RchiOBHm_Chr2g0139151

Cytochrome c-type biogenesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0007193
Physical Location & Seq
Forward (+)
56778780 .. 56782846
4067 bp
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UTR
Exon/CDS
Intron
PRQ50973

Sequence Viewer

Length: 480 bp
ATGGAAAACGAAGAGGACCCTGTGAAGAAGACTCAAGTGGTGGATGCCCGGGCTAGAAATATCAGTCATAATGTTAGGTGCACTGAGTGTGGGAGTCAGTCCATTGAGGATTCACAAGCTGATATCGCCATTCTTCTTAGAAAGTTAATTCGTGACGAGATTCATGCTGGGAAGAGTGACAAGGAGATCTACAAGAAGCTTGAGGAGGATTTTGGGGAGACGGTTCTTTATGCCCCAAAATTTGATCTGCAGACTGCAGGCTTATGGCTATCACCGCTCGTGGTTGCTGGTGCTGCTGCAGGTATTTGGGCTTATAAGAAGCACAGACAAAGGACTAACGTCCACGTCATGGCTTTGAACCTTATTAGAGGTGTTCCACTGACCCCAAATGAGAAGCAAACCATGTTAGACCTCCTCACACCGCCACCTTCACGAGGAAATATACCTTCGTCTTGGTGGAGGAGGTGGAGAGAACAATGA

Protein Analysis

159

Amino Acids

18.11

Weight (kDa)

8.57

Isoelectric Point (pI)

67.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CcmH PF03918 4 - 138 2.3e-29 Cytochrome C biogenesis protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 315
Acc36I ACCTGC 1 cut(s) 290
AccB7I CCANNNNNTGG 1 cut(s) 349
AccBSI CCGCTC 1 cut(s) 277
AciI CCGC 2 cut(s) 275, 422
AcsI RAATTY 1 cut(s) 239
AdeI CACNNNGTG 1 cut(s) 87
AfiI CCNNNNNNNGG 2 cut(s) 349, 434
AgsI TTSAA 1 cut(s) 358
AjiI CACGTC 1 cut(s) 346
AluBI AGCT 2 cut(s) 119, 199
AluI AGCT 2 cut(s) 119, 199
Alw21I GWGCWC 1 cut(s) 83
Alw26I GTCTC 1 cut(s) 212
Alw44I GTGCAC 1 cut(s) 79
Ama87I CYCGRG 1 cut(s) 48
ApaLI GTGCAC 1 cut(s) 79
ApeKI GCWGC 2 cut(s) 293, 296
ApoI RAATTY 1 cut(s) 239
AspS9I GGNCC 1 cut(s) 16
AsuC2I CCSGG 2 cut(s) 49, 50
AsuHPI GGTGA 1 cut(s) 264
AvaI CYCGRG 1 cut(s) 48
AvaII GGWCC 1 cut(s) 16
BaeGI GKGCMC 1 cut(s) 83
BauI CACGAG 2 cut(s) 278, 432
BbsI GAAGAC 1 cut(s) 35
Bbv12I GWGCWC 1 cut(s) 83
BbvI GCAGC 2 cut(s) 280, 283
BcgI CGANNNNNNTGC 2 cut(s) 146, 180
BcnI CCSGG 2 cut(s) 49, 50
BcoDI GTCTC 1 cut(s) 212
BfaI CTAG 1 cut(s) 54
BfmI CTRYAG 3 cut(s) 248, 255, 297
BfuAI ACCTGC 1 cut(s) 290
BglII AGATCT 1 cut(s) 186
BisI GCNGC 2 cut(s) 294, 297
BlsI GCNGC 2 cut(s) 295, 298
Bme1390I CCNGG 2 cut(s) 49, 50
Bme18I GGWCC 1 cut(s) 16
BmeT110I CYCGRG 1 cut(s) 48
BmgBI CACGTC 1 cut(s) 346
BmgT120I GGNCC 1 cut(s) 16
BmiI GGNNCC 1 cut(s) 18
BmrFI CCNGG 2 cut(s) 49, 50
BmsI GCATC 1 cut(s) 34
BoxI GACNNNNGTC 1 cut(s) 338
BpiI GAAGAC 1 cut(s) 35
BpuEI CTTGAG 2 cut(s) 18, 221
BpuMI CCSGG 2 cut(s) 49, 50
BsaJI CCNNGG 1 cut(s) 48
Bsc4I CCNNNNNNNGG 2 cut(s) 349, 434
BseDI CCNNGG 1 cut(s) 48
BseGI GGATG 1 cut(s) 49
BseLI CCNNNNNNNGG 2 cut(s) 349, 434
BseMII CTCAG 1 cut(s) 75
BseRI GAGGAG 3 cut(s) 218, 404, 475
BseSI GKGCMC 1 cut(s) 83
BseXI GCAGC 2 cut(s) 280, 283
BseYI CCCAGC 1 cut(s) 167
BsiHKAI GWGCWC 1 cut(s) 83
BsiHKCI CYCGRG 1 cut(s) 48
BsiSI CCGG 1 cut(s) 49
BslI CCNNNNNNNGG 2 cut(s) 349, 434
BsmAI GTCTC 1 cut(s) 212
BsmBI CGTCTC 1 cut(s) 212
BsoBI CYCGRG 1 cut(s) 48
Bsp1286I GDGCHC 1 cut(s) 83
Bsp143I GATC 2 cut(s) 186, 244
BspACI CCGC 2 cut(s) 275, 422
BspCNI CTCAG 1 cut(s) 76
BspLI GGNNCC 1 cut(s) 18
BspMAI CTGCAG 3 cut(s) 252, 259, 301
BspMI ACCTGC 1 cut(s) 290
BsrBI CCGCTC 1 cut(s) 277
BssECI CCNNGG 1 cut(s) 48
BssMI GATC 2 cut(s) 186, 244
BssSI CACGAG 2 cut(s) 278, 432
Bst2BI CACGAG 2 cut(s) 278, 432
Bst4CI ACNGT 1 cut(s) 223
Bst6I CTCTTC 2 cut(s) 6, 167
BstC8I GCNNGC 1 cut(s) 259
BstDEI CTNAG 2 cut(s) 84, 137
BstENI CCTNNNNNAGG 1 cut(s) 432
BstF5I GGATG 1 cut(s) 49
BstKTI GATC 2 cut(s) 189, 247
BstMAI GTCTC 1 cut(s) 212
BstMBI GATC 2 cut(s) 186, 244
BstMWI GCNNNNNNNGC 3 cut(s) 125, 274, 293
BstPAI GACNNNNGTC 1 cut(s) 338
BstSCI CCNGG 2 cut(s) 47, 48
BstSFI CTRYAG 3 cut(s) 248, 255, 297
BstSLI GKGCMC 1 cut(s) 83
BstV1I GCAGC 2 cut(s) 280, 283
BstV2I GAAGAC 1 cut(s) 35
BstX2I RGATCY 1 cut(s) 186
BstYI RGATCY 1 cut(s) 186
BtrI CACGTC 1 cut(s) 346
BtsCI GGATG 1 cut(s) 49
BtsIMutI CAGTG 2 cut(s) 81, 377
BveI ACCTGC 1 cut(s) 290
Cac8I GCNNGC 1 cut(s) 259
Cfr13I GGNCC 1 cut(s) 16
Cfr9I CCCGGG 1 cut(s) 48
CviAII CATG 3 cut(s) 164, 349, 403
CviJI RGCY 7 cut(s) 53, 119, 199, 261, 268, 311, 353
CviKI_1 RGCY 7 cut(s) 53, 119, 199, 261, 268, 311, 353
DdeI CTNAG 2 cut(s) 84, 137
DpnI GATC 2 cut(s) 188, 246
DpnII GATC 2 cut(s) 186, 244
DraIII CACNNNGTG 1 cut(s) 87
Eam1104I CTCTTC 2 cut(s) 6, 167
EarI CTCTTC 2 cut(s) 6, 167
Eco32I GATATC 1 cut(s) 124
Eco47I GGWCC 1 cut(s) 16
Eco88I CYCGRG 1 cut(s) 48
EcoNI CCTNNNNNAGG 1 cut(s) 432
EcoO109I RGGNCCY 1 cut(s) 16
EcoRV GATATC 1 cut(s) 124
Esp3I CGTCTC 1 cut(s) 212
FaeI CATG 3 cut(s) 167, 352, 406
FaiI YATR 8 cut(s) 69, 165, 231, 265, 315, 350, 404, 443
FatI CATG 3 cut(s) 163, 348, 402
Fnu4HI GCNGC 2 cut(s) 294, 297
FokI GGATG 1 cut(s) 56
Fsp4HI GCNGC 2 cut(s) 294, 297
FspBI CTAG 1 cut(s) 54
GluI GCNGC 2 cut(s) 294, 297
GsaI CCCAGC 1 cut(s) 171
HapII CCGG 1 cut(s) 49
Hin1II CATG 3 cut(s) 167, 352, 406
HindIII AAGCTT 1 cut(s) 197
HinfI GANTC 4 cut(s) 31, 94, 110, 160
HpaII CCGG 1 cut(s) 49
HphI GGTGA 1 cut(s) 264
Hpy166II GTNNAC 2 cut(s) 81, 343
Hpy188III TCNNGA 2 cut(s) 152, 432
Hpy8I GTNNAC 2 cut(s) 81, 343
HpyAV CCTTC 2 cut(s) 438, 456
HpyCH4III ACNGT 1 cut(s) 223
HpyCH4IV ACGT 2 cut(s) 339, 345
HpyCH4V TGCA 4 cut(s) 81, 250, 257, 299
HpyF10VI GCNNNNNNNGC 3 cut(s) 125, 274, 293
HpyF3I CTNAG 2 cut(s) 84, 137
HpySE526I ACGT 2 cut(s) 339, 345
Hsp92II CATG 3 cut(s) 167, 352, 406
Kzo9I GATC 2 cut(s) 186, 244
LpnPI CCDG 6 cut(s) 33, 62, 153, 243, 273, 285
Lsp1109I GCAGC 2 cut(s) 280, 283
LweI GCATC 1 cut(s) 34
MaeI CTAG 1 cut(s) 54
MaeII ACGT 2 cut(s) 339, 345
MaeIII GTNAC 2 cut(s) 152, 176
MalI GATC 2 cut(s) 188, 246
MbiI CCGCTC 1 cut(s) 277
MboI GATC 2 cut(s) 186, 244
MboII GAAGA 5 cut(s) 23, 37, 40, 125, 184
MflI RGATCY 1 cut(s) 186
MhlI GDGCHC 1 cut(s) 83
MluCI AATT 2 cut(s) 147, 239
MlyI GAGTC 2 cut(s) 25, 103
MseI TTAA 1 cut(s) 146
MspI CCGG 1 cut(s) 49
MspR9I CCNGG 2 cut(s) 49, 50
MwoI GCNNNNNNNGC 3 cut(s) 125, 274, 293
NciI CCSGG 2 cut(s) 49, 50
NdeII GATC 2 cut(s) 186, 244
NlaIII CATG 3 cut(s) 167, 352, 406
NlaIV GGNNCC 1 cut(s) 18
NmuCI GTSAC 2 cut(s) 152, 176
PfeI GAWTC 2 cut(s) 110, 160
PflMI CCANNNNNTGG 1 cut(s) 349
PkrI GCNGC 2 cut(s) 295, 298
PleI GAGTC 2 cut(s) 25, 102
PpsI GAGTC 2 cut(s) 25, 102
PpuMI RGGWCCY 1 cut(s) 16
PshAI GACNNNNGTC 1 cut(s) 338
PsiI TTATAA 1 cut(s) 315
Psp5II RGGWCCY 1 cut(s) 16
PspFI CCCAGC 1 cut(s) 167
PspN4I GGNNCC 1 cut(s) 18
PspPI GGNCC 1 cut(s) 16
PspPPI RGGWCCY 1 cut(s) 16
PstI CTGCAG 3 cut(s) 252, 259, 301
PsuI RGATCY 1 cut(s) 186
SaqAI TTAA 1 cut(s) 146
SatI GCNGC 2 cut(s) 294, 297
Sau3AI GATC 2 cut(s) 186, 244
Sau96I GGNCC 1 cut(s) 16
SchI GAGTC 2 cut(s) 25, 103
ScrFI CCNGG 2 cut(s) 49, 50
SduI GDGCHC 1 cut(s) 83
SfaNI GCATC 1 cut(s) 34
SfcI CTRYAG 3 cut(s) 248, 255, 297
SinI GGWCC 1 cut(s) 16
SmaI CCCGGG 1 cut(s) 50
SmlI CTYRAG 2 cut(s) 33, 200
SmoI CTYRAG 2 cut(s) 33, 200
SrfI GCCCGGGC 1 cut(s) 50
Sse9I AATT 2 cut(s) 147, 239
SsiI CCGC 2 cut(s) 275, 422
SspMI CTAG 1 cut(s) 54
StyD4I CCNGG 2 cut(s) 47, 48
TaaI ACNGT 1 cut(s) 223
TaiI ACGT 2 cut(s) 342, 348
TasI AATT 2 cut(s) 147, 239
TfiI GAWTC 2 cut(s) 110, 160
Tru1I TTAA 1 cut(s) 146
Tru9I TTAA 1 cut(s) 146
TscAI CASTG 2 cut(s) 88, 384
TseFI GTSAC 2 cut(s) 152, 176
TseI GCWGC 2 cut(s) 293, 296
Tsp45I GTSAC 2 cut(s) 152, 176
TspDTI ATGAA 1 cut(s) 152
TspMI CCCGGG 1 cut(s) 48
TspRI CASTG 2 cut(s) 88, 384
Van91I CCANNNNNTGG 1 cut(s) 349
VneI GTGCAC 1 cut(s) 79
VpaK11BI GGWCC 1 cut(s) 16
XagI CCTNNNNNAGG 1 cut(s) 432
XapI RAATTY 1 cut(s) 239
XmaI CCCGGG 1 cut(s) 48
XspI CTAG 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.