Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001987

Physical Location & Seq

Genomic Coordinates Forward (+)

32480840 .. 32483742

Gene Structure 2903 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56767

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGCTCTAACAAATGGGTTGGAAATTCCTAAAGAAGTGCTAGAAGCAGAAATCAAATCCTTTTTTGACTCGGCTCCTCCTTTAAAGAACAGAGATGATGTCAGTGAAAAACTTGAGGCATTTGTTAAAAAGAATTCGCAGCCTTCTGGCACGAGGGTGGTTTGTGTAACCTCTGGTGGTACCACGGTTCCTCTGGAGCAACGATGTGTTCGCTACATTGACAACTTCAGCTCAGGTCACAGAGGAGCAGCTTCCACAGAGTACTTTTTGTCAGTTTTGAAGGCAGGCTATGCTGTTATCTTTCTTTATCGGAGGGGAACTTGCCAGCCATATTGCAGATCTCTTCCCGATGATCCGTTACTTAAATGTCTGGAAATTGTGGACGAGTCAAACATTCAAGTACACCAGTCCCATTCACAAGCAGTGGGGAGTGCTATCACGAAGACTCATGCTGCAGTGGAAGACGGCCTCTTGCTGAAACTTCCCTTTACAATAATATTTGAGTATCTCCAGTTGTTGCAGATGGTTGCGTTTACAATGCGAAGGATTGGACCACATGCCATGCTATATCTTGCAGTAGCAGTATCTGACTTCTACGTCCCTTGGAAGAGCATGGCAGAGCACAAAATTCAGTCAGGGTCTGGTCCATTGGATATGCGACTTGTTCAGGTGCCAAAGATGCTCTTAGTGCTGAGGAAAGACTGGGCCCCCATGGCCTTCTGCATATCATTCAAGCTAGAAACAGATTCAAAGATCCTGTTAGAGAAGGCTGATATGGCTCTTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004632 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009987 GO:0015936 GO:0015937 GO:0016874 GO:0016879 GO:0016881 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

DFP

Protein Analysis

262

Amino Acids

29.27

Weight (kDa)

8.16

Isoelectric Point (pI)

37.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12350 AT1G12350 AT5G02080 AT5G02080 AT5G02080 AT5G02080 AT5G02080 AT5G02080 AT5G02080
fragaria_vesca	FvH4_5g38402 FvH4_5g38402 FvH4_5g38420 FvH4_5g38420 FvH4_7g08221 FvH4_7g08221
malus_domestica	MD08G1174000.v1.1 MD15G1360400.v1.1
prunus_persica	Prupe.1G507900_v2.0.a1 Prupe.1G507900_v2.0.a1 Prupe.1G507900_v2.0.a1 Prupe.1G507900_v2.0.a1
pyrus_communis	pycom08g14920 pycom15g32230
rosa_chinensis	RchiOBHm_Chr1g0340891 RchiOBHm_Chr1g0340911 RchiOBHm_Chr7g0240421
rosa_laevigata	RLG00000000678 RLG00000029049
rosa_multiflora	Rmu_sc0001211.1_g000112 Rmu_sc0002676.1_g000001
rosa_roxburghii	Rroxscaffold_3G00220100
rosa_rugosa	Rorug01G0160900.1 Rorug07G0335900
rosa_samantha	Rh1AG175900 Rh1BG143900 Rh1CG163800 Rh1DG175600 Rh7AG490200 Rh7BG463100 Rh7CG506600 Rh7DG474200
rosa_wichuraiana	Rw0G004950 Rw1G014660 Rw7G041000 Rw7G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	596
Acc65I	GGTACC	1 cut(s)	179
AccB1I	GGYRCC	2 cut(s)	179, 670
AclWI	GGATC	2 cut(s)	347, 748
AcsI	RAATTY	3 cut(s)	24, 133, 627
AcuI	CTGAAG	1 cut(s)	211
AfaI	GTAC	3 cut(s)	181, 263, 402
AgsI	TTSAA	4 cut(s)	280, 398, 733, 750
AleI	CACNNNNGTG	1 cut(s)	155
AluBI	AGCT	3 cut(s)	231, 251, 736
AluI	AGCT	3 cut(s)	231, 251, 736
Alw21I	GWGCWC	1 cut(s)	624
AlwI	GGATC	2 cut(s)	347, 748
AlwNI	CAGNNNCTG	2 cut(s)	587, 641
AoxI	GGCC	3 cut(s)	466, 705, 714
ApaI	GGGCCC	1 cut(s)	709
ApeKI	GCWGC	3 cut(s)	139, 248, 452
ApoI	RAATTY	3 cut(s)	24, 133, 627
Asp718I	GGTACC	1 cut(s)	179
AspS9I	GGNCC	4 cut(s)	551, 644, 705, 706
AvaII	GGWCC	2 cut(s)	551, 644
BaeGI	GKGCMC	1 cut(s)	709
BaeI	ACNNNNGTAYC	2 cut(s)	171, 204
BanI	GGYRCC	2 cut(s)	179, 670
BanII	GRGCYC	1 cut(s)	709
BauI	CACGAG	1 cut(s)	151
BbsI	GAAGAC	2 cut(s)	449, 468
Bbv12I	GWGCWC	1 cut(s)	624
BbvCI	CCTCAGC	1 cut(s)	692
BbvI	GCAGC	3 cut(s)	151, 260, 439
BccI	CCATC	1 cut(s)	517
BceAI	ACGGC	1 cut(s)	481
BfaI	CTAG	2 cut(s)	41, 737
BfmI	CTRYAG	1 cut(s)	453
BglI	GCCNNNNNGGC	1 cut(s)	713
BglII	AGATCT	1 cut(s)	338
BisI	GCNGC	3 cut(s)	140, 249, 453
BlsI	GCNGC	3 cut(s)	141, 250, 454
BmcAI	AGTACT	1 cut(s)	263
Bme18I	GGWCC	2 cut(s)	551, 644
BmgT120I	GGNCC	4 cut(s)	551, 644, 705, 706
BmiI	GGNNCC	6 cut(s)	75, 181, 189, 672, 707, 708
BmrI	ACTGGG	1 cut(s)	712
BmsI	GCATC	1 cut(s)	669
BmuI	ACTGGG	1 cut(s)	712
BpiI	GAAGAC	2 cut(s)	449, 468
BpmI	CTGGAG	2 cut(s)	215, 494
Bpu10I	CCTNAGC	2 cut(s)	232, 692
BpuEI	CTTGAG	1 cut(s)	134
BsaJI	CCNNGG	3 cut(s)	183, 602, 711
Bse1I	ACTGG	3 cut(s)	406, 511, 707
BseDI	CCNNGG	3 cut(s)	183, 602, 711
BseMII	CTCAG	2 cut(s)	246, 683
BseNI	ACTGG	3 cut(s)	406, 511, 707
BseRI	GAGGAG	2 cut(s)	66, 258
BseSI	GKGCMC	1 cut(s)	709
BseXI	GCAGC	3 cut(s)	151, 260, 439
BshFI	GGCC	3 cut(s)	468, 707, 716
BshNI	GGYRCC	2 cut(s)	179, 670
BsiHKAI	GWGCWC	1 cut(s)	624
BslFI	GGGAC	2 cut(s)	394, 584
BsmFI	GGGAC	2 cut(s)	394, 584
BsnI	GGCC	3 cut(s)	468, 707, 716
Bsp120I	GGGCCC	1 cut(s)	705
Bsp1286I	GDGCHC	2 cut(s)	624, 709
Bsp143I	GATC	3 cut(s)	338, 352, 753
Bsp19I	CCATGG	1 cut(s)	711
BspANI	GGCC	3 cut(s)	468, 707, 716
BspCNI	CTCAG	2 cut(s)	245, 684
BspLI	GGNNCC	6 cut(s)	75, 181, 189, 672, 707, 708
BspMAI	CTGCAG	1 cut(s)	457
BspPI	GGATC	2 cut(s)	347, 748
BspQI	GCTCTTC	1 cut(s)	602
BspT107I	GGYRCC	2 cut(s)	179, 670
BsrI	ACTGG	3 cut(s)	406, 511, 707
BssECI	CCNNGG	3 cut(s)	183, 602, 711
BssMI	GATC	3 cut(s)	338, 352, 753
BssSI	CACGAG	1 cut(s)	151
BssT1I	CCWWGG	2 cut(s)	602, 711
Bst2BI	CACGAG	1 cut(s)	151
Bst4CI	ACNGT	1 cut(s)	187
Bst6I	CTCTTC	2 cut(s)	348, 602
BstAPI	GCANNNNNTGC	1 cut(s)	290
BstC8I	GCNNGC	2 cut(s)	286, 326
BstDEI	CTNAG	4 cut(s)	232, 685, 692, 782
BstDSI	CCRYGG	2 cut(s)	183, 711
BstKTI	GATC	3 cut(s)	341, 355, 756
BstMBI	GATC	3 cut(s)	338, 352, 753
BstMWI	GCNNNNNNNGC	5 cut(s)	290, 679, 688, 713, 776
BstNSI	RCATGY	1 cut(s)	560
BstSFI	CTRYAG	1 cut(s)	453
BstSLI	GKGCMC	1 cut(s)	709
BstV1I	GCAGC	3 cut(s)	151, 260, 439
BstV2I	GAAGAC	2 cut(s)	449, 468
BstX2I	RGATCY	2 cut(s)	338, 753
BstYI	RGATCY	2 cut(s)	338, 753
BsuRI	GGCC	3 cut(s)	468, 707, 716
BtgI	CCRYGG	2 cut(s)	183, 711
BtsI	GCAGTG	2 cut(s)	429, 462
BtsIMutI	CAGTG	3 cut(s)	109, 429, 462
Cac8I	GCNNGC	2 cut(s)	286, 326
CaiI	CAGNNNCTG	2 cut(s)	587, 641
Cfr13I	GGNCC	4 cut(s)	551, 644, 705, 706
Csp6I	GTAC	3 cut(s)	180, 262, 401
CviAII	CATG	5 cut(s)	449, 557, 562, 613, 712
CviQI	GTAC	3 cut(s)	180, 262, 401
DdeI	CTNAG	4 cut(s)	232, 685, 692, 782
DpnI	GATC	3 cut(s)	340, 354, 755
DpnII	GATC	3 cut(s)	338, 352, 753
DraI	TTTAAA	1 cut(s)	84
DrdI	GACNNNNNNGTC	1 cut(s)	596
DseDI	GACNNNNNNGTC	1 cut(s)	596
Eam1104I	CTCTTC	2 cut(s)	348, 602
EarI	CTCTTC	2 cut(s)	348, 602
Eco130I	CCWWGG	2 cut(s)	602, 711
Eco24I	GRGCYC	1 cut(s)	709
Eco47I	GGWCC	2 cut(s)	551, 644
Eco57I	CTGAAG	1 cut(s)	211
EcoO109I	RGGNCCY	1 cut(s)	706
EcoRI	GAATTC	1 cut(s)	133
EcoT14I	CCWWGG	2 cut(s)	602, 711
EcoT38I	GRGCYC	1 cut(s)	709
ErhI	CCWWGG	2 cut(s)	602, 711
FaeI	CATG	5 cut(s)	452, 560, 565, 616, 715
FalI	AAGNNNNNCTT	2 cut(s)	668, 700
FaqI	GGGAC	2 cut(s)	394, 584
FatI	CATG	5 cut(s)	448, 556, 561, 612, 711
Fnu4HI	GCNGC	3 cut(s)	140, 249, 453
FriOI	GRGCYC	1 cut(s)	709
Fsp4HI	GCNGC	3 cut(s)	140, 249, 453
FspBI	CTAG	2 cut(s)	41, 737
GluI	GCNGC	3 cut(s)	140, 249, 453
GsuI	CTGGAG	2 cut(s)	215, 494
HaeIII	GGCC	3 cut(s)	468, 707, 716
Hin1II	CATG	5 cut(s)	452, 560, 565, 616, 715
HinfI	GANTC	4 cut(s)	68, 386, 445, 746
Hpy166II	GTNNAC	3 cut(s)	382, 403, 534
Hpy188I	TCNGA	2 cut(s)	312, 589
Hpy188III	TCNNGA	4 cut(s)	194, 347, 371, 439
Hpy8I	GTNNAC	3 cut(s)	382, 403, 534
HpyAV	CCTTC	5 cut(s)	153, 274, 537, 727, 760
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4IV	ACGT	1 cut(s)	597
HpyCH4V	TGCA	5 cut(s)	336, 455, 520, 575, 723
HpyF10VI	GCNNNNNNNGC	5 cut(s)	290, 679, 688, 713, 776
HpyF3I	CTNAG	4 cut(s)	232, 685, 692, 782
HpySE526I	ACGT	1 cut(s)	597
Hsp92II	CATG	5 cut(s)	452, 560, 565, 616, 715
KpnI	GGTACC	1 cut(s)	183
Kzo9I	GATC	3 cut(s)	338, 352, 753
LguI	GCTCTTC	1 cut(s)	602
LmnI	GCTCC	3 cut(s)	79, 196, 245
Lsp1109I	GCAGC	3 cut(s)	151, 260, 439
LweI	GCATC	1 cut(s)	669
MaeI	CTAG	2 cut(s)	41, 737
MaeII	ACGT	1 cut(s)	597
MaeIII	GTNAC	3 cut(s)	166, 236, 357
MalI	GATC	3 cut(s)	340, 354, 755
MboI	GATC	3 cut(s)	338, 352, 753
MboII	GAAGA	4 cut(s)	335, 454, 473, 619
MflI	RGATCY	2 cut(s)	338, 753
MhlI	GDGCHC	2 cut(s)	624, 709
MluCI	AATT	4 cut(s)	24, 133, 375, 627
MlyI	GAGTC	3 cut(s)	62, 395, 439
MnlI	CCTC	9 cut(s)	87, 109, 147, 181, 201, 236, 306, 479, 687
MseI	TTAA	3 cut(s)	83, 126, 363
MslI	CAYNNNNRTG	1 cut(s)	155
MwoI	GCNNNNNNNGC	5 cut(s)	290, 679, 688, 713, 776
NcoI	CCATGG	1 cut(s)	711
NdeII	GATC	3 cut(s)	338, 352, 753
NlaIII	CATG	5 cut(s)	452, 560, 565, 616, 715
NlaIV	GGNNCC	6 cut(s)	75, 181, 189, 672, 707, 708
NmeAIII	GCCGAG	1 cut(s)	50
NmuCI	GTSAC	1 cut(s)	236
NspI	RCATGY	1 cut(s)	560
OliI	CACNNNNGTG	1 cut(s)	155
PciSI	GCTCTTC	1 cut(s)	602
PfeI	GAWTC	1 cut(s)	746
PkrI	GCNGC	3 cut(s)	141, 250, 454
PleI	GAGTC	3 cut(s)	62, 394, 439
PpsI	GAGTC	3 cut(s)	62, 394, 439
PspN4I	GGNNCC	6 cut(s)	75, 181, 189, 672, 707, 708
PspOMI	GGGCCC	1 cut(s)	705
PspPI	GGNCC	4 cut(s)	551, 644, 705, 706
PstI	CTGCAG	1 cut(s)	457
PstNI	CAGNNNCTG	2 cut(s)	587, 641
PsuI	RGATCY	2 cut(s)	338, 753
RsaI	GTAC	3 cut(s)	181, 263, 402
RsaNI	GTAC	3 cut(s)	180, 262, 401
RseI	CAYNNNNRTG	1 cut(s)	155
SapI	GCTCTTC	1 cut(s)	602
SaqAI	TTAA	3 cut(s)	83, 126, 363
SatI	GCNGC	3 cut(s)	140, 249, 453
Sau3AI	GATC	3 cut(s)	338, 352, 753
Sau96I	GGNCC	4 cut(s)	551, 644, 705, 706
ScaI	AGTACT	1 cut(s)	263
SchI	GAGTC	3 cut(s)	62, 395, 439
SduI	GDGCHC	2 cut(s)	624, 709
SetI	ASST	7 cut(s)	173, 233, 238, 253, 600, 672, 738
SfaNI	GCATC	1 cut(s)	669
SfcI	CTRYAG	1 cut(s)	453
SfiI	GGCCNNNNNGGCC	1 cut(s)	713
SinI	GGWCC	2 cut(s)	551, 644
SmiMI	CAYNNNNRTG	1 cut(s)	155
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
Sse9I	AATT	4 cut(s)	24, 133, 375, 627
SspI	AATATT	1 cut(s)	498
SspMI	CTAG	2 cut(s)	41, 737
StyI	CCWWGG	2 cut(s)	602, 711
TaaI	ACNGT	1 cut(s)	187
TaiI	ACGT	1 cut(s)	600
TasI	AATT	4 cut(s)	24, 133, 375, 627
TatI	WGTACW	2 cut(s)	261, 400
TfiI	GAWTC	1 cut(s)	746
Tru1I	TTAA	3 cut(s)	83, 126, 363
Tru9I	TTAA	3 cut(s)	83, 126, 363
TscAI	CASTG	3 cut(s)	109, 429, 462
TseFI	GTSAC	1 cut(s)	236
TseI	GCWGC	3 cut(s)	139, 248, 452
Tsp45I	GTSAC	1 cut(s)	236
TspGWI	ACGGA	1 cut(s)	345
TspRI	CASTG	3 cut(s)	109, 429, 462
VpaK11BI	GGWCC	2 cut(s)	551, 644
XapI	RAATTY	3 cut(s)	24, 133, 627
XceI	RCATGY	1 cut(s)	560
XcmI	CCANNNNNNNNNTGG	1 cut(s)	190
XspI	CTAG	2 cut(s)	41, 737
ZrmI	AGTACT	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.