Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007193

Physical Location & Seq

Genomic Coordinates Reverse (-)

5240029 .. 5241541

Gene Structure 1513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G15220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGAGAAAACAGACGAAGAGAGGAAGAAGGCTCAGATGCTGGACGCTCGGGCCAGAAACATTAGCCACAATGTTCGCTGCACTGAGTGTGGAAGTCAGTCCATTGAAGACTCGCAGGCAGATATCGCTATTCTCCTTAGACAGCTGATCCGTAATGAGATAGGAGCTGGAAAAACTGACAAAGAGATCTACAGTAAGCTGGAGGATGAATTTGGGGAGACAGTGCTTTATGCCCCAAAATTTGATTTGCAGACCGCAGCCTTGTGGCTCACACCGGTTATAATTGCTGGAGGTACCGCTGCAGGAATAGTTTACCAGAAGCACAGGCTAAGGAAAAATGTAGACATCATGGCGTTGAACCTTATTAGAGGTGTACCATTGACTCCAAAAGAGAGAGTTACCATTCTTGATGTTCTTATTCCACCTTCCCCTCCTCCTCAGGGAGTTGTTTCCCGATTGAGGAGATGGCTCAACCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0007275 GO:0008150 GO:0008152 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016020 GO:0016043 GO:0016491 GO:0017004 GO:0019866 GO:0022414 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CcmH

Protein Analysis

159

Amino Acids

17.88

Weight (kDa)

9.2

Isoelectric Point (pI)

67.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CcmH	PF03918	4 - 113	2.7e-28	Cytochrome C biogenesis protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0007193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15220 AT1G15220
fragaria_vesca	FvH4_6g31840
malus_domestica	MD17G1190700.v1.1
prunus_persica	Prupe.6G357100_v2.0.a1 Prupe.6G357100_v2.0.a1 Prupe.6G357100_v2.0.a1
pyrus_communis	pycom17g19790
rosa_chinensis	RchiOBHm_Chr2g0139101 RchiOBHm_Chr2g0139151
rosa_laevigata	RLG00000019791
rosa_multiflora	Rmu_sc0001803.1_g000023 Rmu_sc0001803.1_g000031 Rmu_sc0006014.1_g000018 Rmu_sc0014249.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105620
rosa_rugosa	Rorug02G0354800 Rorug02G0355100
rosa_samantha	Rh2AG404800 Rh2BG415300 Rh2CG391100 Rh2DG424600 Rh2DG425000
rosa_wichuraiana	Rw2G033070 Rw2G033090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	281
Acc65I	GGTACC	1 cut(s)	293
AccB1I	GGYRCC	1 cut(s)	293
AccI	GTMKAC	1 cut(s)	342
AciI	CCGC	2 cut(s)	255, 297
AclWI	GGATC	1 cut(s)	142
AcsI	RAATTY	2 cut(s)	209, 239
AdeI	CACNNNGTG	1 cut(s)	87
AfaI	GTAC	2 cut(s)	295, 375
AfiI	CCNNNNNNNGG	2 cut(s)	440, 459
AgeI	ACCGGT	2 cut(s)	274, 474
AgsI	TTSAA	2 cut(s)	107, 358
AluBI	AGCT	3 cut(s)	145, 167, 199
AluI	AGCT	3 cut(s)	145, 167, 199
Alw26I	GTCTC	1 cut(s)	212
AlwI	GGATC	1 cut(s)	142
AlwNI	CAGNNNCTG	1 cut(s)	40
Ama87I	CYCGRG	1 cut(s)	48
AoxI	GGCC	1 cut(s)	51
ApeKI	GCWGC	3 cut(s)	78, 257, 299
ApoI	RAATTY	2 cut(s)	209, 239
AsiGI	ACCGGT	2 cut(s)	274, 474
Asp718I	GGTACC	1 cut(s)	293
AspS9I	GGNCC	1 cut(s)	51
AvaI	CYCGRG	1 cut(s)	48
AxyI	CCTNAGG	1 cut(s)	438
BanI	GGYRCC	1 cut(s)	293
BbsI	GAAGAC	1 cut(s)	114
BbvI	GCAGC	3 cut(s)	65, 269, 286
BccI	CCATC	1 cut(s)	459
BcoDI	GTCTC	1 cut(s)	212
BfmI	CTRYAG	2 cut(s)	190, 300
BglII	AGATCT	1 cut(s)	186
BisI	GCNGC	3 cut(s)	79, 258, 300
BlsI	GCNGC	3 cut(s)	80, 259, 301
BmeT110I	CYCGRG	1 cut(s)	48
BmgT120I	GGNCC	1 cut(s)	51
BmiI	GGNNCC	1 cut(s)	295
BmsI	GCATC	1 cut(s)	27
BpiI	GAAGAC	1 cut(s)	114
BpmI	CTGGAG	2 cut(s)	221, 309
Bpu10I	CCTNAGC	1 cut(s)	329
BsaWI	WCCGGW	2 cut(s)	274, 474
Bsc4I	CCNNNNNNNGG	2 cut(s)	440, 459
Bse118I	RCCGGY	2 cut(s)	274, 474
Bse21I	CCTNAGG	1 cut(s)	438
BseGI	GGATG	1 cut(s)	211
BseLI	CCNNNNNNNGG	2 cut(s)	440, 459
BseMII	CTCAG	3 cut(s)	47, 75, 452
BseRI	GAGGAG	3 cut(s)	423, 426, 475
BseXI	GCAGC	3 cut(s)	65, 269, 286
BsgI	GTGCAG	1 cut(s)	64
BshFI	GGCC	1 cut(s)	53
BshNI	GGYRCC	1 cut(s)	293
BshTI	ACCGGT	2 cut(s)	274, 474
BsiHKCI	CYCGRG	1 cut(s)	48
BsiSI	CCGG	2 cut(s)	275, 475
BslI	CCNNNNNNNGG	2 cut(s)	440, 459
BsmAI	GTCTC	1 cut(s)	212
BsnI	GGCC	1 cut(s)	53
BsoBI	CYCGRG	1 cut(s)	48
Bsp143I	GATC	2 cut(s)	147, 186
BspACI	CCGC	2 cut(s)	255, 297
BspANI	GGCC	1 cut(s)	53
BspCNI	CTCAG	3 cut(s)	46, 76, 451
BspLI	GGNNCC	1 cut(s)	295
BspMAI	CTGCAG	1 cut(s)	304
BspPI	GGATC	1 cut(s)	142
BspT107I	GGYRCC	1 cut(s)	293
BsrFI	RCCGGY	2 cut(s)	274, 474
BssAI	RCCGGY	2 cut(s)	274, 474
BssMI	GATC	2 cut(s)	147, 186
Bst4CI	ACNGT	2 cut(s)	194, 223
Bst6I	CTCTTC	1 cut(s)	12
BstC8I	GCNNGC	1 cut(s)	117
BstDEI	CTNAG	5 cut(s)	33, 84, 137, 329, 438
BstF5I	GGATG	1 cut(s)	211
BstKTI	GATC	2 cut(s)	150, 189
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	2 cut(s)	147, 186
BstMWI	GCNNNNNNNGC	1 cut(s)	125
BstSFI	CTRYAG	2 cut(s)	190, 300
BstV1I	GCAGC	3 cut(s)	65, 269, 286
BstV2I	GAAGAC	1 cut(s)	114
BstX2I	RGATCY	1 cut(s)	186
BstYI	RGATCY	1 cut(s)	186
Bsu36I	CCTNAGG	1 cut(s)	438
BsuRI	GGCC	1 cut(s)	53
BtsCI	GGATG	1 cut(s)	211
BtsIMutI	CAGTG	2 cut(s)	81, 228
Cac8I	GCNNGC	1 cut(s)	117
CaiI	CAGNNNCTG	1 cut(s)	40
Cfr10I	RCCGGY	2 cut(s)	274, 474
Cfr13I	GGNCC	1 cut(s)	51
CseI	GACGC	1 cut(s)	53
Csp6I	GTAC	2 cut(s)	294, 374
CspAI	ACCGGT	2 cut(s)	274, 474
CviAII	CATG	1 cut(s)	349
CviQI	GTAC	2 cut(s)	294, 374
DdeI	CTNAG	5 cut(s)	33, 84, 137, 329, 438
DpnI	GATC	2 cut(s)	149, 188
DpnII	GATC	2 cut(s)	147, 186
DraIII	CACNNNGTG	1 cut(s)	87
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
Eco32I	GATATC	1 cut(s)	124
Eco81I	CCTNAGG	1 cut(s)	438
Eco88I	CYCGRG	1 cut(s)	48
EcoRV	GATATC	1 cut(s)	124
FaeI	CATG	1 cut(s)	352
FaiI	YATR	3 cut(s)	231, 281, 350
FatI	CATG	1 cut(s)	348
FblI	GTMKAC	1 cut(s)	342
Fnu4HI	GCNGC	3 cut(s)	79, 258, 300
FokI	GGATG	1 cut(s)	218
Fsp4HI	GCNGC	3 cut(s)	79, 258, 300
GluI	GCNGC	3 cut(s)	79, 258, 300
GsuI	CTGGAG	2 cut(s)	221, 309
HaeIII	GGCC	1 cut(s)	53
HapII	CCGG	2 cut(s)	275, 475
HgaI	GACGC	1 cut(s)	53
Hin1II	CATG	1 cut(s)	352
HinfI	GANTC	2 cut(s)	110, 382
HpaII	CCGG	2 cut(s)	275, 475
Hpy166II	GTNNAC	3 cut(s)	313, 343, 374
Hpy188I	TCNGA	1 cut(s)	36
Hpy188III	TCNNGA	2 cut(s)	407, 453
Hpy8I	GTNNAC	3 cut(s)	313, 343, 374
HpyAV	CCTTC	2 cut(s)	22, 435
HpyCH4III	ACNGT	2 cut(s)	194, 223
HpyCH4V	TGCA	3 cut(s)	81, 250, 302
HpyF10VI	GCNNNNNNNGC	1 cut(s)	125
HpyF3I	CTNAG	5 cut(s)	33, 84, 137, 329, 438
Hsp92II	CATG	1 cut(s)	352
KpnI	GGTACC	1 cut(s)	297
Kzo9I	GATC	2 cut(s)	147, 186
LmnI	GCTCC	1 cut(s)	164
Lsp1109I	GCAGC	3 cut(s)	65, 269, 286
LweI	GCATC	1 cut(s)	27
MaeIII	GTNAC	1 cut(s)	397
MalI	GATC	2 cut(s)	149, 188
MboI	GATC	2 cut(s)	147, 186
MboII	GAAGA	3 cut(s)	29, 37, 119
MflI	RGATCY	1 cut(s)	186
MluCI	AATT	3 cut(s)	209, 239, 282
MlyI	GAGTC	2 cut(s)	104, 376
MnlI	CCTC	8 cut(s)	15, 196, 284, 362, 441, 444, 447, 453
MspA1I	CMGCKG	2 cut(s)	145, 299
MspI	CCGG	2 cut(s)	275, 475
MwoI	GCNNNNNNNGC	1 cut(s)	125
NdeII	GATC	2 cut(s)	147, 186
NlaIII	CATG	1 cut(s)	352
NlaIV	GGNNCC	1 cut(s)	295
PinAI	ACCGGT	2 cut(s)	274, 474
PkrI	GCNGC	3 cut(s)	80, 259, 301
PleI	GAGTC	2 cut(s)	104, 376
PpsI	GAGTC	2 cut(s)	104, 376
PsiI	TTATAA	1 cut(s)	281
PspN4I	GGNNCC	1 cut(s)	295
PspPI	GGNCC	1 cut(s)	51
PstI	CTGCAG	1 cut(s)	304
PstNI	CAGNNNCTG	1 cut(s)	40
PsuI	RGATCY	1 cut(s)	186
PvuII	CAGCTG	1 cut(s)	145
RsaI	GTAC	2 cut(s)	295, 375
RsaNI	GTAC	2 cut(s)	294, 374
SatI	GCNGC	3 cut(s)	79, 258, 300
Sau3AI	GATC	2 cut(s)	147, 186
Sau96I	GGNCC	1 cut(s)	51
SchI	GAGTC	2 cut(s)	104, 376
SetI	ASST	7 cut(s)	147, 169, 201, 295, 363, 373, 427
SfaNI	GCATC	1 cut(s)	27
SfcI	CTRYAG	2 cut(s)	190, 300
Sse9I	AATT	3 cut(s)	209, 239, 282
SsiI	CCGC	2 cut(s)	255, 297
TaaI	ACNGT	2 cut(s)	194, 223
TasI	AATT	3 cut(s)	209, 239, 282
TscAI	CASTG	2 cut(s)	88, 228
TseI	GCWGC	3 cut(s)	78, 257, 299
TspDTI	ATGAA	1 cut(s)	222
TspGWI	ACGGA	1 cut(s)	140
TspRI	CASTG	2 cut(s)	88, 228
XapI	RAATTY	2 cut(s)	209, 239
XmiI	GTMKAC	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.