RchiOBHm_Chr2g0139101

Cytochrome c-type biogenesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0007193
Physical Location & Seq
Forward (+)
56739306 .. 56743230
3925 bp
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UTR
Exon/CDS
Intron
PRQ50968

Sequence Viewer

Length: 462 bp
ATGGAAAGCGAAGAGGACCCTGTGAAGAAGACTCAAGTGGTGGATGCCCGGGCTAGAAATATCAGTCATAATGTTAGGTGCACTGAGTGTGGGAGTCAGTCCATTGAGGATTCACAAGCTGATATCGCCATTCTTCTTAGAAAGATTCATGCTGGGAAGAGTGACAAGGAGATCTACAAGAAGCTTGAGGAGGATTTTGGGGAGACGGTACTTTATGCCCCAAAATTTGATGTGCAGACTGCAGGCTTATGGCTATCACCGCTTGTGGTTGCCGGTGCTGCTGCAGGTATTTGGGCTTATAAGAAGCACAGACAAAGGACTAACGTCCACGTCATGGCTTTGAACCTTATTAGAGGTGTTCCACTGACCCCAAATGAGAAGCAAACCATGTTAGACCTCCTCACACCGCCATCTTCACGAGGAAATATACCTTCATCTTGGTGGAGGTGGAGAGAACAATGA

Protein Analysis

153

Amino Acids

17.28

Weight (kDa)

8.57

Isoelectric Point (pI)

65.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CcmH PF03918 4 - 133 1.5e-24 Cytochrome C biogenesis protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 300
Acc36I ACCTGC 1 cut(s) 275
AccB7I CCANNNNNTGG 1 cut(s) 334
AciI CCGC 2 cut(s) 260, 407
AcsI RAATTY 1 cut(s) 224
AdeI CACNNNGTG 1 cut(s) 87
AfaI GTAC 1 cut(s) 210
AfiI CCNNNNNNNGG 1 cut(s) 334
AgsI TTSAA 1 cut(s) 343
AjiI CACGTC 1 cut(s) 331
AluBI AGCT 2 cut(s) 119, 184
AluI AGCT 2 cut(s) 119, 184
Alw21I GWGCWC 1 cut(s) 83
Alw26I GTCTC 1 cut(s) 197
Alw44I GTGCAC 1 cut(s) 79
Ama87I CYCGRG 1 cut(s) 48
ApaLI GTGCAC 1 cut(s) 79
ApeKI GCWGC 2 cut(s) 278, 281
ApoI RAATTY 1 cut(s) 224
AspS9I GGNCC 1 cut(s) 16
AsuC2I CCSGG 2 cut(s) 49, 50
AsuHPI GGTGA 1 cut(s) 249
AvaI CYCGRG 1 cut(s) 48
AvaII GGWCC 1 cut(s) 16
BaeGI GKGCMC 1 cut(s) 83
BauI CACGAG 1 cut(s) 417
BbsI GAAGAC 1 cut(s) 35
Bbv12I GWGCWC 1 cut(s) 83
BbvI GCAGC 2 cut(s) 265, 268
BccI CCATC 1 cut(s) 418
BcnI CCSGG 2 cut(s) 49, 50
BcoDI GTCTC 1 cut(s) 197
BfaI CTAG 1 cut(s) 54
BfmI CTRYAG 2 cut(s) 240, 282
BfuAI ACCTGC 1 cut(s) 275
BglII AGATCT 1 cut(s) 171
BisI GCNGC 2 cut(s) 279, 282
BlsI GCNGC 2 cut(s) 280, 283
Bme1390I CCNGG 2 cut(s) 49, 50
Bme18I GGWCC 1 cut(s) 16
BmeT110I CYCGRG 1 cut(s) 48
BmgBI CACGTC 1 cut(s) 331
BmgT120I GGNCC 1 cut(s) 16
BmiI GGNNCC 1 cut(s) 18
BmrFI CCNGG 2 cut(s) 49, 50
BmsI GCATC 1 cut(s) 34
BoxI GACNNNNGTC 1 cut(s) 323
BpiI GAAGAC 1 cut(s) 35
BpuEI CTTGAG 2 cut(s) 18, 206
BpuMI CCSGG 2 cut(s) 49, 50
BsaJI CCNNGG 1 cut(s) 48
Bsc4I CCNNNNNNNGG 1 cut(s) 334
Bse118I RCCGGY 1 cut(s) 272
BseDI CCNNGG 1 cut(s) 48
BseGI GGATG 1 cut(s) 49
BseLI CCNNNNNNNGG 1 cut(s) 334
BseMII CTCAG 1 cut(s) 75
BseRI GAGGAG 2 cut(s) 203, 389
BseSI GKGCMC 1 cut(s) 83
BseXI GCAGC 2 cut(s) 265, 268
BseYI CCCAGC 1 cut(s) 152
BsgI GTGCAG 1 cut(s) 254
BsiHKAI GWGCWC 1 cut(s) 83
BsiHKCI CYCGRG 1 cut(s) 48
BsiSI CCGG 2 cut(s) 49, 273
BslI CCNNNNNNNGG 1 cut(s) 334
BsmAI GTCTC 1 cut(s) 197
BsmBI CGTCTC 1 cut(s) 197
BsoBI CYCGRG 1 cut(s) 48
Bsp1286I GDGCHC 1 cut(s) 83
Bsp143I GATC 1 cut(s) 171
BspACI CCGC 2 cut(s) 260, 407
BspCNI CTCAG 1 cut(s) 76
BspLI GGNNCC 1 cut(s) 18
BspMAI CTGCAG 2 cut(s) 244, 286
BspMI ACCTGC 1 cut(s) 275
BsrFI RCCGGY 1 cut(s) 272
BssAI RCCGGY 1 cut(s) 272
BssECI CCNNGG 1 cut(s) 48
BssMI GATC 1 cut(s) 171
BssSI CACGAG 1 cut(s) 417
Bst2BI CACGAG 1 cut(s) 417
Bst4CI ACNGT 1 cut(s) 208
Bst6I CTCTTC 2 cut(s) 6, 152
BstC8I GCNNGC 1 cut(s) 244
BstDEI CTNAG 2 cut(s) 84, 137
BstF5I GGATG 1 cut(s) 49
BstKTI GATC 1 cut(s) 174
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 1 cut(s) 171
BstMWI GCNNNNNNNGC 3 cut(s) 125, 259, 278
BstPAI GACNNNNGTC 1 cut(s) 323
BstSCI CCNGG 2 cut(s) 47, 48
BstSFI CTRYAG 2 cut(s) 240, 282
BstSLI GKGCMC 1 cut(s) 83
BstV1I GCAGC 2 cut(s) 265, 268
BstV2I GAAGAC 1 cut(s) 35
BstX2I RGATCY 1 cut(s) 171
BstYI RGATCY 1 cut(s) 171
BtrI CACGTC 1 cut(s) 331
BtsCI GGATG 1 cut(s) 49
BtsIMutI CAGTG 2 cut(s) 81, 362
BveI ACCTGC 1 cut(s) 275
Cac8I GCNNGC 1 cut(s) 244
Cfr10I RCCGGY 1 cut(s) 272
Cfr13I GGNCC 1 cut(s) 16
Cfr9I CCCGGG 1 cut(s) 48
Csp6I GTAC 1 cut(s) 209
CviAII CATG 3 cut(s) 149, 334, 388
CviJI RGCY 7 cut(s) 53, 119, 184, 246, 253, 296, 338
CviKI_1 RGCY 7 cut(s) 53, 119, 184, 246, 253, 296, 338
CviQI GTAC 1 cut(s) 209
DdeI CTNAG 2 cut(s) 84, 137
DpnI GATC 1 cut(s) 173
DpnII GATC 1 cut(s) 171
DraIII CACNNNGTG 1 cut(s) 87
Eam1104I CTCTTC 2 cut(s) 6, 152
EarI CTCTTC 2 cut(s) 6, 152
Eco32I GATATC 1 cut(s) 124
Eco47I GGWCC 1 cut(s) 16
Eco88I CYCGRG 1 cut(s) 48
EcoO109I RGGNCCY 1 cut(s) 16
EcoRV GATATC 1 cut(s) 124
Esp3I CGTCTC 1 cut(s) 197
FaeI CATG 3 cut(s) 152, 337, 391
FaiI YATR 8 cut(s) 69, 150, 216, 250, 300, 335, 389, 428
FatI CATG 3 cut(s) 148, 333, 387
Fnu4HI GCNGC 2 cut(s) 279, 282
FokI GGATG 1 cut(s) 56
Fsp4HI GCNGC 2 cut(s) 279, 282
FspBI CTAG 1 cut(s) 54
GluI GCNGC 2 cut(s) 279, 282
GsaI CCCAGC 1 cut(s) 156
HapII CCGG 2 cut(s) 49, 273
Hin1II CATG 3 cut(s) 152, 337, 391
HindIII AAGCTT 1 cut(s) 182
HinfI GANTC 4 cut(s) 31, 94, 110, 145
HpaII CCGG 2 cut(s) 49, 273
HphI GGTGA 1 cut(s) 249
Hpy166II GTNNAC 2 cut(s) 81, 328
Hpy188III TCNNGA 1 cut(s) 417
Hpy8I GTNNAC 2 cut(s) 81, 328
HpyAV CCTTC 1 cut(s) 441
HpyCH4III ACNGT 1 cut(s) 208
HpyCH4IV ACGT 2 cut(s) 324, 330
HpyCH4V TGCA 4 cut(s) 81, 235, 242, 284
HpyF10VI GCNNNNNNNGC 3 cut(s) 125, 259, 278
HpyF3I CTNAG 2 cut(s) 84, 137
HpySE526I ACGT 2 cut(s) 324, 330
Hsp92II CATG 3 cut(s) 152, 337, 391
Kzo9I GATC 1 cut(s) 171
LpnPI CCDG 6 cut(s) 33, 62, 138, 228, 270, 286
Lsp1109I GCAGC 2 cut(s) 265, 268
LweI GCATC 1 cut(s) 34
MaeI CTAG 1 cut(s) 54
MaeII ACGT 2 cut(s) 324, 330
MaeIII GTNAC 1 cut(s) 161
MalI GATC 1 cut(s) 173
MboI GATC 1 cut(s) 171
MboII GAAGA 6 cut(s) 23, 37, 40, 125, 169, 405
MflI RGATCY 1 cut(s) 171
MhlI GDGCHC 1 cut(s) 83
MluCI AATT 1 cut(s) 224
MlyI GAGTC 2 cut(s) 25, 103
MnlI CCTC 9 cut(s) 7, 100, 181, 184, 347, 407, 410, 413, 438
MslI CAYNNNNRTG 1 cut(s) 439
MspI CCGG 2 cut(s) 49, 273
MspR9I CCNGG 2 cut(s) 49, 50
MwoI GCNNNNNNNGC 3 cut(s) 125, 259, 278
NciI CCSGG 2 cut(s) 49, 50
NdeII GATC 1 cut(s) 171
NlaIII CATG 3 cut(s) 152, 337, 391
NlaIV GGNNCC 1 cut(s) 18
NmuCI GTSAC 1 cut(s) 161
PfeI GAWTC 2 cut(s) 110, 145
PflMI CCANNNNNTGG 1 cut(s) 334
PkrI GCNGC 2 cut(s) 280, 283
PleI GAGTC 2 cut(s) 25, 102
PpsI GAGTC 2 cut(s) 25, 102
PpuMI RGGWCCY 1 cut(s) 16
PshAI GACNNNNGTC 1 cut(s) 323
PsiI TTATAA 1 cut(s) 300
Psp5II RGGWCCY 1 cut(s) 16
PspFI CCCAGC 1 cut(s) 152
PspN4I GGNNCC 1 cut(s) 18
PspPI GGNCC 1 cut(s) 16
PspPPI RGGWCCY 1 cut(s) 16
PstI CTGCAG 2 cut(s) 244, 286
PsuI RGATCY 1 cut(s) 171
RsaI GTAC 1 cut(s) 210
RsaNI GTAC 1 cut(s) 209
RseI CAYNNNNRTG 1 cut(s) 439
SatI GCNGC 2 cut(s) 279, 282
Sau3AI GATC 1 cut(s) 171
Sau96I GGNCC 1 cut(s) 16
SchI GAGTC 2 cut(s) 25, 103
ScrFI CCNGG 2 cut(s) 49, 50
SduI GDGCHC 1 cut(s) 83
SfaNI GCATC 1 cut(s) 34
SfcI CTRYAG 2 cut(s) 240, 282
SinI GGWCC 1 cut(s) 16
SmaI CCCGGG 1 cut(s) 50
SmiMI CAYNNNNRTG 1 cut(s) 439
SmlI CTYRAG 2 cut(s) 33, 185
SmoI CTYRAG 2 cut(s) 33, 185
SrfI GCCCGGGC 1 cut(s) 50
Sse9I AATT 1 cut(s) 224
SsiI CCGC 2 cut(s) 260, 407
SspMI CTAG 1 cut(s) 54
StyD4I CCNGG 2 cut(s) 47, 48
TaaI ACNGT 1 cut(s) 208
TaiI ACGT 2 cut(s) 327, 333
TasI AATT 1 cut(s) 224
TfiI GAWTC 2 cut(s) 110, 145
TscAI CASTG 2 cut(s) 88, 369
TseFI GTSAC 1 cut(s) 161
TseI GCWGC 2 cut(s) 278, 281
Tsp45I GTSAC 1 cut(s) 161
TspDTI ATGAA 2 cut(s) 137, 423
TspMI CCCGGG 1 cut(s) 48
TspRI CASTG 2 cut(s) 88, 369
Van91I CCANNNNNTGG 1 cut(s) 334
VneI GTGCAC 1 cut(s) 79
VpaK11BI GGWCC 1 cut(s) 16
XapI RAATTY 1 cut(s) 224
XmaI CCCGGG 1 cut(s) 48
XspI CTAG 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.