Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0007193

Physical Location & Seq

Genomic Coordinates Forward (+)

30276780 .. 30279166

Gene Structure 2387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G357100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGGAAGCGAAGAGGACCCGGTGAAGAAGACTCAGGTGGTGAATGCCCGGGCTCAAAACATTAGTCACAATGTTCGGTGCACTGAGTGTGGAAGCCAGTCCATTGAAGATTCACAAGCAGATATTGCCATCTTGCTTAGAAAGTTAATTCGTGATGAGATTCATGCTGGGAAGAGTGACAAAGAGATTTATAAGAAGCTTGAAGAGGATTTTGGGGAGACGGTACTTTATGCCCCAAAGTTTGATATGCAGACTGCAGCCTTGTGGCTATCACCGCTTCTGGTTGCTGGTGCTGCTGCAGGAATTTGGGCTTATAAAAAGCACAGGCAAAAGACTAATGTCCACATCATGGCGCTGAACCTTGTTAGAGGTGTTCCATTAACCCCAAATGAGAAGCAAACCATGTTAGACCTCCTCACACCGCCGCCTTCACGAGGAAATATTCCTTCCTCGTGGTGGAGGAGGTGGAGAGAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0007275 GO:0008150 GO:0008152 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016020 GO:0016043 GO:0016491 GO:0017004 GO:0019866 GO:0022414 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CcmH

Protein Analysis

160

Amino Acids

18.0

Weight (kDa)

8.91

Isoelectric Point (pI)

69.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15220 AT1G15220
fragaria_vesca	FvH4_6g31840
malus_domestica	MD17G1190700.v1.1
prunus_persica	Prupe.6G357100_v2.0.a1 Prupe.6G357100_v2.0.a1 Prupe.6G357100_v2.0.a1
pyrus_communis	pycom17g19790
rosa_chinensis	RchiOBHm_Chr2g0139101 RchiOBHm_Chr2g0139151
rosa_laevigata	RLG00000019791
rosa_multiflora	Rmu_sc0001803.1_g000023 Rmu_sc0001803.1_g000031 Rmu_sc0006014.1_g000018 Rmu_sc0014249.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105620
rosa_rugosa	Rorug02G0354800 Rorug02G0355100
rosa_samantha	Rh2AG404800 Rh2BG415300 Rh2CG391100 Rh2DG424600 Rh2DG425000
rosa_wichuraiana	Rw2G033070 Rw2G033090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	192, 315
AccB7I	CCANNNNNTGG	1 cut(s)	349
AciI	CCGC	3 cut(s)	275, 422, 425
AcsI	RAATTY	1 cut(s)	303
AdeI	CACNNNGTG	1 cut(s)	87
AfaI	GTAC	1 cut(s)	225
AfiI	CCNNNNNNNGG	3 cut(s)	349, 434, 456
AgsI	TTSAA	2 cut(s)	107, 203
AjuI	GAANNNNNNNTTGG	2 cut(s)	195, 227
AluBI	AGCT	1 cut(s)	199
AluI	AGCT	1 cut(s)	199
Alw21I	GWGCWC	1 cut(s)	83
Alw26I	GTCTC	1 cut(s)	212
Alw44I	GTGCAC	1 cut(s)	79
Ama87I	CYCGRG	1 cut(s)	48
ApaLI	GTGCAC	1 cut(s)	79
ApeKI	GCWGC	3 cut(s)	257, 293, 296
ApoI	RAATTY	1 cut(s)	303
ArsI	GACNNNNNNTTYG	2 cut(s)	49, 81
AspLEI	GCGC	1 cut(s)	355
AspS9I	GGNCC	1 cut(s)	16
AsuC2I	CCSGG	3 cut(s)	20, 49, 50
AsuHPI	GGTGA	3 cut(s)	34, 52, 264
AvaI	CYCGRG	1 cut(s)	48
AvaII	GGWCC	1 cut(s)	16
BaeGI	GKGCMC	1 cut(s)	83
BanII	GRGCYC	1 cut(s)	55
BauI	CACGAG	2 cut(s)	432, 451
BbsI	GAAGAC	1 cut(s)	35
Bbv12I	GWGCWC	1 cut(s)	83
BbvI	GCAGC	3 cut(s)	269, 280, 283
BccI	CCATC	1 cut(s)	137
BcnI	CCSGG	3 cut(s)	20, 49, 50
BcoDI	GTCTC	1 cut(s)	212
BfmI	CTRYAG	2 cut(s)	255, 297
BfoI	RGCGCY	1 cut(s)	356
BisI	GCNGC	4 cut(s)	258, 294, 297, 425
BlsI	GCNGC	4 cut(s)	259, 295, 298, 426
Bme1390I	CCNGG	3 cut(s)	20, 49, 50
Bme18I	GGWCC	1 cut(s)	16
BmeT110I	CYCGRG	1 cut(s)	48
BmgT120I	GGNCC	1 cut(s)	16
BmiI	GGNNCC	1 cut(s)	18
BmrFI	CCNGG	3 cut(s)	20, 49, 50
BoxI	GACNNNNGTC	1 cut(s)	338
BpiI	GAAGAC	1 cut(s)	35
BpuMI	CCSGG	3 cut(s)	20, 49, 50
BsaJI	CCNNGG	1 cut(s)	48
Bsc4I	CCNNNNNNNGG	3 cut(s)	349, 434, 456
Bse1I	ACTGG	1 cut(s)	97
BseDI	CCNNGG	1 cut(s)	48
BseLI	CCNNNNNNNGG	3 cut(s)	349, 434, 456
BseMII	CTCAG	2 cut(s)	47, 75
BseNI	ACTGG	1 cut(s)	97
BseRI	GAGGAG	2 cut(s)	404, 475
BseSI	GKGCMC	1 cut(s)	83
BseXI	GCAGC	3 cut(s)	269, 280, 283
BseYI	CCCAGC	1 cut(s)	167
BsiHKAI	GWGCWC	1 cut(s)	83
BsiHKCI	CYCGRG	1 cut(s)	48
BsiSI	CCGG	2 cut(s)	20, 49
BslI	CCNNNNNNNGG	3 cut(s)	349, 434, 456
BsmAI	GTCTC	1 cut(s)	212
BsmBI	CGTCTC	1 cut(s)	212
BsmI	GAATGC	1 cut(s)	49
BsoBI	CYCGRG	1 cut(s)	48
Bsp1286I	GDGCHC	2 cut(s)	55, 83
BspACI	CCGC	3 cut(s)	275, 422, 425
BspCNI	CTCAG	2 cut(s)	46, 76
BspLI	GGNNCC	1 cut(s)	18
BspMAI	CTGCAG	2 cut(s)	259, 301
BsrI	ACTGG	1 cut(s)	97
BssECI	CCNNGG	1 cut(s)	48
BssSI	CACGAG	2 cut(s)	432, 451
Bst2BI	CACGAG	2 cut(s)	432, 451
Bst4CI	ACNGT	1 cut(s)	223
Bst6I	CTCTTC	3 cut(s)	6, 167, 198
BstAPI	GCANNNNNTGC	1 cut(s)	125
BstDEI	CTNAG	3 cut(s)	33, 84, 137
BstENI	CCTNNNNNAGG	1 cut(s)	432
BstH2I	RGCGCY	1 cut(s)	356
BstHHI	GCGC	1 cut(s)	355
BstMAI	GTCTC	1 cut(s)	212
BstMWI	GCNNNNNNNGC	3 cut(s)	125, 274, 293
BstPAI	GACNNNNGTC	1 cut(s)	338
BstSCI	CCNGG	3 cut(s)	18, 47, 48
BstSFI	CTRYAG	2 cut(s)	255, 297
BstSLI	GKGCMC	1 cut(s)	83
BstV1I	GCAGC	3 cut(s)	269, 280, 283
BstV2I	GAAGAC	1 cut(s)	35
BtsIMutI	CAGTG	1 cut(s)	81
CfoI	GCGC	1 cut(s)	355
Cfr13I	GGNCC	1 cut(s)	16
Cfr9I	CCCGGG	1 cut(s)	48
Csp6I	GTAC	1 cut(s)	224
CviAII	CATG	3 cut(s)	164, 349, 403
CviJI	RGCY	6 cut(s)	53, 96, 199, 260, 268, 311
CviKI_1	RGCY	6 cut(s)	53, 96, 199, 260, 268, 311
CviQI	GTAC	1 cut(s)	224
DdeI	CTNAG	3 cut(s)	33, 84, 137
DraIII	CACNNNGTG	1 cut(s)	87
Eam1104I	CTCTTC	3 cut(s)	6, 167, 198
EarI	CTCTTC	3 cut(s)	6, 167, 198
Eco24I	GRGCYC	1 cut(s)	55
Eco47I	GGWCC	1 cut(s)	16
Eco88I	CYCGRG	1 cut(s)	48
EcoNI	CCTNNNNNAGG	1 cut(s)	432
EcoO109I	RGGNCCY	1 cut(s)	16
EcoT38I	GRGCYC	1 cut(s)	55
Esp3I	CGTCTC	1 cut(s)	212
FaeI	CATG	3 cut(s)	167, 352, 406
FaiI	YATR	7 cut(s)	165, 192, 231, 248, 315, 350, 404
FatI	CATG	3 cut(s)	163, 348, 402
Fnu4HI	GCNGC	4 cut(s)	258, 294, 297, 425
FriOI	GRGCYC	1 cut(s)	55
Fsp4HI	GCNGC	4 cut(s)	258, 294, 297, 425
GlaI	GCGC	1 cut(s)	354
GluI	GCNGC	4 cut(s)	258, 294, 297, 425
GsaI	CCCAGC	1 cut(s)	171
HaeII	RGCGCY	1 cut(s)	356
HapII	CCGG	2 cut(s)	20, 49
HhaI	GCGC	1 cut(s)	355
Hin1II	CATG	3 cut(s)	167, 352, 406
Hin6I	GCGC	1 cut(s)	353
HinP1I	GCGC	1 cut(s)	353
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	3 cut(s)	31, 110, 160
HpaII	CCGG	2 cut(s)	20, 49
HphI	GGTGA	3 cut(s)	34, 52, 264
Hpy166II	GTNNAC	2 cut(s)	81, 343
Hpy188III	TCNNGA	2 cut(s)	152, 432
Hpy8I	GTNNAC	2 cut(s)	81, 343
HpyAV	CCTTC	2 cut(s)	438, 456
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4V	TGCA	4 cut(s)	81, 250, 257, 299
HpyF10VI	GCNNNNNNNGC	3 cut(s)	125, 274, 293
HpyF3I	CTNAG	3 cut(s)	33, 84, 137
Hsp92II	CATG	3 cut(s)	167, 352, 406
HspAI	GCGC	1 cut(s)	353
LpnPI	CCDG	9 cut(s)	20, 33, 62, 110, 153, 266, 273, 285, 310
Lsp1109I	GCAGC	3 cut(s)	269, 280, 283
MaeIII	GTNAC	2 cut(s)	65, 176
MboII	GAAGA	6 cut(s)	23, 37, 40, 119, 184, 215
MhlI	GDGCHC	2 cut(s)	55, 83
MluCI	AATT	2 cut(s)	147, 303
MlyI	GAGTC	1 cut(s)	25
MnlI	CCTC	9 cut(s)	7, 199, 362, 422, 425, 428, 453, 456, 460
MseI	TTAA	2 cut(s)	146, 380
MspI	CCGG	2 cut(s)	20, 49
MspR9I	CCNGG	3 cut(s)	20, 49, 50
Mva1269I	GAATGC	1 cut(s)	49
MwoI	GCNNNNNNNGC	3 cut(s)	125, 274, 293
NciI	CCSGG	3 cut(s)	20, 49, 50
NlaIII	CATG	3 cut(s)	167, 352, 406
NlaIV	GGNNCC	1 cut(s)	18
NmuCI	GTSAC	2 cut(s)	65, 176
PctI	GAATGC	1 cut(s)	49
PfeI	GAWTC	2 cut(s)	110, 160
PflMI	CCANNNNNTGG	1 cut(s)	349
PkrI	GCNGC	4 cut(s)	259, 295, 298, 426
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
PpuMI	RGGWCCY	1 cut(s)	16
PshAI	GACNNNNGTC	1 cut(s)	338
PsiI	TTATAA	2 cut(s)	192, 315
Psp5II	RGGWCCY	1 cut(s)	16
PspFI	CCCAGC	1 cut(s)	167
PspN4I	GGNNCC	1 cut(s)	18
PspPI	GGNCC	1 cut(s)	16
PspPPI	RGGWCCY	1 cut(s)	16
PstI	CTGCAG	2 cut(s)	259, 301
RsaI	GTAC	1 cut(s)	225
RsaNI	GTAC	1 cut(s)	224
SaqAI	TTAA	2 cut(s)	146, 380
SatI	GCNGC	4 cut(s)	258, 294, 297, 425
Sau96I	GGNCC	1 cut(s)	16
SchI	GAGTC	1 cut(s)	25
ScrFI	CCNGG	3 cut(s)	20, 49, 50
SduI	GDGCHC	2 cut(s)	55, 83
SetI	ASST	6 cut(s)	39, 201, 363, 373, 414, 467
SfcI	CTRYAG	2 cut(s)	255, 297
SinI	GGWCC	1 cut(s)	16
SmaI	CCCGGG	1 cut(s)	50
SrfI	GCCCGGGC	1 cut(s)	50
Sse9I	AATT	2 cut(s)	147, 303
SsiI	CCGC	3 cut(s)	275, 422, 425
SspI	AATATT	1 cut(s)	442
StyD4I	CCNGG	3 cut(s)	18, 47, 48
TaaI	ACNGT	1 cut(s)	223
TasI	AATT	2 cut(s)	147, 303
TauI	GCSGC	1 cut(s)	427
TfiI	GAWTC	2 cut(s)	110, 160
Tru1I	TTAA	2 cut(s)	146, 380
Tru9I	TTAA	2 cut(s)	146, 380
TscAI	CASTG	1 cut(s)	88
TseFI	GTSAC	2 cut(s)	65, 176
TseI	GCWGC	3 cut(s)	257, 293, 296
Tsp45I	GTSAC	2 cut(s)	65, 176
TspDTI	ATGAA	1 cut(s)	152
TspMI	CCCGGG	1 cut(s)	48
TspRI	CASTG	1 cut(s)	88
Van91I	CCANNNNNTGG	1 cut(s)	349
VneI	GTGCAC	1 cut(s)	79
VpaK11BI	GGWCC	1 cut(s)	16
XagI	CCTNNNNNAGG	1 cut(s)	432
XapI	RAATTY	1 cut(s)	303
XmaI	CCCGGG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.