Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0007193

Physical Location & Seq

Genomic Coordinates Forward (+)

56815317 .. 56819722

Gene Structure 4406 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019791

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGAAAATTTCAAGGTTCCAGATTACTTGGTCAGCTGGTAGCCGCACAGTACGTATATTTTCTACTAAAAAATTTCTACTCTCACCGTTTCCTTTAGTGTCTTTACATTCACTCCTTGACTCAATCTTAACAGCTATAGTCGGAGAATTCCTTGATCACCAATTCGTACTCTCATTCCCGTTTGAGAGGTTGAGGGTGATGGAAAGCGAAGAGGACCCTGTGAAGAAGACTCAAGTGGTGGATGCCCGGGCTAGAAATATCAGTCATAATGTTAGGTGCACTGAGTGTGGGAGTCAGTCCATTGAGGATTCACAAGCTGATATCGCCATTATTCTTAGAAAGTTAATTCGTGACGAGATTCATGCTGGGAAGAGTGACAAGGAGATCTACAAGAAGCTTGAGGAGGATTTTGGGGAGACGGTCCTTTATGCCCCAAAATTTGATCTGCAGACTGCAGGCTTATGGCTATCACCGCTTGTGGTTGCTGGTGCTGCTGCAGGTATTTGGGCTTATAAGAAGCACAGACAAAGGACTAACGTCCACGTCATGGCTTTGAACCTTATTAGAGGTGTTCCACTGACCCCAAATGAGAAGCAAACCATGTTAGACCTCCTCACACCGCCACCTTCACGAGGAAATATACCTTCGTCTGGGTGGAGGAGGTGGAGAGAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0007275 GO:0008150 GO:0008152 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016020 GO:0016043 GO:0016491 GO:0017004 GO:0019866 GO:0022414 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CcmH

Protein Analysis

226

Amino Acids

25.57

Weight (kDa)

9.42

Isoelectric Point (pI)

60.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CcmH	PF03918	66 - 204	2.2e-29	Cytochrome C biogenesis protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15220 AT1G15220
fragaria_vesca	FvH4_6g31840
malus_domestica	MD17G1190700.v1.1
prunus_persica	Prupe.6G357100_v2.0.a1 Prupe.6G357100_v2.0.a1 Prupe.6G357100_v2.0.a1
pyrus_communis	pycom17g19790
rosa_chinensis	RchiOBHm_Chr2g0139101 RchiOBHm_Chr2g0139151
rosa_laevigata	RLG00000019791
rosa_multiflora	Rmu_sc0001803.1_g000023 Rmu_sc0001803.1_g000031 Rmu_sc0006014.1_g000018 Rmu_sc0014249.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105620
rosa_rugosa	Rorug02G0354800 Rorug02G0355100
rosa_samantha	Rh2AG404800 Rh2BG415300 Rh2CG391100 Rh2DG424600 Rh2DG425000
rosa_wichuraiana	Rw2G033070 Rw2G033090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	513
Acc36I	ACCTGC	1 cut(s)	488
AccB7I	CCANNNNNTGG	1 cut(s)	547
AciI	CCGC	3 cut(s)	43, 473, 620
AcsI	RAATTY	4 cut(s)	6, 71, 146, 437
AdeI	CACNNNGTG	1 cut(s)	285
AfaI	GTAC	2 cut(s)	51, 168
AfiI	CCNNNNNNNGG	3 cut(s)	547, 632, 650
AgsI	TTSAA	2 cut(s)	12, 556
AjiI	CACGTC	1 cut(s)	544
AluBI	AGCT	4 cut(s)	35, 134, 317, 397
AluI	AGCT	4 cut(s)	35, 134, 317, 397
Alw21I	GWGCWC	1 cut(s)	281
Alw26I	GTCTC	1 cut(s)	410
Alw44I	GTGCAC	1 cut(s)	277
Ama87I	CYCGRG	1 cut(s)	246
ApaLI	GTGCAC	1 cut(s)	277
ApeKI	GCWGC	2 cut(s)	491, 494
ApoI	RAATTY	4 cut(s)	6, 71, 146, 437
AspS9I	GGNCC	2 cut(s)	214, 421
AsuC2I	CCSGG	2 cut(s)	247, 248
AsuHPI	GGTGA	4 cut(s)	75, 149, 208, 462
AvaI	CYCGRG	1 cut(s)	246
AvaII	GGWCC	2 cut(s)	214, 421
BaeGI	GKGCMC	1 cut(s)	281
BauI	CACGAG	1 cut(s)	630
BbsI	GAAGAC	1 cut(s)	233
Bbv12I	GWGCWC	1 cut(s)	281
BbvI	GCAGC	2 cut(s)	478, 481
BccI	CCATC	1 cut(s)	193
BcgI	CGANNNNNNTGC	2 cut(s)	344, 378
BclI	TGATCA	1 cut(s)	154
BcnI	CCSGG	2 cut(s)	247, 248
BcoDI	GTCTC	1 cut(s)	410
BfaI	CTAG	1 cut(s)	252
BfmI	CTRYAG	4 cut(s)	135, 446, 453, 495
BfuAI	ACCTGC	1 cut(s)	488
BglII	AGATCT	1 cut(s)	384
BisI	GCNGC	3 cut(s)	43, 492, 495
BlsI	GCNGC	3 cut(s)	44, 493, 496
Bme1390I	CCNGG	2 cut(s)	247, 248
Bme18I	GGWCC	2 cut(s)	214, 421
BmeT110I	CYCGRG	1 cut(s)	246
BmgBI	CACGTC	1 cut(s)	544
BmgT120I	GGNCC	2 cut(s)	214, 421
BmiI	GGNNCC	2 cut(s)	17, 216
BmrFI	CCNGG	2 cut(s)	247, 248
BmsI	GCATC	1 cut(s)	232
BoxI	GACNNNNGTC	1 cut(s)	536
BpiI	GAAGAC	1 cut(s)	233
BpuEI	CTTGAG	2 cut(s)	216, 419
BpuMI	CCSGG	2 cut(s)	247, 248
BsaAI	YACGTR	1 cut(s)	53
BsaJI	CCNNGG	1 cut(s)	246
BsaXI	ACNNNNNCTCC	2 cut(s)	96, 126
Bsc4I	CCNNNNNNNGG	3 cut(s)	547, 632, 650
BseDI	CCNNGG	1 cut(s)	246
BseGI	GGATG	1 cut(s)	247
BseLI	CCNNNNNNNGG	3 cut(s)	547, 632, 650
BseMII	CTCAG	1 cut(s)	273
BseRI	GAGGAG	3 cut(s)	416, 602, 673
BseSI	GKGCMC	1 cut(s)	281
BseXI	GCAGC	2 cut(s)	478, 481
BseYI	CCCAGC	1 cut(s)	365
BsiHKAI	GWGCWC	1 cut(s)	281
BsiHKCI	CYCGRG	1 cut(s)	246
BsiSI	CCGG	1 cut(s)	247
BslI	CCNNNNNNNGG	3 cut(s)	547, 632, 650
BsmAI	GTCTC	1 cut(s)	410
BsmBI	CGTCTC	1 cut(s)	410
BsoBI	CYCGRG	1 cut(s)	246
Bsp1286I	GDGCHC	1 cut(s)	281
Bsp143I	GATC	3 cut(s)	154, 384, 442
BspACI	CCGC	3 cut(s)	43, 473, 620
BspCNI	CTCAG	1 cut(s)	274
BspLI	GGNNCC	2 cut(s)	17, 216
BspMAI	CTGCAG	3 cut(s)	450, 457, 499
BspMI	ACCTGC	1 cut(s)	488
BssECI	CCNNGG	1 cut(s)	246
BssMI	GATC	3 cut(s)	154, 384, 442
BssSI	CACGAG	1 cut(s)	630
Bst2BI	CACGAG	1 cut(s)	630
Bst4CI	ACNGT	3 cut(s)	49, 87, 421
Bst6I	CTCTTC	2 cut(s)	204, 365
BstBAI	YACGTR	1 cut(s)	53
BstC8I	GCNNGC	1 cut(s)	457
BstDEI	CTNAG	2 cut(s)	282, 335
BstENI	CCTNNNNNAGG	1 cut(s)	630
BstF5I	GGATG	1 cut(s)	247
BstKTI	GATC	3 cut(s)	157, 387, 445
BstMAI	GTCTC	1 cut(s)	410
BstMBI	GATC	3 cut(s)	154, 384, 442
BstMWI	GCNNNNNNNGC	3 cut(s)	323, 472, 491
BstPAI	GACNNNNGTC	1 cut(s)	536
BstSCI	CCNGG	2 cut(s)	245, 246
BstSFI	CTRYAG	4 cut(s)	135, 446, 453, 495
BstSLI	GKGCMC	1 cut(s)	281
BstSNI	TACGTA	1 cut(s)	53
BstV1I	GCAGC	2 cut(s)	478, 481
BstV2I	GAAGAC	1 cut(s)	233
BstX2I	RGATCY	1 cut(s)	384
BstYI	RGATCY	1 cut(s)	384
BtrI	CACGTC	1 cut(s)	544
BtsCI	GGATG	1 cut(s)	247
BtsIMutI	CAGTG	2 cut(s)	279, 575
BveI	ACCTGC	1 cut(s)	488
Cac8I	GCNNGC	1 cut(s)	457
Cfr13I	GGNCC	2 cut(s)	214, 421
Cfr9I	CCCGGG	1 cut(s)	246
Csp6I	GTAC	2 cut(s)	50, 167
CviAII	CATG	3 cut(s)	362, 547, 601
CviQI	GTAC	2 cut(s)	50, 167
DdeI	CTNAG	2 cut(s)	282, 335
DpnI	GATC	3 cut(s)	156, 386, 444
DpnII	GATC	3 cut(s)	154, 384, 442
DraIII	CACNNNGTG	1 cut(s)	285
Eam1104I	CTCTTC	2 cut(s)	204, 365
EarI	CTCTTC	2 cut(s)	204, 365
Eco105I	TACGTA	1 cut(s)	53
Eco32I	GATATC	1 cut(s)	322
Eco47I	GGWCC	2 cut(s)	214, 421
Eco88I	CYCGRG	1 cut(s)	246
EcoNI	CCTNNNNNAGG	1 cut(s)	630
EcoO109I	RGGNCCY	1 cut(s)	214
EcoRI	GAATTC	1 cut(s)	146
EcoRV	GATATC	1 cut(s)	322
Esp3I	CGTCTC	1 cut(s)	410
FaeI	CATG	3 cut(s)	365, 550, 604
FatI	CATG	3 cut(s)	361, 546, 600
FbaI	TGATCA	1 cut(s)	154
Fnu4HI	GCNGC	3 cut(s)	43, 492, 495
FokI	GGATG	1 cut(s)	254
Fsp4HI	GCNGC	3 cut(s)	43, 492, 495
FspBI	CTAG	1 cut(s)	252
GluI	GCNGC	3 cut(s)	43, 492, 495
GsaI	CCCAGC	1 cut(s)	369
HapII	CCGG	1 cut(s)	247
Hin1II	CATG	3 cut(s)	365, 550, 604
HindIII	AAGCTT	1 cut(s)	395
HinfI	GANTC	5 cut(s)	119, 229, 292, 308, 358
HpaII	CCGG	1 cut(s)	247
HphI	GGTGA	4 cut(s)	75, 149, 208, 462
Hpy166II	GTNNAC	2 cut(s)	279, 541
Hpy188I	TCNGA	1 cut(s)	143
Hpy188III	TCNNGA	3 cut(s)	19, 350, 630
Hpy8I	GTNNAC	2 cut(s)	279, 541
HpyAV	CCTTC	2 cut(s)	636, 654
HpyCH4III	ACNGT	3 cut(s)	49, 87, 421
HpyCH4IV	ACGT	3 cut(s)	52, 537, 543
HpyCH4V	TGCA	4 cut(s)	279, 448, 455, 497
HpyF10VI	GCNNNNNNNGC	3 cut(s)	323, 472, 491
HpyF3I	CTNAG	2 cut(s)	282, 335
HpySE526I	ACGT	3 cut(s)	52, 537, 543
Hsp92II	CATG	3 cut(s)	365, 550, 604
Ksp22I	TGATCA	1 cut(s)	154
Kzo9I	GATC	3 cut(s)	154, 384, 442
LpnPI	CCDG	9 cut(s)	21, 32, 231, 260, 351, 441, 471, 483, 636
Lsp1109I	GCAGC	2 cut(s)	478, 481
LweI	GCATC	1 cut(s)	232
MaeI	CTAG	1 cut(s)	252
MaeII	ACGT	3 cut(s)	52, 537, 543
MaeIII	GTNAC	2 cut(s)	350, 374
MalI	GATC	3 cut(s)	156, 386, 444
MboI	GATC	3 cut(s)	154, 384, 442
MboII	GAAGA	4 cut(s)	221, 235, 238, 382
MflI	RGATCY	1 cut(s)	384
MhlI	GDGCHC	1 cut(s)	281
MluCI	AATT	6 cut(s)	6, 71, 146, 161, 345, 437
MlyI	GAGTC	3 cut(s)	113, 223, 301
MmeI	TCCRAC	1 cut(s)	121
MseI	TTAA	2 cut(s)	128, 344
MspA1I	CMGCKG	1 cut(s)	35
MspI	CCGG	1 cut(s)	247
MspR9I	CCNGG	2 cut(s)	247, 248
MwoI	GCNNNNNNNGC	3 cut(s)	323, 472, 491
NciI	CCSGG	2 cut(s)	247, 248
NdeII	GATC	3 cut(s)	154, 384, 442
NlaIII	CATG	3 cut(s)	365, 550, 604
NlaIV	GGNNCC	2 cut(s)	17, 216
NmuCI	GTSAC	2 cut(s)	350, 374
PfeI	GAWTC	2 cut(s)	308, 358
PflMI	CCANNNNNTGG	1 cut(s)	547
PkrI	GCNGC	3 cut(s)	44, 493, 496
PleI	GAGTC	3 cut(s)	113, 223, 300
PpsI	GAGTC	3 cut(s)	113, 223, 300
Ppu21I	YACGTR	1 cut(s)	53
PpuMI	RGGWCCY	1 cut(s)	214
PshAI	GACNNNNGTC	1 cut(s)	536
PsiI	TTATAA	1 cut(s)	513
Psp5II	RGGWCCY	1 cut(s)	214
PspFI	CCCAGC	1 cut(s)	365
PspN4I	GGNNCC	2 cut(s)	17, 216
PspPI	GGNCC	2 cut(s)	214, 421
PspPPI	RGGWCCY	1 cut(s)	214
PstI	CTGCAG	3 cut(s)	450, 457, 499
PsuI	RGATCY	1 cut(s)	384
PvuII	CAGCTG	1 cut(s)	35
RsaI	GTAC	2 cut(s)	51, 168
RsaNI	GTAC	2 cut(s)	50, 167
SaqAI	TTAA	2 cut(s)	128, 344
SatI	GCNGC	3 cut(s)	43, 492, 495
Sau3AI	GATC	3 cut(s)	154, 384, 442
Sau96I	GGNCC	2 cut(s)	214, 421
SchI	GAGTC	3 cut(s)	113, 223, 301
ScrFI	CCNGG	2 cut(s)	247, 248
SduI	GDGCHC	1 cut(s)	281
SfaNI	GCATC	1 cut(s)	232
SfcI	CTRYAG	4 cut(s)	135, 446, 453, 495
SinI	GGWCC	2 cut(s)	214, 421
SmaI	CCCGGG	1 cut(s)	248
SmlI	CTYRAG	2 cut(s)	231, 398
SmoI	CTYRAG	2 cut(s)	231, 398
SnaBI	TACGTA	1 cut(s)	53
SrfI	GCCCGGGC	1 cut(s)	248
Sse9I	AATT	6 cut(s)	6, 71, 146, 161, 345, 437
SsiI	CCGC	3 cut(s)	43, 473, 620
SspMI	CTAG	1 cut(s)	252
StyD4I	CCNGG	2 cut(s)	245, 246
TaaI	ACNGT	3 cut(s)	49, 87, 421
TaiI	ACGT	3 cut(s)	55, 540, 546
TasI	AATT	6 cut(s)	6, 71, 146, 161, 345, 437
TauI	GCSGC	1 cut(s)	45
TfiI	GAWTC	2 cut(s)	308, 358
Tru1I	TTAA	2 cut(s)	128, 344
Tru9I	TTAA	2 cut(s)	128, 344
TscAI	CASTG	2 cut(s)	286, 582
TseFI	GTSAC	2 cut(s)	350, 374
TseI	GCWGC	2 cut(s)	491, 494
Tsp45I	GTSAC	2 cut(s)	350, 374
TspDTI	ATGAA	2 cut(s)	17, 350
TspMI	CCCGGG	1 cut(s)	246
TspRI	CASTG	2 cut(s)	286, 582
Van91I	CCANNNNNTGG	1 cut(s)	547
VneI	GTGCAC	1 cut(s)	277
VpaK11BI	GGWCC	2 cut(s)	214, 421
XagI	CCTNNNNNAGG	1 cut(s)	630
XapI	RAATTY	4 cut(s)	6, 71, 146, 437
XmaI	CCCGGG	1 cut(s)	246
XspI	CTAG	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.