I	CCANNNNNTGG	1 cut(s)	895
Vha464I	CTTAAG	1 cut(s)	785
VpaK11BI	GGWCC	1 cut(s)	647
XapI	RAATTY	2 cut(s)	133, 630
XceI	RCATGY	2 cut(s)	563, 661
XcmI	CCANNNNNNNNNTGG	1 cut(s)	202
XhoI	CTCGAG	1 cut(s)	959
XmnI	GAANNNNTTC	1 cut(s)	946
XspI	CTAG	2 cut(s)	162, 740
ZrmI	AGTACT	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.