Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0007193

Physical Location & Seq

Genomic Coordinates Reverse (-)

29049441 .. 29052981

Gene Structure 3541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00105620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGCTTTTCGTCAAACAGGTGCTAAGTTGTTTGAGAGGTTGAGGGTGATGGAAAGCGAAGAGGACCCTGTGAAGAAGACTCAAGTGGTGGATGCCCGGGCTAGAAATATCAGTCATAATGTTAGGTGCACTGAGTGTGGGAGTCAGTCCATTGAGGATTCACAAGCTGATATCGCCATTCTTCTTAGAAAGTTAATTCGTGACGAGATTCATGCTGGGAAGAGTGACAAGGAGATCTACAAGAAGCTGGAGGAGGACTTTGGGGAGACGGTACTATATGCCCCAAAATTTGATCTGCAGACTGCAGGCTTATGGCTATCACCGCTTGTGGTTGCCGGTGCTGCTGCAGGTATTTGGGCTTATAAGAAGCACAGACAAAGGACTAACGTCCACGTCATGGCTTTGAACCTTATTAGAGGTGTTCCACTGACCCCAAATGAGAAGCAAACCATGTTAGACCTCCTCACACCGCCACCTTCACGAGGAAATATACCTTCATCTTGGTGGAGGAGGTGGAGAGAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0007275 GO:0008150 GO:0008152 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016020 GO:0016043 GO:0016491 GO:0017004 GO:0019866 GO:0022414 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CcmH

Protein Analysis

175

Amino Acids

19.99

Weight (kDa)

9.33

Isoelectric Point (pI)

66.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CcmH	PF03918	16 - 154	1.2e-29	Cytochrome C biogenesis protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15220 AT1G15220
fragaria_vesca	FvH4_6g31840
malus_domestica	MD17G1190700.v1.1
prunus_persica	Prupe.6G357100_v2.0.a1 Prupe.6G357100_v2.0.a1 Prupe.6G357100_v2.0.a1
pyrus_communis	pycom17g19790
rosa_chinensis	RchiOBHm_Chr2g0139101 RchiOBHm_Chr2g0139151
rosa_laevigata	RLG00000019791
rosa_multiflora	Rmu_sc0001803.1_g000023 Rmu_sc0001803.1_g000031 Rmu_sc0006014.1_g000018 Rmu_sc0014249.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105620
rosa_rugosa	Rorug02G0354800 Rorug02G0355100
rosa_samantha	Rh2AG404800 Rh2BG415300 Rh2CG391100 Rh2DG424600 Rh2DG425000
rosa_wichuraiana	Rw2G033070 Rw2G033090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	363
Acc36I	ACCTGC	1 cut(s)	338
AccB7I	CCANNNNNTGG	1 cut(s)	397
AciI	CCGC	2 cut(s)	323, 470
AcsI	RAATTY	1 cut(s)	287
AdeI	CACNNNGTG	1 cut(s)	135
AfaI	GTAC	1 cut(s)	273
AfiI	CCNNNNNNNGG	2 cut(s)	397, 482
AgsI	TTSAA	1 cut(s)	406
AjiI	CACGTC	1 cut(s)	394
AluBI	AGCT	2 cut(s)	167, 247
AluI	AGCT	2 cut(s)	167, 247
Alw21I	GWGCWC	1 cut(s)	131
Alw26I	GTCTC	1 cut(s)	260
Alw44I	GTGCAC	1 cut(s)	127
Ama87I	CYCGRG	1 cut(s)	96
ApaLI	GTGCAC	1 cut(s)	127
ApeKI	GCWGC	2 cut(s)	341, 344
ApoI	RAATTY	1 cut(s)	287
AspS9I	GGNCC	1 cut(s)	64
AsuC2I	CCSGG	2 cut(s)	97, 98
AsuHPI	GGTGA	2 cut(s)	58, 312
AvaI	CYCGRG	1 cut(s)	96
AvaII	GGWCC	1 cut(s)	64
BaeGI	GKGCMC	1 cut(s)	131
BauI	CACGAG	1 cut(s)	480
BbsI	GAAGAC	1 cut(s)	83
Bbv12I	GWGCWC	1 cut(s)	131
BbvI	GCAGC	2 cut(s)	328, 331
BccI	CCATC	1 cut(s)	43
BcgI	CGANNNNNNTGC	2 cut(s)	194, 228
BcnI	CCSGG	2 cut(s)	97, 98
BcoDI	GTCTC	1 cut(s)	260
BfaI	CTAG	1 cut(s)	102
BfmI	CTRYAG	3 cut(s)	296, 303, 345
BfuAI	ACCTGC	1 cut(s)	338
BglII	AGATCT	1 cut(s)	234
BisI	GCNGC	2 cut(s)	342, 345
BlsI	GCNGC	2 cut(s)	343, 346
Bme1390I	CCNGG	2 cut(s)	97, 98
Bme18I	GGWCC	1 cut(s)	64
BmeT110I	CYCGRG	1 cut(s)	96
BmgBI	CACGTC	1 cut(s)	394
BmgT120I	GGNCC	1 cut(s)	64
BmiI	GGNNCC	1 cut(s)	66
BmrFI	CCNGG	2 cut(s)	97, 98
BmsI	GCATC	1 cut(s)	82
BoxI	GACNNNNGTC	1 cut(s)	386
BpiI	GAAGAC	1 cut(s)	83
BpmI	CTGGAG	1 cut(s)	269
BpuEI	CTTGAG	1 cut(s)	66
BpuMI	CCSGG	2 cut(s)	97, 98
BsaJI	CCNNGG	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	2 cut(s)	397, 482
Bse118I	RCCGGY	1 cut(s)	335
BseDI	CCNNGG	1 cut(s)	96
BseGI	GGATG	1 cut(s)	97
BseLI	CCNNNNNNNGG	2 cut(s)	397, 482
BseMII	CTCAG	1 cut(s)	123
BseRI	GAGGAG	3 cut(s)	266, 452, 523
BseSI	GKGCMC	1 cut(s)	131
BseXI	GCAGC	2 cut(s)	328, 331
BseYI	CCCAGC	1 cut(s)	215
BsiHKAI	GWGCWC	1 cut(s)	131
BsiHKCI	CYCGRG	1 cut(s)	96
BsiSI	CCGG	2 cut(s)	97, 336
BslI	CCNNNNNNNGG	2 cut(s)	397, 482
BsmAI	GTCTC	1 cut(s)	260
BsmBI	CGTCTC	1 cut(s)	260
BsoBI	CYCGRG	1 cut(s)	96
Bsp1286I	GDGCHC	1 cut(s)	131
Bsp143I	GATC	2 cut(s)	234, 292
BspACI	CCGC	2 cut(s)	323, 470
BspCNI	CTCAG	1 cut(s)	124
BspLI	GGNNCC	1 cut(s)	66
BspMAI	CTGCAG	3 cut(s)	300, 307, 349
BspMI	ACCTGC	1 cut(s)	338
BsrFI	RCCGGY	1 cut(s)	335
BssAI	RCCGGY	1 cut(s)	335
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	2 cut(s)	234, 292
BssSI	CACGAG	1 cut(s)	480
Bst2BI	CACGAG	1 cut(s)	480
Bst4CI	ACNGT	1 cut(s)	271
Bst6I	CTCTTC	2 cut(s)	54, 215
BstC8I	GCNNGC	1 cut(s)	307
BstDEI	CTNAG	3 cut(s)	24, 132, 185
BstENI	CCTNNNNNAGG	1 cut(s)	480
BstF5I	GGATG	1 cut(s)	97
BstKTI	GATC	2 cut(s)	237, 295
BstMAI	GTCTC	1 cut(s)	260
BstMBI	GATC	2 cut(s)	234, 292
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 322, 341
BstPAI	GACNNNNGTC	1 cut(s)	386
BstSCI	CCNGG	2 cut(s)	95, 96
BstSFI	CTRYAG	3 cut(s)	296, 303, 345
BstSLI	GKGCMC	1 cut(s)	131
BstV1I	GCAGC	2 cut(s)	328, 331
BstV2I	GAAGAC	1 cut(s)	83
BstX2I	RGATCY	1 cut(s)	234
BstYI	RGATCY	1 cut(s)	234
BtrI	CACGTC	1 cut(s)	394
BtsCI	GGATG	1 cut(s)	97
BtsIMutI	CAGTG	2 cut(s)	129, 425
BveI	ACCTGC	1 cut(s)	338
Cac8I	GCNNGC	1 cut(s)	307
Cfr10I	RCCGGY	1 cut(s)	335
Cfr13I	GGNCC	1 cut(s)	64
Cfr9I	CCCGGG	1 cut(s)	96
Csp6I	GTAC	1 cut(s)	272
CviAII	CATG	3 cut(s)	212, 397, 451
CviJI	RGCY	8 cut(s)	5, 101, 167, 247, 309, 316, 359, 401
CviKI_1	RGCY	8 cut(s)	5, 101, 167, 247, 309, 316, 359, 401
CviQI	GTAC	1 cut(s)	272
DdeI	CTNAG	3 cut(s)	24, 132, 185
DpnI	GATC	2 cut(s)	236, 294
DpnII	GATC	2 cut(s)	234, 292
DraIII	CACNNNGTG	1 cut(s)	135
Eam1104I	CTCTTC	2 cut(s)	54, 215
EarI	CTCTTC	2 cut(s)	54, 215
Eco32I	GATATC	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	64
Eco88I	CYCGRG	1 cut(s)	96
EcoNI	CCTNNNNNAGG	1 cut(s)	480
EcoO109I	RGGNCCY	1 cut(s)	64
EcoRV	GATATC	1 cut(s)	172
Esp3I	CGTCTC	1 cut(s)	260
FaeI	CATG	3 cut(s)	215, 400, 454
FaiI	YATR	9 cut(s)	117, 213, 277, 279, 313, 363, 398, 452, 491
FatI	CATG	3 cut(s)	211, 396, 450
Fnu4HI	GCNGC	2 cut(s)	342, 345
FokI	GGATG	1 cut(s)	104
Fsp4HI	GCNGC	2 cut(s)	342, 345
FspBI	CTAG	1 cut(s)	102
GluI	GCNGC	2 cut(s)	342, 345
GsaI	CCCAGC	1 cut(s)	219
GsuI	CTGGAG	1 cut(s)	269
HapII	CCGG	2 cut(s)	97, 336
Hin1II	CATG	3 cut(s)	215, 400, 454
HinfI	GANTC	4 cut(s)	79, 142, 158, 208
HpaII	CCGG	2 cut(s)	97, 336
HphI	GGTGA	2 cut(s)	58, 312
Hpy166II	GTNNAC	2 cut(s)	129, 391
Hpy188III	TCNNGA	2 cut(s)	200, 480
Hpy8I	GTNNAC	2 cut(s)	129, 391
HpyAV	CCTTC	2 cut(s)	486, 504
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4IV	ACGT	2 cut(s)	387, 393
HpyCH4V	TGCA	4 cut(s)	129, 298, 305, 347
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 322, 341
HpyF3I	CTNAG	3 cut(s)	24, 132, 185
HpySE526I	ACGT	2 cut(s)	387, 393
Hsp92II	CATG	3 cut(s)	215, 400, 454
Kzo9I	GATC	2 cut(s)	234, 292
LpnPI	CCDG	8 cut(s)	3, 81, 110, 201, 233, 291, 333, 349
Lsp1109I	GCAGC	2 cut(s)	328, 331
LweI	GCATC	1 cut(s)	82
MaeI	CTAG	1 cut(s)	102
MaeII	ACGT	2 cut(s)	387, 393
MaeIII	GTNAC	2 cut(s)	200, 224
MalI	GATC	2 cut(s)	236, 294
MboI	GATC	2 cut(s)	234, 292
MboII	GAAGA	5 cut(s)	71, 85, 88, 173, 232
MflI	RGATCY	1 cut(s)	234
MhlI	GDGCHC	1 cut(s)	131
MluCI	AATT	2 cut(s)	195, 287
MlyI	GAGTC	2 cut(s)	73, 151
MseI	TTAA	1 cut(s)	194
MslI	CAYNNNNRTG	1 cut(s)	502
MspI	CCGG	2 cut(s)	97, 336
MspR9I	CCNGG	2 cut(s)	97, 98
MwoI	GCNNNNNNNGC	3 cut(s)	173, 322, 341
NciI	CCSGG	2 cut(s)	97, 98
NdeII	GATC	2 cut(s)	234, 292
NlaIII	CATG	3 cut(s)	215, 400, 454
NlaIV	GGNNCC	1 cut(s)	66
NmuCI	GTSAC	2 cut(s)	200, 224
PfeI	GAWTC	2 cut(s)	158, 208
PflMI	CCANNNNNTGG	1 cut(s)	397
PkrI	GCNGC	2 cut(s)	343, 346
PleI	GAGTC	2 cut(s)	73, 150
PpsI	GAGTC	2 cut(s)	73, 150
PpuMI	RGGWCCY	1 cut(s)	64
PshAI	GACNNNNGTC	1 cut(s)	386
PsiI	TTATAA	1 cut(s)	363
Psp5II	RGGWCCY	1 cut(s)	64
PspFI	CCCAGC	1 cut(s)	215
PspN4I	GGNNCC	1 cut(s)	66
PspPI	GGNCC	1 cut(s)	64
PspPPI	RGGWCCY	1 cut(s)	64
PstI	CTGCAG	3 cut(s)	300, 307, 349
PsuI	RGATCY	1 cut(s)	234
RsaI	GTAC	1 cut(s)	273
RsaNI	GTAC	1 cut(s)	272
RseI	CAYNNNNRTG	1 cut(s)	502
SaqAI	TTAA	1 cut(s)	194
SatI	GCNGC	2 cut(s)	342, 345
Sau3AI	GATC	2 cut(s)	234, 292
Sau96I	GGNCC	1 cut(s)	64
SchI	GAGTC	2 cut(s)	73, 151
ScrFI	CCNGG	2 cut(s)	97, 98
SduI	GDGCHC	1 cut(s)	131
SfaNI	GCATC	1 cut(s)	82
SfcI	CTRYAG	3 cut(s)	296, 303, 345
SinI	GGWCC	1 cut(s)	64
SmaI	CCCGGG	1 cut(s)	98
SmiMI	CAYNNNNRTG	1 cut(s)	502
SmlI	CTYRAG	1 cut(s)	81
SmoI	CTYRAG	1 cut(s)	81
SrfI	GCCCGGGC	1 cut(s)	98
Sse9I	AATT	2 cut(s)	195, 287
SsiI	CCGC	2 cut(s)	323, 470
SspMI	CTAG	1 cut(s)	102
StyD4I	CCNGG	2 cut(s)	95, 96
TaaI	ACNGT	1 cut(s)	271
TaiI	ACGT	2 cut(s)	390, 396
TasI	AATT	2 cut(s)	195, 287
TfiI	GAWTC	2 cut(s)	158, 208
Tru1I	TTAA	1 cut(s)	194
Tru9I	TTAA	1 cut(s)	194
TscAI	CASTG	2 cut(s)	136, 432
TseFI	GTSAC	2 cut(s)	200, 224
TseI	GCWGC	2 cut(s)	341, 344
Tsp45I	GTSAC	2 cut(s)	200, 224
TspDTI	ATGAA	2 cut(s)	200, 486
TspMI	CCCGGG	1 cut(s)	96
TspRI	CASTG	2 cut(s)	136, 432
Van91I	CCANNNNNTGG	1 cut(s)	397
VneI	GTGCAC	1 cut(s)	127
VpaK11BI	GGWCC	1 cut(s)	64
XagI	CCTNNNNNAGG	1 cut(s)	480
XapI	RAATTY	1 cut(s)	287
XmaI	CCCGGG	1 cut(s)	96
XspI	CTAG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.