FvH4_6g31840

Cytochrome c-type biogenesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0007193
Physical Location & Seq
Forward (+)
24929866 .. 24933091
3226 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g31840.t1

Sequence Viewer

Length: 474 bp
ATGGAGGAGGACCCGGTGAAGAAGAGTCAAGTGGTTGATGCCCGCGCCAGAAATATCAGCCATAATGTTAGGTGCACTGAGTGTGGGAGTCAGTCCATTGAAGACTCACAAGCTGATATCGCCATTCTTCTTCGCAAGTTAATTCGTGACGAGATTCATGCTGGGAAGAGTGACAAGGAGATCTACAAGAAGCTTGAGGAGGATTTCGGGGAGACAGTACTTTATGCCCCAAAATTTGATCTGCAGACTGCAGGCTTATGGCTATCACCGCTTGTGGTTGCCGGTGCTGCTGCAGGTATCTGGGCTTATAAGAAGCACAGGCAAAGGACTAACGTCCATGTCATGGCTTTGAACCTTATTAGAGGTGTTCCACTGACCCCAAATGAGAAGCAAACCATGTTAGACCTCCTCACGCCGCCACCTTCAAGAGGAAATGTACCTTCGTCATGGTGGAGGAGGTGGAGAGAACAATGA

Protein Analysis

158

Amino Acids

17.84

Weight (kDa)

8.93

Isoelectric Point (pI)

69.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CcmH PF03918 4 - 136 2.3e-29 Cytochrome C biogenesis protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 309
Acc36I ACCTGC 1 cut(s) 284
AccB7I CCANNNNNTGG 1 cut(s) 343
AccII CGCG 1 cut(s) 45
AciI CCGC 3 cut(s) 43, 269, 416
AcsI RAATTY 1 cut(s) 233
AdeI CACNNNGTG 1 cut(s) 81
AfaI GTAC 2 cut(s) 219, 438
AfiI CCNNNNNNNGG 2 cut(s) 343, 428
AgsI TTSAA 3 cut(s) 101, 352, 426
AluBI AGCT 2 cut(s) 113, 193
AluI AGCT 2 cut(s) 113, 193
Alw21I GWGCWC 1 cut(s) 77
Alw26I GTCTC 1 cut(s) 206
Alw44I GTGCAC 1 cut(s) 73
ApaLI GTGCAC 1 cut(s) 73
ApeKI GCWGC 2 cut(s) 287, 290
ApoI RAATTY 1 cut(s) 233
AspLEI GCGC 1 cut(s) 47
AspS9I GGNCC 1 cut(s) 10
AsuC2I CCSGG 1 cut(s) 14
AsuHPI GGTGA 2 cut(s) 28, 258
AvaII GGWCC 1 cut(s) 10
BaeGI GKGCMC 1 cut(s) 77
BbsI GAAGAC 1 cut(s) 108
Bbv12I GWGCWC 1 cut(s) 77
BbvI GCAGC 2 cut(s) 274, 277
BcgI CGANNNNNNTGC 2 cut(s) 140, 174
BcnI CCSGG 1 cut(s) 14
BcoDI GTCTC 1 cut(s) 206
BfmI CTRYAG 3 cut(s) 242, 249, 291
BfuAI ACCTGC 1 cut(s) 284
BglII AGATCT 1 cut(s) 180
BisI GCNGC 3 cut(s) 288, 291, 416
BlsI GCNGC 3 cut(s) 289, 292, 417
BmcAI AGTACT 1 cut(s) 219
Bme1390I CCNGG 1 cut(s) 14
Bme18I GGWCC 1 cut(s) 10
BmgT120I GGNCC 1 cut(s) 10
BmiI GGNNCC 1 cut(s) 12
BmrFI CCNGG 1 cut(s) 14
BmsI GCATC 1 cut(s) 28
BoxI GACNNNNGTC 1 cut(s) 332
BpiI GAAGAC 1 cut(s) 108
BpuEI CTTGAG 1 cut(s) 215
BpuMI CCSGG 1 cut(s) 14
Bsc4I CCNNNNNNNGG 2 cut(s) 343, 428
Bse118I RCCGGY 1 cut(s) 281
BseLI CCNNNNNNNGG 2 cut(s) 343, 428
BseMII CTCAG 1 cut(s) 69
BseRI GAGGAG 4 cut(s) 20, 212, 398, 469
BseSI GKGCMC 1 cut(s) 77
BseXI GCAGC 2 cut(s) 274, 277
BseYI CCCAGC 1 cut(s) 161
Bsh1236I CGCG 1 cut(s) 45
BsiHKAI GWGCWC 1 cut(s) 77
BsiSI CCGG 2 cut(s) 14, 282
BslI CCNNNNNNNGG 2 cut(s) 343, 428
BsmAI GTCTC 1 cut(s) 206
Bsp1286I GDGCHC 1 cut(s) 77
Bsp143I GATC 2 cut(s) 180, 238
BspACI CCGC 3 cut(s) 43, 269, 416
BspCNI CTCAG 1 cut(s) 70
BspFNI CGCG 1 cut(s) 45
BspLI GGNNCC 1 cut(s) 12
BspMAI CTGCAG 3 cut(s) 246, 253, 295
BspMI ACCTGC 1 cut(s) 284
BsrFI RCCGGY 1 cut(s) 281
BssAI RCCGGY 1 cut(s) 281
BssMI GATC 2 cut(s) 180, 238
Bst4CI ACNGT 1 cut(s) 217
Bst6I CTCTTC 2 cut(s) 17, 161
BstC8I GCNNGC 2 cut(s) 43, 253
BstDEI CTNAG 1 cut(s) 78
BstENI CCTNNNNNAGG 1 cut(s) 426
BstFNI CGCG 1 cut(s) 45
BstHHI GCGC 1 cut(s) 47
BstKTI GATC 2 cut(s) 183, 241
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 2 cut(s) 180, 238
BstMWI GCNNNNNNNGC 3 cut(s) 119, 268, 287
BstPAI GACNNNNGTC 1 cut(s) 332
BstSCI CCNGG 1 cut(s) 12
BstSFI CTRYAG 3 cut(s) 242, 249, 291
BstSLI GKGCMC 1 cut(s) 77
BstUI CGCG 1 cut(s) 45
BstV1I GCAGC 2 cut(s) 274, 277
BstV2I GAAGAC 1 cut(s) 108
BstX2I RGATCY 1 cut(s) 180
BstYI RGATCY 1 cut(s) 180
BtsIMutI CAGTG 2 cut(s) 75, 371
BveI ACCTGC 1 cut(s) 284
Cac8I GCNNGC 2 cut(s) 43, 253
CfoI GCGC 1 cut(s) 47
Cfr10I RCCGGY 1 cut(s) 281
Cfr13I GGNCC 1 cut(s) 10
Csp6I GTAC 2 cut(s) 218, 437
CviAII CATG 5 cut(s) 158, 338, 343, 397, 447
CviJI RGCY 7 cut(s) 60, 113, 193, 255, 262, 305, 347
CviKI_1 RGCY 7 cut(s) 60, 113, 193, 255, 262, 305, 347
CviQI GTAC 2 cut(s) 218, 437
DdeI CTNAG 1 cut(s) 78
DpnI GATC 2 cut(s) 182, 240
DpnII GATC 2 cut(s) 180, 238
DraIII CACNNNGTG 1 cut(s) 81
Eam1104I CTCTTC 2 cut(s) 17, 161
EarI CTCTTC 2 cut(s) 17, 161
Eco32I GATATC 1 cut(s) 118
Eco47I GGWCC 1 cut(s) 10
EcoNI CCTNNNNNAGG 1 cut(s) 426
EcoO109I RGGNCCY 1 cut(s) 10
EcoRV GATATC 1 cut(s) 118
FaeI CATG 5 cut(s) 161, 341, 346, 400, 450
FaiI YATR 9 cut(s) 63, 159, 225, 259, 309, 339, 344, 398, 448
FatI CATG 5 cut(s) 157, 337, 342, 396, 446
FauI CCCGC 1 cut(s) 50
Fnu4HI GCNGC 3 cut(s) 288, 291, 416
Fsp4HI GCNGC 3 cut(s) 288, 291, 416
GlaI GCGC 1 cut(s) 46
GluI GCNGC 3 cut(s) 288, 291, 416
GsaI CCCAGC 1 cut(s) 165
HapII CCGG 2 cut(s) 14, 282
HhaI GCGC 1 cut(s) 47
Hin1II CATG 5 cut(s) 161, 341, 346, 400, 450
Hin6I GCGC 1 cut(s) 45
HinP1I GCGC 1 cut(s) 45
HindIII AAGCTT 1 cut(s) 191
HinfI GANTC 4 cut(s) 25, 88, 104, 154
HpaII CCGG 2 cut(s) 14, 282
HphI GGTGA 2 cut(s) 28, 258
Hpy166II GTNNAC 1 cut(s) 75
Hpy188III TCNNGA 2 cut(s) 146, 426
Hpy8I GTNNAC 1 cut(s) 75
HpyAV CCTTC 2 cut(s) 432, 450
HpyCH4III ACNGT 1 cut(s) 217
HpyCH4IV ACGT 1 cut(s) 333
HpyCH4V TGCA 4 cut(s) 75, 244, 251, 293
HpyF10VI GCNNNNNNNGC 3 cut(s) 119, 268, 287
HpyF3I CTNAG 1 cut(s) 78
HpySE526I ACGT 1 cut(s) 333
Hsp92II CATG 5 cut(s) 161, 341, 346, 400, 450
HspAI GCGC 1 cut(s) 45
Kzo9I GATC 2 cut(s) 180, 238
LpnPI CCDG 8 cut(s) 27, 61, 147, 237, 279, 286, 295, 304
Lsp1109I GCAGC 2 cut(s) 274, 277
LweI GCATC 1 cut(s) 28
MaeII ACGT 1 cut(s) 333
MaeIII GTNAC 2 cut(s) 146, 170
MalI GATC 2 cut(s) 182, 240
MboI GATC 2 cut(s) 180, 238
MboII GAAGA 6 cut(s) 31, 34, 113, 119, 122, 178
MflI RGATCY 1 cut(s) 180
MhlI GDGCHC 1 cut(s) 77
MluCI AATT 2 cut(s) 141, 233
MlyI GAGTC 3 cut(s) 34, 97, 98
MnlI CCTC 8 cut(s) 190, 193, 356, 416, 419, 422, 447, 450
MseI TTAA 1 cut(s) 140
MspI CCGG 2 cut(s) 14, 282
MspR9I CCNGG 1 cut(s) 14
MvnI CGCG 1 cut(s) 45
MwoI GCNNNNNNNGC 3 cut(s) 119, 268, 287
NciI CCSGG 1 cut(s) 14
NdeII GATC 2 cut(s) 180, 238
NlaIII CATG 5 cut(s) 161, 341, 346, 400, 450
NlaIV GGNNCC 1 cut(s) 12
NmuCI GTSAC 2 cut(s) 146, 170
PfeI GAWTC 1 cut(s) 154
PflMI CCANNNNNTGG 1 cut(s) 343
PkrI GCNGC 3 cut(s) 289, 292, 417
PleI GAGTC 3 cut(s) 33, 96, 98
PpsI GAGTC 3 cut(s) 33, 96, 98
PpuMI RGGWCCY 1 cut(s) 10
PshAI GACNNNNGTC 1 cut(s) 332
PsiI TTATAA 1 cut(s) 309
Psp5II RGGWCCY 1 cut(s) 10
PspFI CCCAGC 1 cut(s) 161
PspN4I GGNNCC 1 cut(s) 12
PspPI GGNCC 1 cut(s) 10
PspPPI RGGWCCY 1 cut(s) 10
PstI CTGCAG 3 cut(s) 246, 253, 295
PsuI RGATCY 1 cut(s) 180
RsaI GTAC 2 cut(s) 219, 438
RsaNI GTAC 2 cut(s) 218, 437
SaqAI TTAA 1 cut(s) 140
SatI GCNGC 3 cut(s) 288, 291, 416
Sau3AI GATC 2 cut(s) 180, 238
Sau96I GGNCC 1 cut(s) 10
ScaI AGTACT 1 cut(s) 219
SchI GAGTC 3 cut(s) 34, 97, 98
ScrFI CCNGG 1 cut(s) 14
SduI GDGCHC 1 cut(s) 77
SfaNI GCATC 1 cut(s) 28
SfcI CTRYAG 3 cut(s) 242, 249, 291
SinI GGWCC 1 cut(s) 10
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
Sse9I AATT 2 cut(s) 141, 233
SsiI CCGC 3 cut(s) 43, 269, 416
StyD4I CCNGG 1 cut(s) 12
TaaI ACNGT 1 cut(s) 217
TaiI ACGT 1 cut(s) 336
TasI AATT 2 cut(s) 141, 233
TatI WGTACW 1 cut(s) 217
TauI GCSGC 1 cut(s) 418
TfiI GAWTC 1 cut(s) 154
Tru1I TTAA 1 cut(s) 140
Tru9I TTAA 1 cut(s) 140
TscAI CASTG 2 cut(s) 82, 378
TseFI GTSAC 2 cut(s) 146, 170
TseI GCWGC 2 cut(s) 287, 290
Tsp45I GTSAC 2 cut(s) 146, 170
TspDTI ATGAA 1 cut(s) 146
TspRI CASTG 2 cut(s) 82, 378
Van91I CCANNNNNTGG 1 cut(s) 343
VneI GTGCAC 1 cut(s) 73
VpaK11BI GGWCC 1 cut(s) 10
XagI CCTNNNNNAGG 1 cut(s) 426
XapI RAATTY 1 cut(s) 233
ZrmI AGTACT 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.