Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014249.1

Orthogroup ID

OG0007193

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 340

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014249.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 245 bp

atgcatttgataattgtgcagttaattcgtgacgagattcatgctgggaagagtgacaaggagatctacaagaagcttgaggaggattttggggagacggtactttatgccccaaaatttgatctgcagactgcaggcttatggctatcaccgcttgtggttgcaggtgctgctgcaggtatttgggcttataagaagcacagacaaaggactaacgtccacgtcatggctttgaaccttattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0007275 GO:0008150 GO:0008152 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016020 GO:0016043 GO:0016491 GO:0017004 GO:0019866 GO:0022414 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CcmH

Protein Analysis

81

Amino Acids

9.18

Weight (kDa)

8.06

Isoelectric Point (pI)

42.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15220 AT1G15220
fragaria_vesca	FvH4_6g31840
malus_domestica	MD17G1190700.v1.1
prunus_persica	Prupe.6G357100_v2.0.a1 Prupe.6G357100_v2.0.a1 Prupe.6G357100_v2.0.a1
pyrus_communis	pycom17g19790
rosa_chinensis	RchiOBHm_Chr2g0139101 RchiOBHm_Chr2g0139151
rosa_laevigata	RLG00000019791
rosa_multiflora	Rmu_sc0001803.1_g000023 Rmu_sc0001803.1_g000031 Rmu_sc0006014.1_g000018 Rmu_sc0014249.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105620
rosa_rugosa	Rorug02G0354800 Rorug02G0355100
rosa_samantha	Rh2AG404800 Rh2BG415300 Rh2CG391100 Rh2DG424600 Rh2DG425000
rosa_wichuraiana	Rw2G033070 Rw2G033090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	192
AarI	CACCTGC	1 cut(s)	155
Acc36I	ACCTGC	2 cut(s)	155, 167
AccB7I	CCANNNNNTGG	1 cut(s)	226
AciI	CCGC	1 cut(s)	152
AcsI	RAATTY	1 cut(s)	116
AfaI	GTAC	1 cut(s)	102
AfiI	CCNNNNNNNGG	1 cut(s)	226
AgsI	TTSAA	1 cut(s)	235
AjiI	CACGTC	1 cut(s)	223
AluBI	AGCT	1 cut(s)	76
AluI	AGCT	1 cut(s)	76
Alw26I	GTCTC	1 cut(s)	89
AlwNI	CAGNNNCTG	1 cut(s)	170
ApeKI	GCWGC	2 cut(s)	170, 173
ApoI	RAATTY	1 cut(s)	116
AsuHPI	GGTGA	1 cut(s)	141
BbvI	GCAGC	2 cut(s)	157, 160
BcgI	CGANNNNNNTGC	4 cut(s)	8, 23, 42, 57
BcoDI	GTCTC	1 cut(s)	89
BfmI	CTRYAG	3 cut(s)	125, 132, 174
BfuAI	ACCTGC	2 cut(s)	155, 167
BglII	AGATCT	1 cut(s)	63
BisI	GCNGC	2 cut(s)	171, 174
BlsI	GCNGC	2 cut(s)	172, 175
BmgBI	CACGTC	1 cut(s)	223
BoxI	GACNNNNGTC	1 cut(s)	215
BpuEI	CTTGAG	1 cut(s)	98
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
BseLI	CCNNNNNNNGG	1 cut(s)	226
BseRI	GAGGAG	1 cut(s)	95
BseXI	GCAGC	2 cut(s)	157, 160
BseYI	CCCAGC	1 cut(s)	44
BsgI	GTGCAG	1 cut(s)	38
BslI	CCNNNNNNNGG	1 cut(s)	226
BsmAI	GTCTC	1 cut(s)	89
BsmBI	CGTCTC	1 cut(s)	89
Bsp143I	GATC	2 cut(s)	63, 121
BspACI	CCGC	1 cut(s)	152
BspMAI	CTGCAG	3 cut(s)	129, 136, 178
BspMI	ACCTGC	2 cut(s)	155, 167
BssMI	GATC	2 cut(s)	63, 121
Bst4CI	ACNGT	1 cut(s)	100
Bst6I	CTCTTC	1 cut(s)	44
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstC8I	GCNNGC	1 cut(s)	136
BstKTI	GATC	2 cut(s)	66, 124
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	2 cut(s)	63, 121
BstMWI	GCNNNNNNNGC	2 cut(s)	151, 170
BstPAI	GACNNNNGTC	1 cut(s)	215
BstSFI	CTRYAG	3 cut(s)	125, 132, 174
BstV1I	GCAGC	2 cut(s)	157, 160
BstX2I	RGATCY	1 cut(s)	63
BstYI	RGATCY	1 cut(s)	63
BtrI	CACGTC	1 cut(s)	223
BveI	ACCTGC	2 cut(s)	155, 167
Cac8I	GCNNGC	1 cut(s)	136
CaiI	CAGNNNCTG	1 cut(s)	170
Csp6I	GTAC	1 cut(s)	101
CviAII	CATG	2 cut(s)	41, 226
CviJI	RGCY	5 cut(s)	76, 138, 145, 188, 230
CviKI_1	RGCY	5 cut(s)	76, 138, 145, 188, 230
CviQI	GTAC	1 cut(s)	101
DpnI	GATC	2 cut(s)	65, 123
DpnII	GATC	2 cut(s)	63, 121
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
EcoT22I	ATGCAT	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	89
FaeI	CATG	2 cut(s)	44, 229
FaiI	YATR	5 cut(s)	42, 108, 142, 192, 227
FatI	CATG	2 cut(s)	40, 225
Fnu4HI	GCNGC	2 cut(s)	171, 174
Fsp4HI	GCNGC	2 cut(s)	171, 174
GluI	GCNGC	2 cut(s)	171, 174
GsaI	CCCAGC	1 cut(s)	48
Hin1II	CATG	2 cut(s)	44, 229
HindIII	AAGCTT	1 cut(s)	74
HinfI	GANTC	1 cut(s)	37
HphI	GGTGA	1 cut(s)	141
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188III	TCNNGA	1 cut(s)	29
Hpy8I	GTNNAC	1 cut(s)	220
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4IV	ACGT	2 cut(s)	216, 222
HpyCH4V	TGCA	6 cut(s)	4, 19, 127, 134, 164, 176
HpyF10VI	GCNNNNNNNGC	2 cut(s)	151, 170
HpySE526I	ACGT	2 cut(s)	216, 222
Hsp92II	CATG	2 cut(s)	44, 229
Kzo9I	GATC	2 cut(s)	63, 121
LpnPI	CCDG	4 cut(s)	30, 120, 150, 162
Lsp1109I	GCAGC	2 cut(s)	157, 160
MaeII	ACGT	2 cut(s)	216, 222
MaeIII	GTNAC	2 cut(s)	29, 53
MalI	GATC	2 cut(s)	65, 123
MboI	GATC	2 cut(s)	63, 121
MboII	GAAGA	1 cut(s)	61
MflI	RGATCY	1 cut(s)	63
MluCI	AATT	3 cut(s)	12, 24, 116
MnlI	CCTC	2 cut(s)	73, 76
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	23
MwoI	GCNNNNNNNGC	2 cut(s)	151, 170
NdeII	GATC	2 cut(s)	63, 121
NlaIII	CATG	2 cut(s)	44, 229
NmuCI	GTSAC	2 cut(s)	29, 53
NsiI	ATGCAT	1 cut(s)	6
PaqCI	CACCTGC	1 cut(s)	155
PfeI	GAWTC	1 cut(s)	37
PflMI	CCANNNNNTGG	1 cut(s)	226
PkrI	GCNGC	2 cut(s)	172, 175
PshAI	GACNNNNGTC	1 cut(s)	215
PsiI	TTATAA	1 cut(s)	192
PspFI	CCCAGC	1 cut(s)	44
PstI	CTGCAG	3 cut(s)	129, 136, 178
PstNI	CAGNNNCTG	1 cut(s)	170
PsuI	RGATCY	1 cut(s)	63
RsaI	GTAC	1 cut(s)	102
RsaNI	GTAC	1 cut(s)	101
SaqAI	TTAA	1 cut(s)	23
SatI	GCNGC	2 cut(s)	171, 174
Sau3AI	GATC	2 cut(s)	63, 121
SetI	ASST	6 cut(s)	78, 169, 181, 219, 225, 240
SfcI	CTRYAG	3 cut(s)	125, 132, 174
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
Sse9I	AATT	3 cut(s)	12, 24, 116
SsiI	CCGC	1 cut(s)	152
TaaI	ACNGT	1 cut(s)	100
TaiI	ACGT	2 cut(s)	219, 225
TasI	AATT	3 cut(s)	12, 24, 116
TfiI	GAWTC	1 cut(s)	37
Tru1I	TTAA	1 cut(s)	23
Tru9I	TTAA	1 cut(s)	23
TseFI	GTSAC	2 cut(s)	29, 53
TseI	GCWGC	2 cut(s)	170, 173
Tsp45I	GTSAC	2 cut(s)	29, 53
TspDTI	ATGAA	1 cut(s)	29
Van91I	CCANNNNNTGG	1 cut(s)	226
XapI	RAATTY	1 cut(s)	116
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.