Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001987

Physical Location & Seq

Genomic Coordinates Forward (+)

3720810 .. 3723924

Gene Structure 3115 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000678

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGCTCTAACAGATGGGTTGGAAATTCCTAAACAAGTGCTGGATGCAGAAATCAAATCCTTTTATGACTCAGCTCCTCCTTTAAAGAACAGAGATGATGTCAGTGAAAAACTTGAGGCATTTGTTAAAAAGAATTCGCAACCTTCTGGTGGAGGAGCTAGGAGGGTGGTTTGTGTAACCTCTGGTGGTACCACGGTTCCTCTGGAGCAACGATGTGTTCGCTACATTGACAACTTCAGCTCAGGTCACAGAGGAGCAGCTTCCACAGAGTACTTTTTGAAGGCAGGCTATGCTGTTATCTTTCTTTATCGGAGGGGAACCTGCCAACCATTTTGCAGATCTCTTCCCGATGATCCGTTGCTTGAATGTCTGGAAATTTTGGACGAGTCAAACATTCAAGTACACCAGTCCCATTCACAAGCAGTGAGGAGTGCTATCACTAAGACTCATGCTGCAGTAGCAGACGGCCTCTTGCTGAAACTTCCCTTCACAACAATATTTGAGTATCTCCAGATGTTGCAGATGGTTGCGTTTACAATACGAAGTATTGGACCACATGCCATGCTATATCTTGCAGCAGCAGTATCTGACTTTTATGTCCCTTGGAAGAGCATGGCAGAACACAAAATTCAGTCAGGCTCTGGTCCATTGGATATGCGACTTGTTCAGGTGCCAAAGATGCTCTTAGTGCTGAGGAAAGAATGGGCCCCCATGGCCTTCTGCATATCATTCAAGCTAGAAACAGATTCAAAGATCCTGTTAGAGAAAGCTGATATGGCTCTTAGGAAGTACAAGATGCATATGGTTGTAGCCAATGAGCTTTTGAGCCGAAAGGAAGAGGTTGTAGTTGTCACCAGCAATGAAAAGATTTCAGTTCGCCGAAACAAGTCTCTGAGTGTTGATGATGTGGAGAGCCCCCTGGTTGAGCTTCTTGTGGAGAGGCATTCAGCCTATGTTGAGAATTCTGATCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004632 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009987 GO:0015936 GO:0015937 GO:0016874 GO:0016879 GO:0016881 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

DFP

Protein Analysis

325

Amino Acids

36.26

Weight (kDa)

7.08

Isoelectric Point (pI)

49.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DFP	PF04127	174 - 293	3.1e-10	DNA/pantothenate metabolism flavoprotein C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12350 AT1G12350 AT5G02080 AT5G02080 AT5G02080 AT5G02080 AT5G02080 AT5G02080 AT5G02080
fragaria_vesca	FvH4_5g38402 FvH4_5g38402 FvH4_5g38420 FvH4_5g38420 FvH4_7g08221 FvH4_7g08221
malus_domestica	MD08G1174000.v1.1 MD15G1360400.v1.1
prunus_persica	Prupe.1G507900_v2.0.a1 Prupe.1G507900_v2.0.a1 Prupe.1G507900_v2.0.a1 Prupe.1G507900_v2.0.a1
pyrus_communis	pycom08g14920 pycom15g32230
rosa_chinensis	RchiOBHm_Chr1g0340891 RchiOBHm_Chr1g0340911 RchiOBHm_Chr7g0240421
rosa_laevigata	RLG00000000678 RLG00000029049
rosa_multiflora	Rmu_sc0001211.1_g000112 Rmu_sc0002676.1_g000001
rosa_roxburghii	Rroxscaffold_3G00220100
rosa_rugosa	Rorug01G0160900.1 Rorug07G0335900
rosa_samantha	Rh1AG175900 Rh1BG143900 Rh1CG163800 Rh1DG175600 Rh7AG490200 Rh7BG463100 Rh7CG506600 Rh7DG474200
rosa_wichuraiana	Rw0G004950 Rw1G014660 Rw7G041000 Rw7G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	596
Acc36I	ACCTGC	1 cut(s)	329
Acc65I	GGTACC	1 cut(s)	188
AccB1I	GGYRCC	2 cut(s)	188, 670
AclWI	GGATC	2 cut(s)	347, 748
AcsI	RAATTY	5 cut(s)	24, 133, 375, 627, 961
AcuI	CTGAAG	1 cut(s)	220
AfaI	GTAC	4 cut(s)	190, 272, 402, 791
AfiI	CCNNNNNNNGG	1 cut(s)	149
AgsI	TTSAA	5 cut(s)	280, 365, 398, 733, 750
AjnI	CCWGG	1 cut(s)	918
AluBI	AGCT	8 cut(s)	74, 158, 240, 260, 736, 770, 820, 928
AluI	AGCT	8 cut(s)	74, 158, 240, 260, 736, 770, 820, 928
Alw26I	GTCTC	1 cut(s)	894
AlwI	GGATC	2 cut(s)	347, 748
AlwNI	CAGNNNCTG	2 cut(s)	587, 641
AoxI	GGCC	3 cut(s)	466, 705, 714
ApaI	GGGCCC	1 cut(s)	709
ApeKI	GCWGC	4 cut(s)	257, 452, 575, 578
ApoI	RAATTY	5 cut(s)	24, 133, 375, 627, 961
Asp718I	GGTACC	1 cut(s)	188
AspS9I	GGNCC	4 cut(s)	551, 644, 705, 706
AsuHPI	GGTGA	1 cut(s)	844
AvaII	GGWCC	2 cut(s)	551, 644
BaeGI	GKGCMC	1 cut(s)	709
BaeI	ACNNNNGTAYC	2 cut(s)	180, 213
BanI	GGYRCC	2 cut(s)	188, 670
BanII	GRGCYC	2 cut(s)	709, 917
BbvCI	CCTCAGC	1 cut(s)	692
BbvI	GCAGC	4 cut(s)	269, 439, 587, 590
BccI	CCATC	2 cut(s)	8, 517
BceAI	ACGGC	1 cut(s)	481
BciT130I	CCWGG	1 cut(s)	920
BcoDI	GTCTC	1 cut(s)	894
BfaI	CTAG	2 cut(s)	159, 737
BfmI	CTRYAG	1 cut(s)	453
BfuAI	ACCTGC	1 cut(s)	329
BglI	GCCNNNNNGGC	1 cut(s)	713
BglII	AGATCT	1 cut(s)	338
BisI	GCNGC	4 cut(s)	258, 453, 576, 579
BlsI	GCNGC	4 cut(s)	259, 454, 577, 580
BmcAI	AGTACT	1 cut(s)	272
Bme1390I	CCNGG	1 cut(s)	920
Bme18I	GGWCC	2 cut(s)	551, 644
BmgT120I	GGNCC	4 cut(s)	551, 644, 705, 706
BmiI	GGNNCC	6 cut(s)	190, 198, 319, 672, 707, 708
BmrFI	CCNGG	1 cut(s)	920
BmsI	GCATC	3 cut(s)	34, 669, 786
BpmI	CTGGAG	2 cut(s)	224, 494
Bpu10I	CCTNAGC	2 cut(s)	241, 692
BpuEI	CTTGAG	1 cut(s)	134
BsaJI	CCNNGG	4 cut(s)	192, 602, 711, 918
Bsc4I	CCNNNNNNNGG	1 cut(s)	149
Bse1I	ACTGG	1 cut(s)	406
Bse3DI	GCAATG	1 cut(s)	865
BseBI	CCWGG	1 cut(s)	920
BseDI	CCNNGG	4 cut(s)	192, 602, 711, 918
BseGI	GGATG	1 cut(s)	49
BseLI	CCNNNNNNNGG	1 cut(s)	149
BseMI	GCAATG	1 cut(s)	865
BseMII	CTCAG	4 cut(s)	84, 255, 683, 884
BseNI	ACTGG	1 cut(s)	406
BseRI	GAGGAG	4 cut(s)	66, 168, 267, 442
BseSI	GKGCMC	1 cut(s)	709
BseXI	GCAGC	4 cut(s)	269, 439, 587, 590
BshFI	GGCC	3 cut(s)	468, 707, 716
BshNI	GGYRCC	2 cut(s)	188, 670
BslFI	GGGAC	2 cut(s)	394, 584
BslI	CCNNNNNNNGG	1 cut(s)	149
BsmAI	GTCTC	1 cut(s)	894
BsmFI	GGGAC	2 cut(s)	394, 584
BsmI	GAATGC	1 cut(s)	943
BsnI	GGCC	3 cut(s)	468, 707, 716
Bsp120I	GGGCCC	1 cut(s)	705
Bsp1286I	GDGCHC	2 cut(s)	709, 917
Bsp143I	GATC	4 cut(s)	338, 352, 753, 967
Bsp19I	CCATGG	1 cut(s)	711
BspANI	GGCC	3 cut(s)	468, 707, 716
BspCNI	CTCAG	4 cut(s)	83, 254, 684, 885
BspLI	GGNNCC	6 cut(s)	190, 198, 319, 672, 707, 708
BspMAI	CTGCAG	1 cut(s)	457
BspMI	ACCTGC	1 cut(s)	329
BspPI	GGATC	2 cut(s)	347, 748
BspQI	GCTCTTC	1 cut(s)	602
BspT107I	GGYRCC	2 cut(s)	188, 670
BsrDI	GCAATG	1 cut(s)	865
BsrI	ACTGG	1 cut(s)	406
BssECI	CCNNGG	4 cut(s)	192, 602, 711, 918
BssMI	GATC	4 cut(s)	338, 352, 753, 967
BssT1I	CCWWGG	2 cut(s)	602, 711
Bst2UI	CCWGG	1 cut(s)	920
Bst4CI	ACNGT	1 cut(s)	196
Bst6I	CTCTTC	3 cut(s)	348, 602, 831
BstAPI	GCANNNNNTGC	1 cut(s)	290
BstC8I	GCNNGC	1 cut(s)	286
BstDEI	CTNAG	7 cut(s)	70, 241, 441, 685, 692, 782, 893
BstDSI	CCRYGG	2 cut(s)	192, 711
BstF5I	GGATG	1 cut(s)	49
BstKTI	GATC	4 cut(s)	341, 355, 756, 970
BstMAI	GTCTC	1 cut(s)	894
BstMBI	GATC	4 cut(s)	338, 352, 753, 967
BstMWI	GCNNNNNNNGC	6 cut(s)	290, 458, 679, 688, 713, 776
BstNI	CCWGG	1 cut(s)	920
BstNSI	RCATGY	1 cut(s)	560
BstSCI	CCNGG	1 cut(s)	918
BstSFI	CTRYAG	1 cut(s)	453
BstSLI	GKGCMC	1 cut(s)	709
BstV1I	GCAGC	4 cut(s)	269, 439, 587, 590
BstX2I	RGATCY	2 cut(s)	338, 753
BstYI	RGATCY	2 cut(s)	338, 753
BsuRI	GGCC	3 cut(s)	468, 707, 716
BtgI	CCRYGG	2 cut(s)	192, 711
BtsCI	GGATG	1 cut(s)	49
BtsI	GCAGTG	1 cut(s)	429
BtsIMutI	CAGTG	2 cut(s)	109, 429
BveI	ACCTGC	1 cut(s)	329
Cac8I	GCNNGC	1 cut(s)	286
CaiI	CAGNNNCTG	2 cut(s)	587, 641
Cfr13I	GGNCC	4 cut(s)	551, 644, 705, 706
Csp6I	GTAC	4 cut(s)	189, 271, 401, 790
CviAII	CATG	5 cut(s)	449, 557, 562, 613, 712
CviQI	GTAC	4 cut(s)	189, 271, 401, 790
DdeI	CTNAG	7 cut(s)	70, 241, 441, 685, 692, 782, 893
DpnI	GATC	4 cut(s)	340, 354, 755, 969
DpnII	GATC	4 cut(s)	338, 352, 753, 967
DraI	TTTAAA	1 cut(s)	84
DrdI	GACNNNNNNGTC	1 cut(s)	596
DseDI	GACNNNNNNGTC	1 cut(s)	596
Eam1104I	CTCTTC	3 cut(s)	348, 602, 831
EarI	CTCTTC	3 cut(s)	348, 602, 831
Eco130I	CCWWGG	2 cut(s)	602, 711
Eco24I	GRGCYC	2 cut(s)	709, 917
Eco47I	GGWCC	2 cut(s)	551, 644
Eco57I	CTGAAG	1 cut(s)	220
EcoO109I	RGGNCCY	1 cut(s)	706
EcoRI	GAATTC	2 cut(s)	133, 961
EcoRII	CCWGG	1 cut(s)	918
EcoT14I	CCWWGG	2 cut(s)	602, 711
EcoT22I	ATGCAT	1 cut(s)	801
EcoT38I	GRGCYC	2 cut(s)	709, 917
ErhI	CCWWGG	2 cut(s)	602, 711
FaeI	CATG	5 cut(s)	452, 560, 565, 616, 715
FalI	AAGNNNNNCTT	2 cut(s)	668, 700
FaqI	GGGAC	2 cut(s)	394, 584
FatI	CATG	5 cut(s)	448, 556, 561, 612, 711
FauNDI	CATATG	1 cut(s)	801
Fnu4HI	GCNGC	4 cut(s)	258, 453, 576, 579
FokI	GGATG	1 cut(s)	56
FriOI	GRGCYC	2 cut(s)	709, 917
Fsp4HI	GCNGC	4 cut(s)	258, 453, 576, 579
FspBI	CTAG	2 cut(s)	159, 737
GluI	GCNGC	4 cut(s)	258, 453, 576, 579
GsuI	CTGGAG	2 cut(s)	224, 494
HaeIII	GGCC	3 cut(s)	468, 707, 716
Hin1II	CATG	5 cut(s)	452, 560, 565, 616, 715
HinfI	GANTC	4 cut(s)	68, 386, 445, 746
HphI	GGTGA	1 cut(s)	844
Hpy166II	GTNNAC	2 cut(s)	403, 534
Hpy188I	TCNGA	4 cut(s)	312, 589, 894, 967
Hpy188III	TCNNGA	4 cut(s)	203, 347, 371, 511
Hpy8I	GTNNAC	2 cut(s)	403, 534
HpyAV	CCTTC	4 cut(s)	153, 274, 496, 727
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4V	TGCA	7 cut(s)	47, 336, 455, 520, 575, 723, 799
HpyF10VI	GCNNNNNNNGC	6 cut(s)	290, 458, 679, 688, 713, 776
HpyF3I	CTNAG	7 cut(s)	70, 241, 441, 685, 692, 782, 893
Hsp92II	CATG	5 cut(s)	452, 560, 565, 616, 715
KpnI	GGTACC	1 cut(s)	192
Kzo9I	GATC	4 cut(s)	338, 352, 753, 967
LguI	GCTCTTC	1 cut(s)	602
LmnI	GCTCC	4 cut(s)	79, 155, 205, 254
Lsp1109I	GCAGC	4 cut(s)	269, 439, 587, 590
LweI	GCATC	3 cut(s)	34, 669, 786
MaeI	CTAG	2 cut(s)	159, 737
MaeIII	GTNAC	3 cut(s)	175, 245, 850
MalI	GATC	4 cut(s)	340, 354, 755, 969
MboI	GATC	4 cut(s)	338, 352, 753, 967
MboII	GAAGA	3 cut(s)	335, 619, 848
MflI	RGATCY	2 cut(s)	338, 753
MhlI	GDGCHC	2 cut(s)	709, 917
MluCI	AATT	5 cut(s)	24, 133, 375, 627, 961
MlyI	GAGTC	3 cut(s)	62, 395, 439
Mph1103I	ATGCAT	1 cut(s)	801
MseI	TTAA	2 cut(s)	83, 126
MspR9I	CCNGG	1 cut(s)	920
Mva1269I	GAATGC	1 cut(s)	943
MvaI	CCWGG	1 cut(s)	920
MwoI	GCNNNNNNNGC	6 cut(s)	290, 458, 679, 688, 713, 776
NcoI	CCATGG	1 cut(s)	711
NdeI	CATATG	1 cut(s)	801
NdeII	GATC	4 cut(s)	338, 352, 753, 967
NlaIII	CATG	5 cut(s)	452, 560, 565, 616, 715
NlaIV	GGNNCC	6 cut(s)	190, 198, 319, 672, 707, 708
NmuCI	GTSAC	2 cut(s)	245, 850
NsiI	ATGCAT	1 cut(s)	801
NspI	RCATGY	1 cut(s)	560
PciSI	GCTCTTC	1 cut(s)	602
PctI	GAATGC	1 cut(s)	943
PfeI	GAWTC	1 cut(s)	746
PkrI	GCNGC	4 cut(s)	259, 454, 577, 580
PleI	GAGTC	3 cut(s)	62, 394, 439
PpsI	GAGTC	3 cut(s)	62, 394, 439
Psp6I	CCWGG	1 cut(s)	918
PspGI	CCWGG	1 cut(s)	918
PspN4I	GGNNCC	6 cut(s)	190, 198, 319, 672, 707, 708
PspOMI	GGGCCC	1 cut(s)	705
PspPI	GGNCC	4 cut(s)	551, 644, 705, 706
PstI	CTGCAG	1 cut(s)	457
PstNI	CAGNNNCTG	2 cut(s)	587, 641
PsuI	RGATCY	2 cut(s)	338, 753
RsaI	GTAC	4 cut(s)	190, 272, 402, 791
RsaNI	GTAC	4 cut(s)	189, 271, 401, 790
SapI	GCTCTTC	1 cut(s)	602
SaqAI	TTAA	2 cut(s)	83, 126
SatI	GCNGC	4 cut(s)	258, 453, 576, 579
Sau3AI	GATC	4 cut(s)	338, 352, 753, 967
Sau96I	GGNCC	4 cut(s)	551, 644, 705, 706
ScaI	AGTACT	1 cut(s)	272
SchI	GAGTC	3 cut(s)	62, 395, 439
ScrFI	CCNGG	1 cut(s)	920
SduI	GDGCHC	2 cut(s)	709, 917
SfaNI	GCATC	3 cut(s)	34, 669, 786
SfcI	CTRYAG	1 cut(s)	453
SfiI	GGCCNNNNNGGCC	1 cut(s)	713
SinI	GGWCC	2 cut(s)	551, 644
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
Sse9I	AATT	5 cut(s)	24, 133, 375, 627, 961
SspI	AATATT	1 cut(s)	498
SspMI	CTAG	2 cut(s)	159, 737
StyD4I	CCNGG	1 cut(s)	918
StyI	CCWWGG	2 cut(s)	602, 711
TaaI	ACNGT	1 cut(s)	196
TasI	AATT	5 cut(s)	24, 133, 375, 627, 961
TatI	WGTACW	3 cut(s)	270, 400, 789
TfiI	GAWTC	1 cut(s)	746
Tru1I	TTAA	2 cut(s)	83, 126
Tru9I	TTAA	2 cut(s)	83, 126
TscAI	CASTG	2 cut(s)	109, 429
TseFI	GTSAC	2 cut(s)	245, 850
TseI	GCWGC	4 cut(s)	257, 452, 575, 578
Tsp45I	GTSAC	2 cut(s)	245, 850
TspDTI	ATGAA	1 cut(s)	876
TspGWI	ACGGA	1 cut(s)	345
TspRI	CASTG	2 cut(s)	109, 429
VpaK11BI	GGWCC	2 cut(s)	551, 644
XapI	RAATTY	5 cut(s)	24, 133, 375, 627, 961
XceI	RCATGY	1 cut(s)	560
XcmI	CCANNNNNNNNNTGG	1 cut(s)	199
XspI	CTAG	2 cut(s)	159, 737
ZrmI	AGTACT	1 cut(s)	272
Zsp2I	ATGCAT	1 cut(s)	801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.