Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0007193

Physical Location & Seq

Genomic Coordinates Forward (+)

53332788 .. 53339792

Gene Structure 7005 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG391100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGCAGGAGGGCAGGCATGCTGATATGAATCCCGAGCCTTACAGAAATTCAACTCTTTTCGTTGTTAGGCATTCTTACAGAAATCTCTCACATGAAGAGATGATGGATTCCATCAGCATAATAGGTGGTGATATTACCCGACCTGTGTGTTCATGGGGAACGATAGGTGTATCTCCCATGAAGATCACATCAGTCACATTCCTGGGTACTGCTGCCAGCGCATGTAAAAGTGCAGATTTGGTGTGTAAAGCAACAAAGGATACACGAGAAGAATATGAAGCACAAGTTCAACACTATCCTAGATTACTTGGTCAGGCTGGTAGCCGCACAGAAAATTTCTACCATCACAGTTTCTTCATTTCCCTCTTTACATTTACTCCTTCATTCACTACGCCAAAGGTCGGAGAATTCCTTGATCACCAATTCGTACTCACGTTCCCGTTTGAGAGGTTGAGGGTGATGGAAAGCGAAGAGGACCCTGTGAAGAAGACTCAAGTGGTGGATGCCCGGGCTAGAAATATCAGTCATAATGTTAGGTGCACTGAGTGTGGGAGTCAGTCCATTGAGGATTCACAAGCTGATATCGCCATTCTTCTTAGAAAGTTAATTCGTGACGAGATTCATGCTGGGAAGAGTGACAAGGAGATCTACAAGAAGCTTGAGGAGGATTTTGGGGAGACGGTACTTTATGCCCCAAAATTTGATGTGCAGACTGCAGGCCTATGGCTATCACCGCTTGTGGTTGCCGGTGCTGCTGCAGGTATTTGGGCTTATAAGAAGCACAGACAAAGGACTAACGTCCACGTCATGGCTTTGAACCTTATTAGAGGCGTTCCACTGACCCCAAATGAGAAGAAAACCATGTTAGACCTCCTCACACCGCCATCTTCACGAGGAAATATACCTTCATCTTGGTGGAGGTGGAGAGAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0007275 GO:0008150 GO:0008152 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016020 GO:0016043 GO:0016491 GO:0017004 GO:0019866 GO:0022414 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CcmH

Protein Analysis

311

Amino Acids

35.29

Weight (kDa)

7.71

Isoelectric Point (pI)

49.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CcmH	PF03918	153 - 291	5.3e-29	Cytochrome C biogenesis protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15220 AT1G15220
fragaria_vesca	FvH4_6g31840
malus_domestica	MD17G1190700.v1.1
prunus_persica	Prupe.6G357100_v2.0.a1 Prupe.6G357100_v2.0.a1 Prupe.6G357100_v2.0.a1
pyrus_communis	pycom17g19790
rosa_chinensis	RchiOBHm_Chr2g0139101 RchiOBHm_Chr2g0139151
rosa_laevigata	RLG00000019791
rosa_multiflora	Rmu_sc0001803.1_g000023 Rmu_sc0001803.1_g000031 Rmu_sc0006014.1_g000018 Rmu_sc0014249.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105620
rosa_rugosa	Rorug02G0354800 Rorug02G0355100
rosa_samantha	Rh2AG404800 Rh2BG415300 Rh2CG391100 Rh2DG424600 Rh2DG425000
rosa_wichuraiana	Rw2G033070 Rw2G033090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	774
Acc36I	ACCTGC	1 cut(s)	749
AccB7I	CCANNNNNTGG	1 cut(s)	808
AciI	CCGC	3 cut(s)	325, 734, 881
AcsI	RAATTY	4 cut(s)	46, 334, 407, 698
AdeI	CACNNNGTG	1 cut(s)	546
AfaI	GTAC	3 cut(s)	208, 429, 684
AfiI	CCNNNNNNNGG	2 cut(s)	401, 808
AgsI	TTSAA	3 cut(s)	51, 290, 817
AjiI	CACGTC	1 cut(s)	805
AjnI	CCWGG	1 cut(s)	201
AluBI	AGCT	2 cut(s)	578, 658
AluI	AGCT	2 cut(s)	578, 658
Alw21I	GWGCWC	1 cut(s)	542
Alw26I	GTCTC	1 cut(s)	671
Alw44I	GTGCAC	1 cut(s)	538
Ama87I	CYCGRG	2 cut(s)	32, 507
AoxI	GGCC	1 cut(s)	718
ApaLI	GTGCAC	1 cut(s)	538
ApeKI	GCWGC	3 cut(s)	212, 752, 755
ApoI	RAATTY	4 cut(s)	46, 334, 407, 698
AspLEI	GCGC	1 cut(s)	221
AspS9I	GGNCC	1 cut(s)	475
AsuC2I	CCSGG	2 cut(s)	508, 509
AsuHPI	GGTGA	4 cut(s)	140, 410, 469, 723
AvaI	CYCGRG	2 cut(s)	32, 507
AvaII	GGWCC	1 cut(s)	475
BaeGI	GKGCMC	1 cut(s)	542
BauI	CACGAG	2 cut(s)	264, 891
BbsI	GAAGAC	1 cut(s)	494
Bbv12I	GWGCWC	1 cut(s)	542
BbvI	GCAGC	3 cut(s)	199, 739, 742
BccI	CCATC	5 cut(s)	97, 119, 351, 454, 892
BcgI	CGANNNNNNTGC	2 cut(s)	605, 639
BciT130I	CCWGG	1 cut(s)	203
BciVI	GTATCC	1 cut(s)	253
BclI	TGATCA	1 cut(s)	415
BcnI	CCSGG	2 cut(s)	508, 509
BcoDI	GTCTC	1 cut(s)	671
BfaI	CTAG	2 cut(s)	300, 513
BfmI	CTRYAG	2 cut(s)	714, 756
BfuAI	ACCTGC	1 cut(s)	749
BfuI	GTATCC	1 cut(s)	253
BglII	AGATCT	1 cut(s)	645
BisI	GCNGC	4 cut(s)	213, 325, 753, 756
BlsI	GCNGC	4 cut(s)	214, 326, 754, 757
Bme1390I	CCNGG	3 cut(s)	203, 508, 509
Bme18I	GGWCC	1 cut(s)	475
BmeT110I	CYCGRG	2 cut(s)	32, 507
BmgBI	CACGTC	1 cut(s)	805
BmgT120I	GGNCC	1 cut(s)	475
BmiI	GGNNCC	1 cut(s)	477
BmrFI	CCNGG	3 cut(s)	203, 508, 509
BmsI	GCATC	1 cut(s)	493
BoxI	GACNNNNGTC	1 cut(s)	797
BpiI	GAAGAC	1 cut(s)	494
BpuEI	CTTGAG	2 cut(s)	477, 680
BpuMI	CCSGG	2 cut(s)	508, 509
BsaBI	GATNNNNATC	1 cut(s)	27
BsaJI	CCNNGG	2 cut(s)	202, 507
BsaXI	ACNNNNNCTCC	2 cut(s)	361, 391
Bsc4I	CCNNNNNNNGG	2 cut(s)	401, 808
Bse118I	RCCGGY	1 cut(s)	746
Bse8I	GATNNNNATC	1 cut(s)	27
BseBI	CCWGG	1 cut(s)	203
BseDI	CCNNGG	2 cut(s)	202, 507
BseGI	GGATG	1 cut(s)	508
BseJI	GATNNNNATC	1 cut(s)	27
BseLI	CCNNNNNNNGG	2 cut(s)	401, 808
BseMII	CTCAG	1 cut(s)	534
BseRI	GAGGAG	2 cut(s)	677, 863
BseSI	GKGCMC	1 cut(s)	542
BseXI	GCAGC	3 cut(s)	199, 739, 742
BseYI	CCCAGC	1 cut(s)	626
BsgI	GTGCAG	2 cut(s)	252, 728
BshFI	GGCC	1 cut(s)	720
BsiHKAI	GWGCWC	1 cut(s)	542
BsiHKCI	CYCGRG	2 cut(s)	32, 507
BsiSI	CCGG	2 cut(s)	508, 747
BslI	CCNNNNNNNGG	2 cut(s)	401, 808
BsmAI	GTCTC	1 cut(s)	671
BsmBI	CGTCTC	1 cut(s)	671
BsmI	GAATGC	1 cut(s)	70
BsnI	GGCC	1 cut(s)	720
BsoBI	CYCGRG	2 cut(s)	32, 507
Bsp1286I	GDGCHC	1 cut(s)	542
Bsp143I	GATC	3 cut(s)	183, 415, 645
BspACI	CCGC	3 cut(s)	325, 734, 881
BspANI	GGCC	1 cut(s)	720
BspCNI	CTCAG	1 cut(s)	535
BspLI	GGNNCC	1 cut(s)	477
BspMAI	CTGCAG	2 cut(s)	718, 760
BspMI	ACCTGC	1 cut(s)	749
BsrFI	RCCGGY	1 cut(s)	746
BssAI	RCCGGY	1 cut(s)	746
BssECI	CCNNGG	2 cut(s)	202, 507
BssMI	GATC	3 cut(s)	183, 415, 645
BssSI	CACGAG	2 cut(s)	264, 891
Bst2BI	CACGAG	2 cut(s)	264, 891
Bst2UI	CCWGG	1 cut(s)	203
Bst4CI	ACNGT	2 cut(s)	350, 682
Bst6I	CTCTTC	3 cut(s)	90, 465, 626
BstC8I	GCNNGC	4 cut(s)	14, 18, 217, 718
BstDEI	CTNAG	2 cut(s)	543, 596
BstF5I	GGATG	1 cut(s)	508
BstHHI	GCGC	1 cut(s)	221
BstKTI	GATC	3 cut(s)	186, 418, 648
BstMAI	GTCTC	1 cut(s)	671
BstMBI	GATC	3 cut(s)	183, 415, 645
BstMWI	GCNNNNNNNGC	4 cut(s)	218, 584, 733, 752
BstNI	CCWGG	1 cut(s)	203
BstNSI	RCATGY	2 cut(s)	20, 225
BstPAI	GACNNNNGTC	1 cut(s)	797
BstSCI	CCNGG	3 cut(s)	201, 506, 507
BstSFI	CTRYAG	2 cut(s)	714, 756
BstSLI	GKGCMC	1 cut(s)	542
BstV1I	GCAGC	3 cut(s)	199, 739, 742
BstV2I	GAAGAC	1 cut(s)	494
BstX2I	RGATCY	1 cut(s)	645
BstYI	RGATCY	1 cut(s)	645
BsuI	GTATCC	1 cut(s)	253
BsuRI	GGCC	1 cut(s)	720
BtrI	CACGTC	1 cut(s)	805
BtsCI	GGATG	1 cut(s)	508
BtsIMutI	CAGTG	2 cut(s)	540, 836
BveI	ACCTGC	1 cut(s)	749
Cac8I	GCNNGC	4 cut(s)	14, 18, 217, 718
CfoI	GCGC	1 cut(s)	221
Cfr10I	RCCGGY	1 cut(s)	746
Cfr13I	GGNCC	1 cut(s)	475
Cfr9I	CCCGGG	1 cut(s)	507
Csp6I	GTAC	3 cut(s)	207, 428, 683
CviAII	CATG	8 cut(s)	17, 92, 153, 178, 222, 623, 808, 862
CviQI	GTAC	3 cut(s)	207, 428, 683
DdeI	CTNAG	2 cut(s)	543, 596
DpnI	GATC	3 cut(s)	185, 417, 647
DpnII	GATC	3 cut(s)	183, 415, 645
DraIII	CACNNNGTG	1 cut(s)	546
Eam1104I	CTCTTC	3 cut(s)	90, 465, 626
EarI	CTCTTC	3 cut(s)	90, 465, 626
Eco147I	AGGCCT	1 cut(s)	720
Eco32I	GATATC	1 cut(s)	583
Eco47I	GGWCC	1 cut(s)	475
Eco88I	CYCGRG	2 cut(s)	32, 507
EcoO109I	RGGNCCY	1 cut(s)	475
EcoRI	GAATTC	1 cut(s)	407
EcoRII	CCWGG	1 cut(s)	201
EcoRV	GATATC	1 cut(s)	583
Esp3I	CGTCTC	1 cut(s)	671
FaeI	CATG	8 cut(s)	20, 95, 156, 181, 225, 626, 811, 865
FatI	CATG	8 cut(s)	16, 91, 152, 177, 221, 622, 807, 861
FbaI	TGATCA	1 cut(s)	415
Fnu4HI	GCNGC	4 cut(s)	213, 325, 753, 756
FokI	GGATG	1 cut(s)	515
Fsp4HI	GCNGC	4 cut(s)	213, 325, 753, 756
FspBI	CTAG	2 cut(s)	300, 513
GlaI	GCGC	1 cut(s)	220
GluI	GCNGC	4 cut(s)	213, 325, 753, 756
GsaI	CCCAGC	1 cut(s)	630
HaeIII	GGCC	1 cut(s)	720
HapII	CCGG	2 cut(s)	508, 747
HhaI	GCGC	1 cut(s)	221
Hin1II	CATG	8 cut(s)	20, 95, 156, 181, 225, 626, 811, 865
Hin6I	GCGC	1 cut(s)	219
HinP1I	GCGC	1 cut(s)	219
HindIII	AAGCTT	1 cut(s)	656
HinfI	GANTC	6 cut(s)	28, 107, 490, 553, 569, 619
HpaII	CCGG	2 cut(s)	508, 747
HphI	GGTGA	4 cut(s)	140, 410, 469, 723
Hpy166II	GTNNAC	2 cut(s)	540, 802
Hpy188I	TCNGA	1 cut(s)	404
Hpy188III	TCNNGA	3 cut(s)	32, 611, 891
Hpy8I	GTNNAC	2 cut(s)	540, 802
HpyAV	CCTTC	2 cut(s)	390, 915
HpyCH4III	ACNGT	2 cut(s)	350, 682
HpyCH4IV	ACGT	3 cut(s)	434, 798, 804
HpyCH4V	TGCA	6 cut(s)	4, 233, 540, 709, 716, 758
HpyF10VI	GCNNNNNNNGC	4 cut(s)	218, 584, 733, 752
HpyF3I	CTNAG	2 cut(s)	543, 596
HpySE526I	ACGT	3 cut(s)	434, 798, 804
Hsp92II	CATG	8 cut(s)	20, 95, 156, 181, 225, 626, 811, 865
HspAI	GCGC	1 cut(s)	219
Ksp22I	TGATCA	1 cut(s)	415
Kzo9I	GATC	3 cut(s)	183, 415, 645
Lsp1109I	GCAGC	3 cut(s)	199, 739, 742
LweI	GCATC	1 cut(s)	493
MaeI	CTAG	2 cut(s)	300, 513
MaeII	ACGT	3 cut(s)	434, 798, 804
MaeIII	GTNAC	3 cut(s)	193, 611, 635
MalI	GATC	3 cut(s)	185, 417, 647
MboI	GATC	3 cut(s)	183, 415, 645
MflI	RGATCY	1 cut(s)	645
MhlI	GDGCHC	1 cut(s)	542
MluCI	AATT	6 cut(s)	46, 334, 407, 422, 606, 698
MlyI	GAGTC	2 cut(s)	484, 562
MmeI	TCCRAC	1 cut(s)	382
MseI	TTAA	1 cut(s)	605
MslI	CAYNNNNRTG	1 cut(s)	913
MspI	CCGG	2 cut(s)	508, 747
MspR9I	CCNGG	3 cut(s)	203, 508, 509
Mva1269I	GAATGC	1 cut(s)	70
MvaI	CCWGG	1 cut(s)	203
MwoI	GCNNNNNNNGC	4 cut(s)	218, 584, 733, 752
NciI	CCSGG	2 cut(s)	508, 509
NdeII	GATC	3 cut(s)	183, 415, 645
NlaIII	CATG	8 cut(s)	20, 95, 156, 181, 225, 626, 811, 865
NlaIV	GGNNCC	1 cut(s)	477
NmuCI	GTSAC	3 cut(s)	193, 611, 635
NspI	RCATGY	2 cut(s)	20, 225
PaeI	GCATGC	1 cut(s)	20
PceI	AGGCCT	1 cut(s)	720
PctI	GAATGC	1 cut(s)	70
PfeI	GAWTC	4 cut(s)	28, 107, 569, 619
PflMI	CCANNNNNTGG	1 cut(s)	808
PkrI	GCNGC	4 cut(s)	214, 326, 754, 757
PleI	GAGTC	2 cut(s)	484, 561
PpsI	GAGTC	2 cut(s)	484, 561
PpuMI	RGGWCCY	1 cut(s)	475
PshAI	GACNNNNGTC	1 cut(s)	797
PsiI	TTATAA	1 cut(s)	774
Psp5II	RGGWCCY	1 cut(s)	475
Psp6I	CCWGG	1 cut(s)	201
PspFI	CCCAGC	1 cut(s)	626
PspGI	CCWGG	1 cut(s)	201
PspN4I	GGNNCC	1 cut(s)	477
PspPI	GGNCC	1 cut(s)	475
PspPPI	RGGWCCY	1 cut(s)	475
PstI	CTGCAG	2 cut(s)	718, 760
PsuI	RGATCY	1 cut(s)	645
RsaI	GTAC	3 cut(s)	208, 429, 684
RsaNI	GTAC	3 cut(s)	207, 428, 683
RseI	CAYNNNNRTG	1 cut(s)	913
SaqAI	TTAA	1 cut(s)	605
SatI	GCNGC	4 cut(s)	213, 325, 753, 756
Sau3AI	GATC	3 cut(s)	183, 415, 645
Sau96I	GGNCC	1 cut(s)	475
SchI	GAGTC	2 cut(s)	484, 562
ScrFI	CCNGG	3 cut(s)	203, 508, 509
SduI	GDGCHC	1 cut(s)	542
SfaNI	GCATC	1 cut(s)	493
SfcI	CTRYAG	2 cut(s)	714, 756
SinI	GGWCC	1 cut(s)	475
SmaI	CCCGGG	1 cut(s)	509
SmiMI	CAYNNNNRTG	1 cut(s)	913
SmlI	CTYRAG	2 cut(s)	492, 659
SmoI	CTYRAG	2 cut(s)	492, 659
SphI	GCATGC	1 cut(s)	20
SrfI	GCCCGGGC	1 cut(s)	509
Sse9I	AATT	6 cut(s)	46, 334, 407, 422, 606, 698
SseBI	AGGCCT	1 cut(s)	720
SsiI	CCGC	3 cut(s)	325, 734, 881
SspMI	CTAG	2 cut(s)	300, 513
StuI	AGGCCT	1 cut(s)	720
StyD4I	CCNGG	3 cut(s)	201, 506, 507
TaaI	ACNGT	2 cut(s)	350, 682
TaiI	ACGT	3 cut(s)	437, 801, 807
TasI	AATT	6 cut(s)	46, 334, 407, 422, 606, 698
TauI	GCSGC	1 cut(s)	327
TfiI	GAWTC	4 cut(s)	28, 107, 569, 619
Tru1I	TTAA	1 cut(s)	605
Tru9I	TTAA	1 cut(s)	605
TscAI	CASTG	2 cut(s)	547, 843
TseFI	GTSAC	3 cut(s)	193, 611, 635
TseI	GCWGC	3 cut(s)	212, 752, 755
Tsp45I	GTSAC	3 cut(s)	193, 611, 635
TspDTI	ATGAA	9 cut(s)	41, 108, 141, 194, 291, 346, 372, 611, 897
TspMI	CCCGGG	1 cut(s)	507
TspRI	CASTG	2 cut(s)	547, 843
Van91I	CCANNNNNTGG	1 cut(s)	808
VneI	GTGCAC	1 cut(s)	538
VpaK11BI	GGWCC	1 cut(s)	475
XapI	RAATTY	4 cut(s)	46, 334, 407, 698
XceI	RCATGY	2 cut(s)	20, 225
XmaI	CCCGGG	1 cut(s)	507
XspI	CTAG	2 cut(s)	300, 513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.