Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001803.1

Orthogroup ID

OG0007193

Physical Location & Seq

Genomic Coordinates Reverse (-)

67627 .. 68065

Gene Structure 439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001803.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

atgcatttgataatcgtgcagttaattcgtgacgagattcatgctgggaagagtgacaaggagatctacaagaagctggaggaggactttggggagacggtactttgtgccccaaaatttgatctgcttatggctatcaccggtatttgggcttataagcacagacaaaggactaacgtccacgtcatggcactgaaccttattagagatgttccactgaccccaaatgagaagcaaaccatgttagaactcctcacactgccaccttcacgaggaaatataccttcgtcttggtggaggaggtggagagaacaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0007275 GO:0008150 GO:0008152 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016020 GO:0016043 GO:0016491 GO:0017004 GO:0019866 GO:0022414 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CcmH

Protein Analysis

105

Amino Acids

12.39

Weight (kDa)

8.85

Isoelectric Point (pI)

53.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15220 AT1G15220
fragaria_vesca	FvH4_6g31840
malus_domestica	MD17G1190700.v1.1
prunus_persica	Prupe.6G357100_v2.0.a1 Prupe.6G357100_v2.0.a1 Prupe.6G357100_v2.0.a1
pyrus_communis	pycom17g19790
rosa_chinensis	RchiOBHm_Chr2g0139101 RchiOBHm_Chr2g0139151
rosa_laevigata	RLG00000019791
rosa_multiflora	Rmu_sc0001803.1_g000023 Rmu_sc0001803.1_g000031 Rmu_sc0006014.1_g000018 Rmu_sc0014249.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105620
rosa_rugosa	Rorug02G0354800 Rorug02G0355100
rosa_samantha	Rh2AG404800 Rh2BG415300 Rh2CG391100 Rh2DG424600 Rh2DG425000
rosa_wichuraiana	Rw2G033070 Rw2G033090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	156
AccB7I	CCANNNNNTGG	1 cut(s)	187
AcsI	RAATTY	1 cut(s)	116
AfaI	GTAC	1 cut(s)	102
AfiI	CCNNNNNNNGG	3 cut(s)	147, 187, 272
AgeI	ACCGGT	1 cut(s)	140
AjiI	CACGTC	1 cut(s)	184
AluBI	AGCT	1 cut(s)	76
AluI	AGCT	1 cut(s)	76
Alw26I	GTCTC	1 cut(s)	89
ApoI	RAATTY	1 cut(s)	116
AsiGI	ACCGGT	1 cut(s)	140
AsuHPI	GGTGA	1 cut(s)	130
BaeGI	GKGCMC	1 cut(s)	112
BauI	CACGAG	1 cut(s)	270
BcgI	CGANNNNNNTGC	4 cut(s)	8, 23, 42, 57
BcoDI	GTCTC	1 cut(s)	89
BglII	AGATCT	1 cut(s)	63
BmgBI	CACGTC	1 cut(s)	184
BoxI	GACNNNNGTC	1 cut(s)	176
BpmI	CTGGAG	1 cut(s)	98
BsaWI	WCCGGW	1 cut(s)	140
Bsc4I	CCNNNNNNNGG	3 cut(s)	147, 187, 272
Bse118I	RCCGGY	1 cut(s)	140
BseLI	CCNNNNNNNGG	3 cut(s)	147, 187, 272
BseRI	GAGGAG	3 cut(s)	95, 242, 313
BseSI	GKGCMC	1 cut(s)	112
BseYI	CCCAGC	1 cut(s)	44
BsgI	GTGCAG	1 cut(s)	38
BshTI	ACCGGT	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	141
BslI	CCNNNNNNNGG	3 cut(s)	147, 187, 272
BsmAI	GTCTC	1 cut(s)	89
BsmBI	CGTCTC	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	112
Bsp143I	GATC	2 cut(s)	63, 121
BsrFI	RCCGGY	1 cut(s)	140
BssAI	RCCGGY	1 cut(s)	140
BssMI	GATC	2 cut(s)	63, 121
BssSI	CACGAG	1 cut(s)	270
Bst2BI	CACGAG	1 cut(s)	270
Bst4CI	ACNGT	1 cut(s)	100
Bst6I	CTCTTC	1 cut(s)	44
BstENI	CCTNNNNNAGG	1 cut(s)	270
BstKTI	GATC	2 cut(s)	66, 124
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	2 cut(s)	63, 121
BstPAI	GACNNNNGTC	1 cut(s)	176
BstSLI	GKGCMC	1 cut(s)	112
BstX2I	RGATCY	1 cut(s)	63
BstYI	RGATCY	1 cut(s)	63
BtrI	CACGTC	1 cut(s)	184
BtsI	GCAGTG	1 cut(s)	257
BtsIMutI	CAGTG	3 cut(s)	191, 215, 257
Cfr10I	RCCGGY	1 cut(s)	140
Csp6I	GTAC	1 cut(s)	101
CspAI	ACCGGT	1 cut(s)	140
CviAII	CATG	3 cut(s)	41, 187, 241
CviJI	RGCY	3 cut(s)	76, 134, 152
CviKI_1	RGCY	3 cut(s)	76, 134, 152
CviQI	GTAC	1 cut(s)	101
DpnI	GATC	2 cut(s)	65, 123
DpnII	GATC	2 cut(s)	63, 121
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
EcoNI	CCTNNNNNAGG	1 cut(s)	270
EcoT22I	ATGCAT	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	89
FaeI	CATG	3 cut(s)	44, 190, 244
FaiI	YATR	6 cut(s)	42, 131, 156, 188, 242, 281
FatI	CATG	3 cut(s)	40, 186, 240
GsaI	CCCAGC	1 cut(s)	48
GsuI	CTGGAG	1 cut(s)	98
HapII	CCGG	1 cut(s)	141
Hin1II	CATG	3 cut(s)	44, 190, 244
HinfI	GANTC	1 cut(s)	37
HpaII	CCGG	1 cut(s)	141
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188III	TCNNGA	2 cut(s)	29, 270
Hpy8I	GTNNAC	1 cut(s)	181
HpyAV	CCTTC	2 cut(s)	276, 294
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4IV	ACGT	2 cut(s)	177, 183
HpyCH4V	TGCA	2 cut(s)	4, 19
HpySE526I	ACGT	2 cut(s)	177, 183
Hsp92II	CATG	3 cut(s)	44, 190, 244
Kzo9I	GATC	2 cut(s)	63, 121
LpnPI	CCDG	3 cut(s)	30, 62, 154
MaeII	ACGT	2 cut(s)	177, 183
MaeIII	GTNAC	2 cut(s)	29, 53
MalI	GATC	2 cut(s)	65, 123
MboI	GATC	2 cut(s)	63, 121
MboII	GAAGA	1 cut(s)	61
MflI	RGATCY	1 cut(s)	63
MhlI	GDGCHC	1 cut(s)	112
MluCI	AATT	2 cut(s)	24, 116
MnlI	CCTC	6 cut(s)	73, 76, 263, 266, 291, 294
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	23
MspI	CCGG	1 cut(s)	141
NdeII	GATC	2 cut(s)	63, 121
NlaIII	CATG	3 cut(s)	44, 190, 244
NmuCI	GTSAC	2 cut(s)	29, 53
NsiI	ATGCAT	1 cut(s)	6
PfeI	GAWTC	1 cut(s)	37
PflMI	CCANNNNNTGG	1 cut(s)	187
PinAI	ACCGGT	1 cut(s)	140
PshAI	GACNNNNGTC	1 cut(s)	176
PsiI	TTATAA	1 cut(s)	156
PspFI	CCCAGC	1 cut(s)	44
PsuI	RGATCY	1 cut(s)	63
RsaI	GTAC	1 cut(s)	102
RsaNI	GTAC	1 cut(s)	101
SaqAI	TTAA	1 cut(s)	23
Sau3AI	GATC	2 cut(s)	63, 121
SduI	GDGCHC	1 cut(s)	112
SetI	ASST	7 cut(s)	78, 180, 186, 201, 268, 286, 305
Sse9I	AATT	2 cut(s)	24, 116
TaaI	ACNGT	1 cut(s)	100
TaiI	ACGT	2 cut(s)	180, 186
TasI	AATT	2 cut(s)	24, 116
TfiI	GAWTC	1 cut(s)	37
Tru1I	TTAA	1 cut(s)	23
Tru9I	TTAA	1 cut(s)	23
TscAI	CASTG	3 cut(s)	198, 222, 264
TseFI	GTSAC	2 cut(s)	29, 53
Tsp45I	GTSAC	2 cut(s)	29, 53
TspDTI	ATGAA	1 cut(s)	29
TspRI	CASTG	3 cut(s)	198, 222, 264
Van91I	CCANNNNNTGG	1 cut(s)	187
XagI	CCTNNNNNAGG	1 cut(s)	270
XapI	RAATTY	1 cut(s)	116
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.