Rh2DG425000

Cytochrome c-type biogenesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0007193
Physical Location & Seq
Forward (+)
61583070 .. 61583549
480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG425000.1

Sequence Viewer

Length: 384 bp
ATGCATTCGATAATTGTGCAGTTAATTCGTGATGAGATTCATGCTGGGAAGAGTGACAAGGAGATCTACAAGAAGTTGGAGGAGGACTTTGGGGAGATGGTAATTTATGCCCCAAAATTTGATCTGCAGATTGCATGCTTATGGCTATCACCGCTTGTGGTTGTCGGTGCTACTACAGGTATTTGGGCTTATAAGCACAGACAAAGGACTAACGTCCACGTCATGGCTTTGAACCTTATTAGAGATGTTCCACTAACCCCAAATGAGAAGCAAACCATGTTAGACCTCCTCACACTGCCACCTTCACGAGGAAATATACCTTCGTCTTGGTGGAGGAGGTGGAGAGACAATGATGACCCGTCTTCCATAGACTTTCTTTCTTGA

Protein Analysis

127

Amino Acids

14.71

Weight (kDa)

6.4

Isoelectric Point (pI)

60.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CcmH PF03918 7 - 96 2.2e-13 Cytochrome C biogenesis protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 192
AccB7I CCANNNNNTGG 1 cut(s) 223
AciI CCGC 1 cut(s) 152
AcsI RAATTY 1 cut(s) 116
AfiI CCNNNNNNNGG 2 cut(s) 223, 308
AgsI TTSAA 1 cut(s) 232
AjiI CACGTC 1 cut(s) 220
Alw26I GTCTC 1 cut(s) 339
ApoI RAATTY 1 cut(s) 116
AsuHPI GGTGA 1 cut(s) 141
BauI CACGAG 1 cut(s) 306
BbsI GAAGAC 1 cut(s) 354
BccI CCATC 1 cut(s) 91
BcgI CGANNNNNNTGC 3 cut(s) 8, 32, 42
BcoDI GTCTC 1 cut(s) 339
BfmI CTRYAG 2 cut(s) 125, 174
BglII AGATCT 1 cut(s) 63
BmgBI CACGTC 1 cut(s) 220
BoxI GACNNNNGTC 1 cut(s) 212
BpiI GAAGAC 1 cut(s) 354
Bsc4I CCNNNNNNNGG 2 cut(s) 223, 308
BseLI CCNNNNNNNGG 2 cut(s) 223, 308
BseRI GAGGAG 3 cut(s) 95, 278, 349
BseYI CCCAGC 1 cut(s) 44
BsgI GTGCAG 1 cut(s) 38
BslI CCNNNNNNNGG 2 cut(s) 223, 308
BsmAI GTCTC 1 cut(s) 339
BsmI GAATGC 1 cut(s) 4
Bsp143I GATC 2 cut(s) 63, 121
BspACI CCGC 1 cut(s) 152
BspMAI CTGCAG 1 cut(s) 129
BssMI GATC 2 cut(s) 63, 121
BssSI CACGAG 1 cut(s) 306
Bst2BI CACGAG 1 cut(s) 306
Bst6I CTCTTC 1 cut(s) 44
BstC8I GCNNGC 1 cut(s) 136
BstENI CCTNNNNNAGG 1 cut(s) 306
BstKTI GATC 2 cut(s) 66, 124
BstMAI GTCTC 1 cut(s) 339
BstMBI GATC 2 cut(s) 63, 121
BstMWI GCNNNNNNNGC 1 cut(s) 151
BstNSI RCATGY 1 cut(s) 138
BstPAI GACNNNNGTC 1 cut(s) 212
BstSFI CTRYAG 2 cut(s) 125, 174
BstV2I GAAGAC 1 cut(s) 354
BstX2I RGATCY 1 cut(s) 63
BstYI RGATCY 1 cut(s) 63
BtrI CACGTC 1 cut(s) 220
BtsI GCAGTG 1 cut(s) 293
BtsIMutI CAGTG 1 cut(s) 293
Cac8I GCNNGC 1 cut(s) 136
CviAII CATG 4 cut(s) 41, 135, 223, 277
CviJI RGCY 3 cut(s) 145, 188, 227
CviKI_1 RGCY 3 cut(s) 145, 188, 227
DpnI GATC 2 cut(s) 65, 123
DpnII GATC 2 cut(s) 63, 121
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
EcoNI CCTNNNNNAGG 1 cut(s) 306
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 4 cut(s) 44, 138, 226, 280
FaiI YATR 9 cut(s) 42, 108, 136, 142, 192, 224, 278, 317, 368
FatI CATG 4 cut(s) 40, 134, 222, 276
GsaI CCCAGC 1 cut(s) 48
Hin1II CATG 4 cut(s) 44, 138, 226, 280
HinfI GANTC 1 cut(s) 37
HphI GGTGA 1 cut(s) 141
Hpy166II GTNNAC 1 cut(s) 217
Hpy188III TCNNGA 3 cut(s) 29, 306, 381
Hpy8I GTNNAC 1 cut(s) 217
HpyAV CCTTC 2 cut(s) 312, 330
HpyCH4IV ACGT 2 cut(s) 213, 219
HpyCH4V TGCA 4 cut(s) 4, 19, 127, 134
HpyF10VI GCNNNNNNNGC 1 cut(s) 151
HpySE526I ACGT 2 cut(s) 213, 219
Hsp92II CATG 4 cut(s) 44, 138, 226, 280
Kzo9I GATC 2 cut(s) 63, 121
LpnPI CCDG 2 cut(s) 30, 162
MaeII ACGT 2 cut(s) 213, 219
MaeIII GTNAC 1 cut(s) 53
MalI GATC 2 cut(s) 65, 123
MboI GATC 2 cut(s) 63, 121
MboII GAAGA 2 cut(s) 61, 354
MflI RGATCY 1 cut(s) 63
MluCI AATT 4 cut(s) 12, 24, 102, 116
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 7 cut(s) 73, 76, 296, 299, 302, 327, 330
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 23
MslI CAYNNNNRTG 1 cut(s) 139
Mva1269I GAATGC 1 cut(s) 4
MwoI GCNNNNNNNGC 1 cut(s) 151
NdeII GATC 2 cut(s) 63, 121
NlaIII CATG 4 cut(s) 44, 138, 226, 280
NmuCI GTSAC 1 cut(s) 53
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 138
PaeI GCATGC 1 cut(s) 138
PctI GAATGC 1 cut(s) 4
PfeI GAWTC 1 cut(s) 37
PflMI CCANNNNNTGG 1 cut(s) 223
PshAI GACNNNNGTC 1 cut(s) 212
PsiI TTATAA 1 cut(s) 192
PspFI CCCAGC 1 cut(s) 44
PstI CTGCAG 1 cut(s) 129
PsuI RGATCY 1 cut(s) 63
RseI CAYNNNNRTG 1 cut(s) 139
SaqAI TTAA 1 cut(s) 23
Sau3AI GATC 2 cut(s) 63, 121
SetI ASST 8 cut(s) 181, 216, 222, 237, 288, 304, 322, 341
SfcI CTRYAG 2 cut(s) 125, 174
SmiMI CAYNNNNRTG 1 cut(s) 139
SphI GCATGC 1 cut(s) 138
Sse9I AATT 4 cut(s) 12, 24, 102, 116
SsiI CCGC 1 cut(s) 152
TaiI ACGT 2 cut(s) 216, 222
TaqI TCGA 1 cut(s) 8
TasI AATT 4 cut(s) 12, 24, 102, 116
TfiI GAWTC 1 cut(s) 37
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TscAI CASTG 1 cut(s) 300
TseFI GTSAC 1 cut(s) 53
Tsp45I GTSAC 1 cut(s) 53
TspDTI ATGAA 1 cut(s) 29
TspRI CASTG 1 cut(s) 300
Van91I CCANNNNNTGG 1 cut(s) 223
XagI CCTNNNNNAGG 1 cut(s) 306
XapI RAATTY 1 cut(s) 116
XceI RCATGY 1 cut(s) 138
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.