Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001987

Physical Location & Seq

Genomic Coordinates Forward (+)

41898429 .. 41903016

Gene Structure 4588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G507900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGTCTCTAACAAATGGGTTGGAAATTCCAAAAGAAACACTGGATGCAGAAATCCAAGCCTTTTTTGACTCAGCTCCTCCTTTGAAGAACAGAGTTGATATCAGTGAAAAACTCGAGGAATTTGTGAAGAAGAATTCATTACCTTCCGGAAGTGGAGGAGTTAGGAAGGTTGTCTGTGTGACATCGGGGGGTACCACAGTTCCTCTAGAGCAACGATGTGTTCGCTACATCGACAACTTCAGCTCAGGTTATAGAGGAGCAGCATCCACAGAGTACTTTTTGAAGGCAGGTTATGCTGTTATCTTTCTTTGTCGGAGGGGAACTTGCCAGCCATATTGCAGATCTCTTCCCGATGACCCCTTGCTTGAATGTTTTGAATATAGGGATGAGTCAAATATTAAAGTGTCCCAGCCACATTCTGAAGCAGTGAGGAACGCCATCACTAAGAATCGTGCTGCAGTAACAGGAAGCCTCTTGTTGAAACTTCCCTTTACAACCATATTTGAGTATCTTCAGATGTTGCAGATGATTGCTTTATCAATGAGAAGTCTTGGACCACATGCAATGCTTTATCTTGCAGCGGCAGTGTCTGACTTTTATGTTCCTTGGAAGAGCATGGCTGAACACAAAATTCAGTCAGGGGCTGGTCCGTTGGACATGCGACTTGTTCAGGTGCCAAAGATGCTCTTAGTGCTAAGGCAAGACTGGGCACCAAAGGCCTTCTGTATATCTTTCAAGCTAGAGACGGATTCAAAGATTCTTTTAGAGAAGGCTGATATGGCTCTCAAGAAGTACAAGATGCATATGGTTGTAGCGAATGAACTTTCGACCCGCAAGGAAGAGGTTGTAGTTGTCAGAAGTAACGAAAAAGTTTCAGTTCATCGAAACAATTCTCTTGGTGATAATGATGTGGAGAGTCCACTTATCGAACTTATTGTGGAGAGGCATTCAGCGTATGTCAACAATTCTGATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004632 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009987 GO:0015936 GO:0015937 GO:0016874 GO:0016879 GO:0016881 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

DFP

Protein Analysis

326

Amino Acids

36.41

Weight (kDa)

8.07

Isoelectric Point (pI)

41.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12350 AT1G12350 AT5G02080 AT5G02080 AT5G02080 AT5G02080 AT5G02080 AT5G02080 AT5G02080
fragaria_vesca	FvH4_5g38402 FvH4_5g38402 FvH4_5g38420 FvH4_5g38420 FvH4_7g08221 FvH4_7g08221
malus_domestica	MD08G1174000.v1.1 MD15G1360400.v1.1
prunus_persica	Prupe.1G507900_v2.0.a1 Prupe.1G507900_v2.0.a1 Prupe.1G507900_v2.0.a1 Prupe.1G507900_v2.0.a1
pyrus_communis	pycom08g14920 pycom15g32230
rosa_chinensis	RchiOBHm_Chr1g0340891 RchiOBHm_Chr1g0340911 RchiOBHm_Chr7g0240421
rosa_laevigata	RLG00000000678 RLG00000029049
rosa_multiflora	Rmu_sc0001211.1_g000112 Rmu_sc0002676.1_g000001
rosa_roxburghii	Rroxscaffold_3G00220100
rosa_rugosa	Rorug01G0160900.1 Rorug07G0335900
rosa_samantha	Rh1AG175900 Rh1BG143900 Rh1CG163800 Rh1DG175600 Rh7AG490200 Rh7BG463100 Rh7CG506600 Rh7DG474200
rosa_wichuraiana	Rw0G004950 Rw1G014660 Rw7G041000 Rw7G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	278
Acc65I	GGTACC	1 cut(s)	191
AccB1I	GGYRCC	3 cut(s)	191, 673, 709
AccIII	TCCGGA	1 cut(s)	146
AciI	CCGC	2 cut(s)	581, 832
AcsI	RAATTY	4 cut(s)	24, 119, 133, 630
AcuI	CTGAAG	3 cut(s)	223, 441, 497
AfaI	GTAC	3 cut(s)	193, 275, 794
AgsI	TTSAA	7 cut(s)	85, 283, 368, 377, 481, 736, 753
AluBI	AGCT	3 cut(s)	74, 243, 739
AluI	AGCT	3 cut(s)	74, 243, 739
Alw26I	GTCTC	2 cut(s)	9, 737
AlwNI	CAGNNNCTG	2 cut(s)	590, 644
Ama87I	CYCGRG	1 cut(s)	113
Aor13HI	TCCGGA	1 cut(s)	146
AoxI	GGCC	1 cut(s)	717
ApeKI	GCWGC	3 cut(s)	260, 455, 578
ApoI	RAATTY	4 cut(s)	24, 119, 133, 630
Asp700I	GAANNNNTTC	1 cut(s)	889
Asp718I	GGTACC	1 cut(s)	191
AspS9I	GGNCC	2 cut(s)	554, 647
AsuHPI	GGTGA	1 cut(s)	911
AvaI	CYCGRG	1 cut(s)	113
AvaII	GGWCC	2 cut(s)	554, 647
BaeGI	GKGCMC	1 cut(s)	712
BaeI	ACNNNNGTAYC	2 cut(s)	183, 216
BanI	GGYRCC	3 cut(s)	191, 673, 709
BbvI	GCAGC	3 cut(s)	272, 442, 590
BccI	CCATC	1 cut(s)	446
BcoDI	GTCTC	2 cut(s)	9, 737
BfaI	CTAG	2 cut(s)	206, 740
BfmI	CTRYAG	1 cut(s)	456
BfuAI	ACCTGC	1 cut(s)	278
BglII	AGATCT	1 cut(s)	341
BisI	GCNGC	4 cut(s)	261, 456, 579, 582
BlsI	GCNGC	4 cut(s)	262, 457, 580, 583
BmcAI	AGTACT	1 cut(s)	275
Bme18I	GGWCC	2 cut(s)	554, 647
BmeT110I	CYCGRG	1 cut(s)	113
BmgT120I	GGNCC	2 cut(s)	554, 647
BmiI	GGNNCC	3 cut(s)	193, 675, 711
BmrI	ACTGGG	1 cut(s)	715
BmsI	GCATC	4 cut(s)	34, 272, 672, 789
BmuI	ACTGGG	1 cut(s)	715
Bpu10I	CCTNAGC	2 cut(s)	244, 695
BpuEI	CTTGAG	1 cut(s)	770
BsaJI	CCNNGG	1 cut(s)	605
BsaWI	WCCGGW	1 cut(s)	146
Bse1I	ACTGG	2 cut(s)	45, 710
Bse3DI	GCAATG	1 cut(s)	570
BseAI	TCCGGA	1 cut(s)	146
BseDI	CCNNGG	1 cut(s)	605
BseGI	GGATG	3 cut(s)	49, 263, 391
BseMI	GCAATG	1 cut(s)	570
BseMII	CTCAG	2 cut(s)	84, 258
BseNI	ACTGG	2 cut(s)	45, 710
BseRI	GAGGAG	3 cut(s)	66, 171, 270
BseSI	GKGCMC	1 cut(s)	712
BseXI	GCAGC	3 cut(s)	272, 442, 590
BseYI	CCCAGC	1 cut(s)	408
BshFI	GGCC	1 cut(s)	719
BshNI	GGYRCC	3 cut(s)	191, 673, 709
BsiHKCI	CYCGRG	1 cut(s)	113
BsiSI	CCGG	1 cut(s)	147
BslFI	GGGAC	1 cut(s)	391
BsmAI	GTCTC	2 cut(s)	9, 737
BsmBI	CGTCTC	1 cut(s)	737
BsmFI	GGGAC	1 cut(s)	391
BsmI	GAATGC	1 cut(s)	946
BsnI	GGCC	1 cut(s)	719
BsoBI	CYCGRG	1 cut(s)	113
Bsp1286I	GDGCHC	1 cut(s)	712
Bsp13I	TCCGGA	1 cut(s)	146
Bsp143I	GATC	1 cut(s)	341
BspACI	CCGC	2 cut(s)	581, 832
BspANI	GGCC	1 cut(s)	719
BspCNI	CTCAG	2 cut(s)	83, 257
BspEI	TCCGGA	1 cut(s)	146
BspLI	GGNNCC	3 cut(s)	193, 675, 711
BspMAI	CTGCAG	1 cut(s)	460
BspMI	ACCTGC	1 cut(s)	278
BspQI	GCTCTTC	1 cut(s)	605
BspT107I	GGYRCC	3 cut(s)	191, 673, 709
BsrDI	GCAATG	1 cut(s)	570
BsrI	ACTGG	2 cut(s)	45, 710
BssECI	CCNNGG	1 cut(s)	605
BssMI	GATC	1 cut(s)	341
BssT1I	CCWWGG	1 cut(s)	605
Bst4CI	ACNGT	1 cut(s)	199
Bst6I	CTCTTC	3 cut(s)	351, 605, 834
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstC8I	GCNNGC	1 cut(s)	329
BstDEI	CTNAG	5 cut(s)	70, 244, 444, 688, 695
BstF5I	GGATG	3 cut(s)	49, 263, 391
BstKTI	GATC	1 cut(s)	344
BstMAI	GTCTC	2 cut(s)	9, 737
BstMBI	GATC	1 cut(s)	341
BstMWI	GCNNNNNNNGC	5 cut(s)	293, 682, 691, 716, 779
BstNSI	RCATGY	2 cut(s)	563, 661
BstSFI	CTRYAG	1 cut(s)	456
BstSLI	GKGCMC	1 cut(s)	712
BstV1I	GCAGC	3 cut(s)	272, 442, 590
BstX2I	RGATCY	1 cut(s)	341
BstYI	RGATCY	1 cut(s)	341
BsuRI	GGCC	1 cut(s)	719
BtsCI	GGATG	3 cut(s)	49, 263, 391
BtsI	GCAGTG	2 cut(s)	432, 591
BtsIMutI	CAGTG	4 cut(s)	38, 109, 432, 591
BveI	ACCTGC	1 cut(s)	278
Cac8I	GCNNGC	1 cut(s)	329
CaiI	CAGNNNCTG	2 cut(s)	590, 644
Cfr13I	GGNCC	2 cut(s)	554, 647
Csp6I	GTAC	3 cut(s)	192, 274, 793
CviAII	CATG	3 cut(s)	560, 616, 658
CviQI	GTAC	3 cut(s)	192, 274, 793
DdeI	CTNAG	5 cut(s)	70, 244, 444, 688, 695
DpnI	GATC	1 cut(s)	343
DpnII	GATC	1 cut(s)	341
Eam1104I	CTCTTC	3 cut(s)	351, 605, 834
EarI	CTCTTC	3 cut(s)	351, 605, 834
Eco130I	CCWWGG	1 cut(s)	605
Eco147I	AGGCCT	1 cut(s)	719
Eco32I	GATATC	1 cut(s)	100
Eco47I	GGWCC	2 cut(s)	554, 647
Eco57I	CTGAAG	3 cut(s)	223, 441, 497
Eco88I	CYCGRG	1 cut(s)	113
EcoRI	GAATTC	1 cut(s)	133
EcoRV	GATATC	1 cut(s)	100
EcoT14I	CCWWGG	1 cut(s)	605
EcoT22I	ATGCAT	1 cut(s)	804
ErhI	CCWWGG	1 cut(s)	605
Esp3I	CGTCTC	1 cut(s)	737
FaeI	CATG	3 cut(s)	563, 619, 661
FalI	AAGNNNNNCTT	2 cut(s)	671, 703
FaqI	GGGAC	1 cut(s)	391
FatI	CATG	3 cut(s)	559, 615, 657
FauI	CCCGC	1 cut(s)	839
FauNDI	CATATG	1 cut(s)	804
Fnu4HI	GCNGC	4 cut(s)	261, 456, 579, 582
FokI	GGATG	3 cut(s)	56, 250, 398
Fsp4HI	GCNGC	4 cut(s)	261, 456, 579, 582
FspBI	CTAG	2 cut(s)	206, 740
GluI	GCNGC	4 cut(s)	261, 456, 579, 582
GsaI	CCCAGC	1 cut(s)	412
HaeIII	GGCC	1 cut(s)	719
HapII	CCGG	1 cut(s)	147
Hin1II	CATG	3 cut(s)	563, 619, 661
HincII	GTYRAC	1 cut(s)	961
HindII	GTYRAC	1 cut(s)	961
HinfI	GANTC	6 cut(s)	68, 389, 448, 749, 757, 916
HpaII	CCGG	1 cut(s)	147
HphI	GGTGA	1 cut(s)	911
Hpy166II	GTNNAC	2 cut(s)	920, 961
Hpy188I	TCNGA	6 cut(s)	315, 421, 516, 592, 857, 970
Hpy188III	TCNNGA	4 cut(s)	147, 206, 350, 787
Hpy8I	GTNNAC	2 cut(s)	920, 961
HpyAV	CCTTC	5 cut(s)	153, 160, 277, 730, 763
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4V	TGCA	7 cut(s)	47, 339, 458, 523, 563, 578, 802
HpyF10VI	GCNNNNNNNGC	5 cut(s)	293, 682, 691, 716, 779
HpyF3I	CTNAG	5 cut(s)	70, 244, 444, 688, 695
Hsp92II	CATG	3 cut(s)	563, 619, 661
Kpn2I	TCCGGA	1 cut(s)	146
KpnI	GGTACC	1 cut(s)	195
Kzo9I	GATC	1 cut(s)	341
LguI	GCTCTTC	1 cut(s)	605
LmnI	GCTCC	2 cut(s)	79, 257
Lsp1109I	GCAGC	3 cut(s)	272, 442, 590
LweI	GCATC	4 cut(s)	34, 272, 672, 789
MaeI	CTAG	2 cut(s)	206, 740
MaeIII	GTNAC	3 cut(s)	178, 460, 860
MalI	GATC	1 cut(s)	343
MboI	GATC	1 cut(s)	341
MboII	GAAGA	7 cut(s)	97, 139, 142, 338, 503, 622, 851
MflI	RGATCY	1 cut(s)	341
MhlI	GDGCHC	1 cut(s)	712
MluCI	AATT	6 cut(s)	24, 119, 133, 630, 889, 964
MlyI	GAGTC	3 cut(s)	62, 398, 925
MmeI	TCCRAC	2 cut(s)	293, 633
Mph1103I	ATGCAT	1 cut(s)	804
MroI	TCCGGA	1 cut(s)	146
MroXI	GAANNNNTTC	1 cut(s)	889
MseI	TTAA	1 cut(s)	399
MspA1I	CMGCKG	1 cut(s)	581
MspI	CCGG	1 cut(s)	147
Mva1269I	GAATGC	1 cut(s)	946
MwoI	GCNNNNNNNGC	5 cut(s)	293, 682, 691, 716, 779
NdeI	CATATG	1 cut(s)	804
NdeII	GATC	1 cut(s)	341
NlaIII	CATG	3 cut(s)	563, 619, 661
NlaIV	GGNNCC	3 cut(s)	193, 675, 711
NmuCI	GTSAC	1 cut(s)	178
NsiI	ATGCAT	1 cut(s)	804
NspI	RCATGY	2 cut(s)	563, 661
PaeR7I	CTCGAG	1 cut(s)	113
PceI	AGGCCT	1 cut(s)	719
PciSI	GCTCTTC	1 cut(s)	605
PctI	GAATGC	1 cut(s)	946
PdmI	GAANNNNTTC	1 cut(s)	889
PfeI	GAWTC	3 cut(s)	448, 749, 757
PkrI	GCNGC	4 cut(s)	262, 457, 580, 583
PleI	GAGTC	3 cut(s)	62, 397, 924
PpsI	GAGTC	3 cut(s)	62, 397, 924
PspFI	CCCAGC	1 cut(s)	408
PspN4I	GGNNCC	3 cut(s)	193, 675, 711
PspPI	GGNCC	2 cut(s)	554, 647
PspXI	VCTCGAGB	1 cut(s)	113
PstI	CTGCAG	1 cut(s)	460
PstNI	CAGNNNCTG	2 cut(s)	590, 644
PsuI	RGATCY	1 cut(s)	341
RsaI	GTAC	3 cut(s)	193, 275, 794
RsaNI	GTAC	3 cut(s)	192, 274, 793
SapI	GCTCTTC	1 cut(s)	605
SaqAI	TTAA	1 cut(s)	399
SatI	GCNGC	4 cut(s)	261, 456, 579, 582
Sau3AI	GATC	1 cut(s)	341
Sau96I	GGNCC	2 cut(s)	554, 647
ScaI	AGTACT	1 cut(s)	275
SchI	GAGTC	3 cut(s)	62, 398, 925
SduI	GDGCHC	1 cut(s)	712
SetI	ASST	9 cut(s)	76, 145, 171, 245, 250, 292, 675, 741, 846
SfaNI	GCATC	4 cut(s)	34, 272, 672, 789
SfcI	CTRYAG	1 cut(s)	456
Sfr274I	CTCGAG	1 cut(s)	113
SinI	GGWCC	2 cut(s)	554, 647
SlaI	CTCGAG	1 cut(s)	113
SmlI	CTYRAG	2 cut(s)	113, 785
SmoI	CTYRAG	2 cut(s)	113, 785
Sse9I	AATT	6 cut(s)	24, 119, 133, 630, 889, 964
SseBI	AGGCCT	1 cut(s)	719
SsiI	CCGC	2 cut(s)	581, 832
SspI	AATATT	1 cut(s)	397
SspMI	CTAG	2 cut(s)	206, 740
StuI	AGGCCT	1 cut(s)	719
StyI	CCWWGG	1 cut(s)	605
TaaI	ACNGT	1 cut(s)	199
TaqI	TCGA	5 cut(s)	114, 231, 827, 883, 927
TasI	AATT	6 cut(s)	24, 119, 133, 630, 889, 964
TatI	WGTACW	2 cut(s)	273, 792
TauI	GCSGC	1 cut(s)	584
TfiI	GAWTC	3 cut(s)	448, 749, 757
Tru1I	TTAA	1 cut(s)	399
Tru9I	TTAA	1 cut(s)	399
TscAI	CASTG	4 cut(s)	45, 109, 432, 591
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	3 cut(s)	260, 455, 578
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	3 cut(s)	126, 834, 869
TspGWI	ACGGA	2 cut(s)	639, 761
TspRI	CASTG	4 cut(s)	45, 109, 432, 591
VpaK11BI	GGWCC	2 cut(s)	554, 647
XapI	RAATTY	4 cut(s)	24, 119, 133, 630
XbaI	TCTAGA	1 cut(s)	205
XceI	RCATGY	2 cut(s)	563, 661
XhoI	CTCGAG	1 cut(s)	113
XmnI	GAANNNNTTC	1 cut(s)	889
XspI	CTAG	2 cut(s)	206, 740
ZrmI	AGTACT	1 cut(s)	275
Zsp2I	ATGCAT	1 cut(s)	804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.