Rh2BG415300

Cytochrome c-type biogenesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0007193
Physical Location & Seq
Forward (+)
58683747 .. 58706431
22685 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG415300.1

Sequence Viewer

Length: 357 bp
ATGCATTTGATAATTGTGCAGTTAATTCGTGACGAGATTCATGCTGGGAAGAGTGACAAGGAGATCTACAAGAAGCTTGAGGAGGATTTTGGGGAGACGGTACTTTATGCCCCAAAATTTGATCTGCAGACTGCAGGCTTATGGCTATCACCGCTTGTGGTTGCAGGTGCTGCTGCAGGTATTTGGGCTTATAAGAAGCACAGACAAAGGACTAACGTCCACGTCATGGCTTTGAACCTTATTAGAGGTGTTCCACTGACCCCAAATGAGAAGCAAACCATGTTAGACCTCCTCACACCGCCACCTTCACGAGGAAATATACCTTCATCTTGGTGGAGGAGGTGGAGAGAACAATGA

Protein Analysis

118

Amino Acids

13.57

Weight (kDa)

9.57

Isoelectric Point (pI)

58.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CcmH PF03918 7 - 97 1.2e-14 Cytochrome C biogenesis protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 192
AarI CACCTGC 1 cut(s) 155
Acc36I ACCTGC 2 cut(s) 155, 167
AccB7I CCANNNNNTGG 1 cut(s) 226
AciI CCGC 2 cut(s) 152, 299
AcsI RAATTY 1 cut(s) 116
AfaI GTAC 1 cut(s) 102
AfiI CCNNNNNNNGG 2 cut(s) 226, 311
AgsI TTSAA 1 cut(s) 235
AjiI CACGTC 1 cut(s) 223
AluBI AGCT 1 cut(s) 76
AluI AGCT 1 cut(s) 76
Alw26I GTCTC 1 cut(s) 89
AlwNI CAGNNNCTG 1 cut(s) 170
ApeKI GCWGC 2 cut(s) 170, 173
ApoI RAATTY 1 cut(s) 116
AsuHPI GGTGA 1 cut(s) 141
BauI CACGAG 1 cut(s) 309
BbvI GCAGC 2 cut(s) 157, 160
BcgI CGANNNNNNTGC 4 cut(s) 8, 23, 42, 57
BcoDI GTCTC 1 cut(s) 89
BfmI CTRYAG 3 cut(s) 125, 132, 174
BfuAI ACCTGC 2 cut(s) 155, 167
BglII AGATCT 1 cut(s) 63
BisI GCNGC 2 cut(s) 171, 174
BlsI GCNGC 2 cut(s) 172, 175
BmgBI CACGTC 1 cut(s) 223
BoxI GACNNNNGTC 1 cut(s) 215
BpuEI CTTGAG 1 cut(s) 98
Bsc4I CCNNNNNNNGG 2 cut(s) 226, 311
BseLI CCNNNNNNNGG 2 cut(s) 226, 311
BseRI GAGGAG 3 cut(s) 95, 281, 352
BseXI GCAGC 2 cut(s) 157, 160
BseYI CCCAGC 1 cut(s) 44
BsgI GTGCAG 1 cut(s) 38
BslI CCNNNNNNNGG 2 cut(s) 226, 311
BsmAI GTCTC 1 cut(s) 89
BsmBI CGTCTC 1 cut(s) 89
Bsp143I GATC 2 cut(s) 63, 121
BspACI CCGC 2 cut(s) 152, 299
BspMAI CTGCAG 3 cut(s) 129, 136, 178
BspMI ACCTGC 2 cut(s) 155, 167
BssMI GATC 2 cut(s) 63, 121
BssSI CACGAG 1 cut(s) 309
Bst2BI CACGAG 1 cut(s) 309
Bst4CI ACNGT 1 cut(s) 100
Bst6I CTCTTC 1 cut(s) 44
BstAPI GCANNNNNTGC 1 cut(s) 170
BstC8I GCNNGC 1 cut(s) 136
BstENI CCTNNNNNAGG 1 cut(s) 309
BstKTI GATC 2 cut(s) 66, 124
BstMAI GTCTC 1 cut(s) 89
BstMBI GATC 2 cut(s) 63, 121
BstMWI GCNNNNNNNGC 2 cut(s) 151, 170
BstPAI GACNNNNGTC 1 cut(s) 215
BstSFI CTRYAG 3 cut(s) 125, 132, 174
BstV1I GCAGC 2 cut(s) 157, 160
BstX2I RGATCY 1 cut(s) 63
BstYI RGATCY 1 cut(s) 63
BtrI CACGTC 1 cut(s) 223
BtsIMutI CAGTG 1 cut(s) 254
BveI ACCTGC 2 cut(s) 155, 167
Cac8I GCNNGC 1 cut(s) 136
CaiI CAGNNNCTG 1 cut(s) 170
Csp6I GTAC 1 cut(s) 101
CviAII CATG 3 cut(s) 41, 226, 280
CviJI RGCY 5 cut(s) 76, 138, 145, 188, 230
CviKI_1 RGCY 5 cut(s) 76, 138, 145, 188, 230
CviQI GTAC 1 cut(s) 101
DpnI GATC 2 cut(s) 65, 123
DpnII GATC 2 cut(s) 63, 121
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
EcoNI CCTNNNNNAGG 1 cut(s) 309
EcoT22I ATGCAT 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 89
FaeI CATG 3 cut(s) 44, 229, 283
FaiI YATR 7 cut(s) 42, 108, 142, 192, 227, 281, 320
FatI CATG 3 cut(s) 40, 225, 279
Fnu4HI GCNGC 2 cut(s) 171, 174
Fsp4HI GCNGC 2 cut(s) 171, 174
GluI GCNGC 2 cut(s) 171, 174
GsaI CCCAGC 1 cut(s) 48
Hin1II CATG 3 cut(s) 44, 229, 283
HindIII AAGCTT 1 cut(s) 74
HinfI GANTC 1 cut(s) 37
HphI GGTGA 1 cut(s) 141
Hpy166II GTNNAC 1 cut(s) 220
Hpy188III TCNNGA 2 cut(s) 29, 309
Hpy8I GTNNAC 1 cut(s) 220
HpyAV CCTTC 2 cut(s) 315, 333
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4IV ACGT 2 cut(s) 216, 222
HpyCH4V TGCA 6 cut(s) 4, 19, 127, 134, 164, 176
HpyF10VI GCNNNNNNNGC 2 cut(s) 151, 170
HpySE526I ACGT 2 cut(s) 216, 222
Hsp92II CATG 3 cut(s) 44, 229, 283
Kzo9I GATC 2 cut(s) 63, 121
LpnPI CCDG 4 cut(s) 30, 120, 150, 162
Lsp1109I GCAGC 2 cut(s) 157, 160
MaeII ACGT 2 cut(s) 216, 222
MaeIII GTNAC 2 cut(s) 29, 53
MalI GATC 2 cut(s) 65, 123
MboI GATC 2 cut(s) 63, 121
MboII GAAGA 1 cut(s) 61
MflI RGATCY 1 cut(s) 63
MluCI AATT 3 cut(s) 12, 24, 116
MnlI CCTC 8 cut(s) 73, 76, 239, 299, 302, 305, 330, 333
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 23
MslI CAYNNNNRTG 1 cut(s) 331
MwoI GCNNNNNNNGC 2 cut(s) 151, 170
NdeII GATC 2 cut(s) 63, 121
NlaIII CATG 3 cut(s) 44, 229, 283
NmuCI GTSAC 2 cut(s) 29, 53
NsiI ATGCAT 1 cut(s) 6
PaqCI CACCTGC 1 cut(s) 155
PfeI GAWTC 1 cut(s) 37
PflMI CCANNNNNTGG 1 cut(s) 226
PkrI GCNGC 2 cut(s) 172, 175
PshAI GACNNNNGTC 1 cut(s) 215
PsiI TTATAA 1 cut(s) 192
PspFI CCCAGC 1 cut(s) 44
PstI CTGCAG 3 cut(s) 129, 136, 178
PstNI CAGNNNCTG 1 cut(s) 170
PsuI RGATCY 1 cut(s) 63
RsaI GTAC 1 cut(s) 102
RsaNI GTAC 1 cut(s) 101
RseI CAYNNNNRTG 1 cut(s) 331
SaqAI TTAA 1 cut(s) 23
SatI GCNGC 2 cut(s) 171, 174
Sau3AI GATC 2 cut(s) 63, 121
SfcI CTRYAG 3 cut(s) 125, 132, 174
SmiMI CAYNNNNRTG 1 cut(s) 331
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
Sse9I AATT 3 cut(s) 12, 24, 116
SsiI CCGC 2 cut(s) 152, 299
TaaI ACNGT 1 cut(s) 100
TaiI ACGT 2 cut(s) 219, 225
TasI AATT 3 cut(s) 12, 24, 116
TfiI GAWTC 1 cut(s) 37
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TscAI CASTG 1 cut(s) 261
TseFI GTSAC 2 cut(s) 29, 53
TseI GCWGC 2 cut(s) 170, 173
Tsp45I GTSAC 2 cut(s) 29, 53
TspDTI ATGAA 2 cut(s) 29, 315
TspRI CASTG 1 cut(s) 261
Van91I CCANNNNNTGG 1 cut(s) 226
XagI CCTNNNNNAGG 1 cut(s) 309
XapI RAATTY 1 cut(s) 116
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.