Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0007193

Physical Location & Seq

Genomic Coordinates Forward (+)

60359016 .. 60366020

Gene Structure 7005 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG404800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGCAGGAGGGCAGGCATGCTGATATGAATCCCGAGCCTTACAGAAATTCAACTCTTTTCGTTGTTAGGCATTCTTACAGAAATCTCTCACATGAAGAGATGATGGATTCCATCAGCATAATAGGTGGTGATATTACCCGACCTGTGTGTTCATGGGGAACGATAGGTGTATCTCCCATGAAGATCACATCAGTCACATTCCTGGGTACTGCTGCCAGCGCATGTAAAAGTGCAGATTTGGTCGGAGAATTCCTTGATCACCAATTCGTACTCACGTTCCCGTTTGAGAGGTTGAGGGTGATGGAAAGCGAAGAGGACCCTGTGAAGAAGACTCAAGTGGTGGATGCCCGGGCTAGAAATATCAGTCATAATGTTAGGTGCACTGAGTGTGGGAGTCAGTCCATTGAGGATTCACAAGCTGATATCGCCATTCTTCTTAGAAAGTTAATTCGTGACGAGATTCATGCTGGGAAGAGTGACAAGGAGATCTACAAGAAGCTTGAGGAGGATTTTGGGGAGACGGTACTTTATGCCCCAAAATTTGATGTGCAGACTGCAGGCCTATGGCTATCACCGCTTGTGGTTGCCGGTGCTGCTGCAGGTATTTGGGCTTATAAGAAGCACAGACAAAGGACTAACGTCCACGTCATGGCTTTGAACCTTATTAGAGGCGTTCCACTGACCCCAAATGAGAAGAAAACCATGTTAGACCTCCTCACACCGCCATCTTCACGAGGAAATATACCTTCATCTTGGTGGAGGTGGAGAGAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0007275 GO:0008150 GO:0008152 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016020 GO:0016043 GO:0016491 GO:0017004 GO:0019866 GO:0022414 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CcmH

Protein Analysis

258

Amino Acids

29.09

Weight (kDa)

7.09

Isoelectric Point (pI)

52.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CcmH	PF03918	100 - 238	3.3e-29	Cytochrome C biogenesis protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15220 AT1G15220
fragaria_vesca	FvH4_6g31840
malus_domestica	MD17G1190700.v1.1
prunus_persica	Prupe.6G357100_v2.0.a1 Prupe.6G357100_v2.0.a1 Prupe.6G357100_v2.0.a1
pyrus_communis	pycom17g19790
rosa_chinensis	RchiOBHm_Chr2g0139101 RchiOBHm_Chr2g0139151
rosa_laevigata	RLG00000019791
rosa_multiflora	Rmu_sc0001803.1_g000023 Rmu_sc0001803.1_g000031 Rmu_sc0006014.1_g000018 Rmu_sc0014249.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105620
rosa_rugosa	Rorug02G0354800 Rorug02G0355100
rosa_samantha	Rh2AG404800 Rh2BG415300 Rh2CG391100 Rh2DG424600 Rh2DG425000
rosa_wichuraiana	Rw2G033070 Rw2G033090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	615
Acc36I	ACCTGC	1 cut(s)	590
AccB7I	CCANNNNNTGG	1 cut(s)	649
AciI	CCGC	2 cut(s)	575, 722
AcsI	RAATTY	3 cut(s)	46, 248, 539
AdeI	CACNNNGTG	1 cut(s)	387
AfaI	GTAC	3 cut(s)	208, 270, 525
AfiI	CCNNNNNNNGG	1 cut(s)	649
AgsI	TTSAA	2 cut(s)	51, 658
AjiI	CACGTC	1 cut(s)	646
AjnI	CCWGG	1 cut(s)	201
AluBI	AGCT	2 cut(s)	419, 499
AluI	AGCT	2 cut(s)	419, 499
Alw21I	GWGCWC	1 cut(s)	383
Alw26I	GTCTC	1 cut(s)	512
Alw44I	GTGCAC	1 cut(s)	379
Ama87I	CYCGRG	2 cut(s)	32, 348
AoxI	GGCC	1 cut(s)	559
ApaLI	GTGCAC	1 cut(s)	379
ApeKI	GCWGC	3 cut(s)	212, 593, 596
ApoI	RAATTY	3 cut(s)	46, 248, 539
AspLEI	GCGC	1 cut(s)	221
AspS9I	GGNCC	1 cut(s)	316
AsuC2I	CCSGG	2 cut(s)	349, 350
AsuHPI	GGTGA	4 cut(s)	140, 251, 310, 564
AvaI	CYCGRG	2 cut(s)	32, 348
AvaII	GGWCC	1 cut(s)	316
BaeGI	GKGCMC	1 cut(s)	383
BauI	CACGAG	1 cut(s)	732
BbsI	GAAGAC	1 cut(s)	335
Bbv12I	GWGCWC	1 cut(s)	383
BbvI	GCAGC	3 cut(s)	199, 580, 583
BccI	CCATC	4 cut(s)	97, 119, 295, 733
BcgI	CGANNNNNNTGC	2 cut(s)	446, 480
BciT130I	CCWGG	1 cut(s)	203
BclI	TGATCA	1 cut(s)	256
BcnI	CCSGG	2 cut(s)	349, 350
BcoDI	GTCTC	1 cut(s)	512
BfaI	CTAG	1 cut(s)	354
BfmI	CTRYAG	2 cut(s)	555, 597
BfuAI	ACCTGC	1 cut(s)	590
BglII	AGATCT	1 cut(s)	486
BisI	GCNGC	3 cut(s)	213, 594, 597
BlsI	GCNGC	3 cut(s)	214, 595, 598
Bme1390I	CCNGG	3 cut(s)	203, 349, 350
Bme18I	GGWCC	1 cut(s)	316
BmeT110I	CYCGRG	2 cut(s)	32, 348
BmgBI	CACGTC	1 cut(s)	646
BmgT120I	GGNCC	1 cut(s)	316
BmiI	GGNNCC	1 cut(s)	318
BmrFI	CCNGG	3 cut(s)	203, 349, 350
BmsI	GCATC	1 cut(s)	334
BoxI	GACNNNNGTC	1 cut(s)	638
BpiI	GAAGAC	1 cut(s)	335
BpuEI	CTTGAG	2 cut(s)	318, 521
BpuMI	CCSGG	2 cut(s)	349, 350
BsaBI	GATNNNNATC	1 cut(s)	27
BsaJI	CCNNGG	2 cut(s)	202, 348
Bsc4I	CCNNNNNNNGG	1 cut(s)	649
Bse118I	RCCGGY	1 cut(s)	587
Bse8I	GATNNNNATC	1 cut(s)	27
BseBI	CCWGG	1 cut(s)	203
BseDI	CCNNGG	2 cut(s)	202, 348
BseGI	GGATG	1 cut(s)	349
BseJI	GATNNNNATC	1 cut(s)	27
BseLI	CCNNNNNNNGG	1 cut(s)	649
BseMII	CTCAG	1 cut(s)	375
BseRI	GAGGAG	2 cut(s)	518, 704
BseSI	GKGCMC	1 cut(s)	383
BseXI	GCAGC	3 cut(s)	199, 580, 583
BseYI	CCCAGC	1 cut(s)	467
BsgI	GTGCAG	2 cut(s)	252, 569
BshFI	GGCC	1 cut(s)	561
BsiHKAI	GWGCWC	1 cut(s)	383
BsiHKCI	CYCGRG	2 cut(s)	32, 348
BsiSI	CCGG	2 cut(s)	349, 588
BslI	CCNNNNNNNGG	1 cut(s)	649
BsmAI	GTCTC	1 cut(s)	512
BsmBI	CGTCTC	1 cut(s)	512
BsmI	GAATGC	1 cut(s)	70
BsnI	GGCC	1 cut(s)	561
BsoBI	CYCGRG	2 cut(s)	32, 348
Bsp1286I	GDGCHC	1 cut(s)	383
Bsp143I	GATC	3 cut(s)	183, 256, 486
BspACI	CCGC	2 cut(s)	575, 722
BspANI	GGCC	1 cut(s)	561
BspCNI	CTCAG	1 cut(s)	376
BspLI	GGNNCC	1 cut(s)	318
BspMAI	CTGCAG	2 cut(s)	559, 601
BspMI	ACCTGC	1 cut(s)	590
BsrFI	RCCGGY	1 cut(s)	587
BssAI	RCCGGY	1 cut(s)	587
BssECI	CCNNGG	2 cut(s)	202, 348
BssMI	GATC	3 cut(s)	183, 256, 486
BssSI	CACGAG	1 cut(s)	732
Bst2BI	CACGAG	1 cut(s)	732
Bst2UI	CCWGG	1 cut(s)	203
Bst4CI	ACNGT	1 cut(s)	523
Bst6I	CTCTTC	3 cut(s)	90, 306, 467
BstC8I	GCNNGC	4 cut(s)	14, 18, 217, 559
BstDEI	CTNAG	2 cut(s)	384, 437
BstF5I	GGATG	1 cut(s)	349
BstHHI	GCGC	1 cut(s)	221
BstKTI	GATC	3 cut(s)	186, 259, 489
BstMAI	GTCTC	1 cut(s)	512
BstMBI	GATC	3 cut(s)	183, 256, 486
BstMWI	GCNNNNNNNGC	4 cut(s)	218, 425, 574, 593
BstNI	CCWGG	1 cut(s)	203
BstNSI	RCATGY	2 cut(s)	20, 225
BstPAI	GACNNNNGTC	1 cut(s)	638
BstSCI	CCNGG	3 cut(s)	201, 347, 348
BstSFI	CTRYAG	2 cut(s)	555, 597
BstSLI	GKGCMC	1 cut(s)	383
BstV1I	GCAGC	3 cut(s)	199, 580, 583
BstV2I	GAAGAC	1 cut(s)	335
BstX2I	RGATCY	1 cut(s)	486
BstYI	RGATCY	1 cut(s)	486
BsuRI	GGCC	1 cut(s)	561
BtrI	CACGTC	1 cut(s)	646
BtsCI	GGATG	1 cut(s)	349
BtsIMutI	CAGTG	2 cut(s)	381, 677
BveI	ACCTGC	1 cut(s)	590
Cac8I	GCNNGC	4 cut(s)	14, 18, 217, 559
CfoI	GCGC	1 cut(s)	221
Cfr10I	RCCGGY	1 cut(s)	587
Cfr13I	GGNCC	1 cut(s)	316
Cfr9I	CCCGGG	1 cut(s)	348
Csp6I	GTAC	3 cut(s)	207, 269, 524
CviAII	CATG	8 cut(s)	17, 92, 153, 178, 222, 464, 649, 703
CviJI	RGCY	8 cut(s)	37, 353, 419, 499, 561, 568, 611, 653
CviKI_1	RGCY	8 cut(s)	37, 353, 419, 499, 561, 568, 611, 653
CviQI	GTAC	3 cut(s)	207, 269, 524
DdeI	CTNAG	2 cut(s)	384, 437
DpnI	GATC	3 cut(s)	185, 258, 488
DpnII	GATC	3 cut(s)	183, 256, 486
DraIII	CACNNNGTG	1 cut(s)	387
Eam1104I	CTCTTC	3 cut(s)	90, 306, 467
EarI	CTCTTC	3 cut(s)	90, 306, 467
Eco147I	AGGCCT	1 cut(s)	561
Eco32I	GATATC	1 cut(s)	424
Eco47I	GGWCC	1 cut(s)	316
Eco88I	CYCGRG	2 cut(s)	32, 348
EcoO109I	RGGNCCY	1 cut(s)	316
EcoRI	GAATTC	1 cut(s)	248
EcoRII	CCWGG	1 cut(s)	201
EcoRV	GATATC	1 cut(s)	424
Esp3I	CGTCTC	1 cut(s)	512
FaeI	CATG	8 cut(s)	20, 95, 156, 181, 225, 467, 652, 706
FatI	CATG	8 cut(s)	16, 91, 152, 177, 221, 463, 648, 702
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	3 cut(s)	213, 594, 597
FokI	GGATG	1 cut(s)	356
Fsp4HI	GCNGC	3 cut(s)	213, 594, 597
FspBI	CTAG	1 cut(s)	354
GlaI	GCGC	1 cut(s)	220
GluI	GCNGC	3 cut(s)	213, 594, 597
GsaI	CCCAGC	1 cut(s)	471
HaeIII	GGCC	1 cut(s)	561
HapII	CCGG	2 cut(s)	349, 588
HhaI	GCGC	1 cut(s)	221
Hin1II	CATG	8 cut(s)	20, 95, 156, 181, 225, 467, 652, 706
Hin6I	GCGC	1 cut(s)	219
HinP1I	GCGC	1 cut(s)	219
HindIII	AAGCTT	1 cut(s)	497
HinfI	GANTC	6 cut(s)	28, 107, 331, 394, 410, 460
HpaII	CCGG	2 cut(s)	349, 588
HphI	GGTGA	4 cut(s)	140, 251, 310, 564
Hpy166II	GTNNAC	2 cut(s)	381, 643
Hpy188I	TCNGA	1 cut(s)	245
Hpy188III	TCNNGA	3 cut(s)	32, 452, 732
Hpy8I	GTNNAC	2 cut(s)	381, 643
HpyAV	CCTTC	1 cut(s)	756
HpyCH4III	ACNGT	1 cut(s)	523
HpyCH4IV	ACGT	3 cut(s)	275, 639, 645
HpyCH4V	TGCA	6 cut(s)	4, 233, 381, 550, 557, 599
HpyF10VI	GCNNNNNNNGC	4 cut(s)	218, 425, 574, 593
HpyF3I	CTNAG	2 cut(s)	384, 437
HpySE526I	ACGT	3 cut(s)	275, 639, 645
Hsp92II	CATG	8 cut(s)	20, 95, 156, 181, 225, 467, 652, 706
HspAI	GCGC	1 cut(s)	219
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	3 cut(s)	183, 256, 486
Lsp1109I	GCAGC	3 cut(s)	199, 580, 583
LweI	GCATC	1 cut(s)	334
MaeI	CTAG	1 cut(s)	354
MaeII	ACGT	3 cut(s)	275, 639, 645
MaeIII	GTNAC	3 cut(s)	193, 452, 476
MalI	GATC	3 cut(s)	185, 258, 488
MboI	GATC	3 cut(s)	183, 256, 486
MboII	GAAGA	9 cut(s)	107, 193, 323, 337, 340, 425, 484, 706, 720
MflI	RGATCY	1 cut(s)	486
MhlI	GDGCHC	1 cut(s)	383
MluCI	AATT	5 cut(s)	46, 248, 263, 447, 539
MlyI	GAGTC	2 cut(s)	325, 403
MmeI	TCCRAC	1 cut(s)	223
MseI	TTAA	1 cut(s)	446
MslI	CAYNNNNRTG	1 cut(s)	754
MspI	CCGG	2 cut(s)	349, 588
MspR9I	CCNGG	3 cut(s)	203, 349, 350
Mva1269I	GAATGC	1 cut(s)	70
MvaI	CCWGG	1 cut(s)	203
MwoI	GCNNNNNNNGC	4 cut(s)	218, 425, 574, 593
NciI	CCSGG	2 cut(s)	349, 350
NdeII	GATC	3 cut(s)	183, 256, 486
NlaIII	CATG	8 cut(s)	20, 95, 156, 181, 225, 467, 652, 706
NlaIV	GGNNCC	1 cut(s)	318
NmuCI	GTSAC	3 cut(s)	193, 452, 476
NspI	RCATGY	2 cut(s)	20, 225
PaeI	GCATGC	1 cut(s)	20
PceI	AGGCCT	1 cut(s)	561
PctI	GAATGC	1 cut(s)	70
PfeI	GAWTC	4 cut(s)	28, 107, 410, 460
PflMI	CCANNNNNTGG	1 cut(s)	649
PkrI	GCNGC	3 cut(s)	214, 595, 598
PleI	GAGTC	2 cut(s)	325, 402
PpsI	GAGTC	2 cut(s)	325, 402
PpuMI	RGGWCCY	1 cut(s)	316
PshAI	GACNNNNGTC	1 cut(s)	638
PsiI	TTATAA	1 cut(s)	615
Psp5II	RGGWCCY	1 cut(s)	316
Psp6I	CCWGG	1 cut(s)	201
PspFI	CCCAGC	1 cut(s)	467
PspGI	CCWGG	1 cut(s)	201
PspN4I	GGNNCC	1 cut(s)	318
PspPI	GGNCC	1 cut(s)	316
PspPPI	RGGWCCY	1 cut(s)	316
PstI	CTGCAG	2 cut(s)	559, 601
PsuI	RGATCY	1 cut(s)	486
RsaI	GTAC	3 cut(s)	208, 270, 525
RsaNI	GTAC	3 cut(s)	207, 269, 524
RseI	CAYNNNNRTG	1 cut(s)	754
SaqAI	TTAA	1 cut(s)	446
SatI	GCNGC	3 cut(s)	213, 594, 597
Sau3AI	GATC	3 cut(s)	183, 256, 486
Sau96I	GGNCC	1 cut(s)	316
SchI	GAGTC	2 cut(s)	325, 403
ScrFI	CCNGG	3 cut(s)	203, 349, 350
SduI	GDGCHC	1 cut(s)	383
SfaNI	GCATC	1 cut(s)	334
SfcI	CTRYAG	2 cut(s)	555, 597
SinI	GGWCC	1 cut(s)	316
SmaI	CCCGGG	1 cut(s)	350
SmiMI	CAYNNNNRTG	1 cut(s)	754
SmlI	CTYRAG	2 cut(s)	333, 500
SmoI	CTYRAG	2 cut(s)	333, 500
SphI	GCATGC	1 cut(s)	20
SrfI	GCCCGGGC	1 cut(s)	350
Sse9I	AATT	5 cut(s)	46, 248, 263, 447, 539
SseBI	AGGCCT	1 cut(s)	561
SsiI	CCGC	2 cut(s)	575, 722
SspMI	CTAG	1 cut(s)	354
StuI	AGGCCT	1 cut(s)	561
StyD4I	CCNGG	3 cut(s)	201, 347, 348
TaaI	ACNGT	1 cut(s)	523
TaiI	ACGT	3 cut(s)	278, 642, 648
TasI	AATT	5 cut(s)	46, 248, 263, 447, 539
TfiI	GAWTC	4 cut(s)	28, 107, 410, 460
Tru1I	TTAA	1 cut(s)	446
Tru9I	TTAA	1 cut(s)	446
TscAI	CASTG	2 cut(s)	388, 684
TseFI	GTSAC	3 cut(s)	193, 452, 476
TseI	GCWGC	3 cut(s)	212, 593, 596
Tsp45I	GTSAC	3 cut(s)	193, 452, 476
TspDTI	ATGAA	6 cut(s)	41, 108, 141, 194, 452, 738
TspMI	CCCGGG	1 cut(s)	348
TspRI	CASTG	2 cut(s)	388, 684
Van91I	CCANNNNNTGG	1 cut(s)	649
VneI	GTGCAC	1 cut(s)	379
VpaK11BI	GGWCC	1 cut(s)	316
XapI	RAATTY	3 cut(s)	46, 248, 539
XceI	RCATGY	2 cut(s)	20, 225
XmaI	CCCGGG	1 cut(s)	348
XspI	CTAG	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.