Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0007193

Physical Location & Seq

Genomic Coordinates Forward (+)

22724102 .. 22726927

Gene Structure 2826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1190700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGGTAGCGAAGAGGACCCGGTGAAGAAGTCTCAGGTGGTGGATGCCCGGGCTCGGAACATTAGTCATAATGTTCGATGCACTGAGTGTGGGAGTCAGTCCATTGAAGATTCACAAGCGGATATTGCCATTTTGCTTAGAAAGTTAATTCGGGATGAAATTCATGCTGGGAAGAGCGATAAAGAGATATATAAGAAGCTTGAAGAGGACTTTGGGGAGACAGTACTTTATGCCCCAAAATTTGATCTGCAGACTGCAGGCTTGTGGTTATCACCGCTTGTCGTTGCTGGTGCTGCTGCAGGAATATGGGCATTTAACAGGCACAGGCAAAAGACTAATGTCCACATCATGGCCTTGAACCTTGTTAGAGGTGTTCCATTGACCCCGAATGAGAAGCAAACCATATTAGACCTCCTCACGCCTCCGCCTTCACGAGGAACTCCTTCCTCATTGTGGAGGAGGTGGAGAGAACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0007275 GO:0008150 GO:0008152 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016020 GO:0016043 GO:0016491 GO:0017004 GO:0019866 GO:0022414 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CcmH

Protein Analysis

159

Amino Acids

17.75

Weight (kDa)

8.6

Isoelectric Point (pI)

75.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CcmH	PF03918	5 - 138	1.3e-29	Cytochrome C biogenesis protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15220 AT1G15220
fragaria_vesca	FvH4_6g31840
malus_domestica	MD17G1190700.v1.1
prunus_persica	Prupe.6G357100_v2.0.a1 Prupe.6G357100_v2.0.a1 Prupe.6G357100_v2.0.a1
pyrus_communis	pycom17g19790
rosa_chinensis	RchiOBHm_Chr2g0139101 RchiOBHm_Chr2g0139151
rosa_laevigata	RLG00000019791
rosa_multiflora	Rmu_sc0001803.1_g000023 Rmu_sc0001803.1_g000031 Rmu_sc0006014.1_g000018 Rmu_sc0014249.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105620
rosa_rugosa	Rorug02G0354800 Rorug02G0355100
rosa_samantha	Rh2AG404800 Rh2BG415300 Rh2CG391100 Rh2DG424600 Rh2DG425000
rosa_wichuraiana	Rw2G033070 Rw2G033090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	349
AciI	CCGC	3 cut(s)	119, 275, 425
AcsI	RAATTY	2 cut(s)	159, 239
AdeI	CACNNNGTG	1 cut(s)	87
AfaI	GTAC	1 cut(s)	225
AfiI	CCNNNNNNNGG	4 cut(s)	54, 349, 434, 453
AgsI	TTSAA	3 cut(s)	107, 203, 358
AjuI	GAANNNNNNNTTGG	2 cut(s)	195, 227
AluBI	AGCT	1 cut(s)	199
AluI	AGCT	1 cut(s)	199
Alw26I	GTCTC	2 cut(s)	36, 212
Ama87I	CYCGRG	1 cut(s)	48
AoxI	GGCC	1 cut(s)	351
ApeKI	GCWGC	2 cut(s)	293, 296
ApoI	RAATTY	2 cut(s)	159, 239
Asp700I	GAANNNNTTC	1 cut(s)	442
AspS9I	GGNCC	1 cut(s)	16
AsuC2I	CCSGG	3 cut(s)	20, 49, 50
AsuHPI	GGTGA	2 cut(s)	34, 264
AvaI	CYCGRG	1 cut(s)	48
AvaII	GGWCC	1 cut(s)	16
BanII	GRGCYC	1 cut(s)	55
BauI	CACGAG	1 cut(s)	432
BbvI	GCAGC	2 cut(s)	280, 283
BcnI	CCSGG	3 cut(s)	20, 49, 50
BcoDI	GTCTC	2 cut(s)	36, 212
BfmI	CTRYAG	3 cut(s)	248, 255, 297
BisI	GCNGC	2 cut(s)	294, 297
BlsI	GCNGC	2 cut(s)	295, 298
BmcAI	AGTACT	1 cut(s)	225
Bme1390I	CCNGG	3 cut(s)	20, 49, 50
Bme18I	GGWCC	1 cut(s)	16
BmeT110I	CYCGRG	1 cut(s)	48
BmgT120I	GGNCC	1 cut(s)	16
BmiI	GGNNCC	1 cut(s)	18
BmrFI	CCNGG	3 cut(s)	20, 49, 50
BmsI	GCATC	2 cut(s)	34, 68
BoxI	GACNNNNGTC	1 cut(s)	338
BpuMI	CCSGG	3 cut(s)	20, 49, 50
BsaJI	CCNNGG	1 cut(s)	48
Bsc4I	CCNNNNNNNGG	4 cut(s)	54, 349, 434, 453
BseDI	CCNNGG	1 cut(s)	48
BseGI	GGATG	2 cut(s)	49, 160
BseLI	CCNNNNNNNGG	4 cut(s)	54, 349, 434, 453
BseMII	CTCAG	2 cut(s)	47, 75
BseRI	GAGGAG	2 cut(s)	404, 472
BseXI	GCAGC	2 cut(s)	280, 283
BseYI	CCCAGC	1 cut(s)	167
BshFI	GGCC	1 cut(s)	353
BsiHKCI	CYCGRG	1 cut(s)	48
BsiSI	CCGG	2 cut(s)	20, 49
BslI	CCNNNNNNNGG	4 cut(s)	54, 349, 434, 453
BsmAI	GTCTC	2 cut(s)	36, 212
BsnI	GGCC	1 cut(s)	353
BsoBI	CYCGRG	1 cut(s)	48
Bsp1286I	GDGCHC	1 cut(s)	55
Bsp143I	GATC	1 cut(s)	244
BspACI	CCGC	3 cut(s)	119, 275, 425
BspANI	GGCC	1 cut(s)	353
BspCNI	CTCAG	2 cut(s)	46, 76
BspLI	GGNNCC	1 cut(s)	18
BspMAI	CTGCAG	3 cut(s)	252, 259, 301
BspQI	GCTCTTC	1 cut(s)	167
BssECI	CCNNGG	1 cut(s)	48
BssMI	GATC	1 cut(s)	244
BssSI	CACGAG	1 cut(s)	432
Bst2BI	CACGAG	1 cut(s)	432
Bst4CI	ACNGT	2 cut(s)	223, 474
Bst6I	CTCTTC	3 cut(s)	6, 167, 198
BstC8I	GCNNGC	1 cut(s)	259
BstDEI	CTNAG	3 cut(s)	33, 84, 137
BstENI	CCTNNNNNAGG	1 cut(s)	432
BstF5I	GGATG	2 cut(s)	49, 160
BstKTI	GATC	1 cut(s)	247
BstMAI	GTCTC	2 cut(s)	36, 212
BstMBI	GATC	1 cut(s)	244
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 293
BstPAI	GACNNNNGTC	1 cut(s)	338
BstSCI	CCNGG	3 cut(s)	18, 47, 48
BstSFI	CTRYAG	3 cut(s)	248, 255, 297
BstV1I	GCAGC	2 cut(s)	280, 283
BsuRI	GGCC	1 cut(s)	353
BtsCI	GGATG	2 cut(s)	49, 160
BtsIMutI	CAGTG	1 cut(s)	81
Cac8I	GCNNGC	1 cut(s)	259
Cfr13I	GGNCC	1 cut(s)	16
Cfr9I	CCCGGG	1 cut(s)	48
Csp6I	GTAC	1 cut(s)	224
CviAII	CATG	2 cut(s)	164, 349
CviJI	RGCY	4 cut(s)	53, 199, 261, 353
CviKI_1	RGCY	4 cut(s)	53, 199, 261, 353
CviQI	GTAC	1 cut(s)	224
DdeI	CTNAG	3 cut(s)	33, 84, 137
DpnI	GATC	1 cut(s)	246
DpnII	GATC	1 cut(s)	244
DraIII	CACNNNGTG	1 cut(s)	87
Eam1104I	CTCTTC	3 cut(s)	6, 167, 198
EarI	CTCTTC	3 cut(s)	6, 167, 198
EciI	GGCGGA	1 cut(s)	414
Eco24I	GRGCYC	1 cut(s)	55
Eco47I	GGWCC	1 cut(s)	16
Eco88I	CYCGRG	1 cut(s)	48
EcoNI	CCTNNNNNAGG	1 cut(s)	432
EcoO109I	RGGNCCY	1 cut(s)	16
EcoT38I	GRGCYC	1 cut(s)	55
FaeI	CATG	2 cut(s)	167, 352
FaiI	YATR	8 cut(s)	69, 165, 190, 192, 231, 307, 350, 404
FatI	CATG	2 cut(s)	163, 348
Fnu4HI	GCNGC	2 cut(s)	294, 297
FokI	GGATG	2 cut(s)	56, 167
FriOI	GRGCYC	1 cut(s)	55
Fsp4HI	GCNGC	2 cut(s)	294, 297
GluI	GCNGC	2 cut(s)	294, 297
GsaI	CCCAGC	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	353
HapII	CCGG	2 cut(s)	20, 49
Hin1II	CATG	2 cut(s)	167, 352
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	2 cut(s)	94, 110
HpaII	CCGG	2 cut(s)	20, 49
HphI	GGTGA	2 cut(s)	34, 264
Hpy166II	GTNNAC	1 cut(s)	343
Hpy188I	TCNGA	1 cut(s)	57
Hpy188III	TCNNGA	2 cut(s)	152, 432
Hpy8I	GTNNAC	1 cut(s)	343
HpyAV	CCTTC	2 cut(s)	438, 453
HpyCH4III	ACNGT	2 cut(s)	223, 474
HpyCH4V	TGCA	4 cut(s)	81, 250, 257, 299
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 293
HpyF3I	CTNAG	3 cut(s)	33, 84, 137
Hsp92II	CATG	2 cut(s)	167, 352
Kzo9I	GATC	1 cut(s)	244
LguI	GCTCTTC	1 cut(s)	167
LpnPI	CCDG	9 cut(s)	20, 33, 62, 153, 243, 273, 285, 304, 310
Lsp1109I	GCAGC	2 cut(s)	280, 283
LweI	GCATC	2 cut(s)	34, 68
MalI	GATC	1 cut(s)	246
MboI	GATC	1 cut(s)	244
MboII	GAAGA	5 cut(s)	23, 37, 119, 184, 215
MhlI	GDGCHC	1 cut(s)	55
MluCI	AATT	3 cut(s)	147, 159, 239
MlyI	GAGTC	1 cut(s)	103
MroXI	GAANNNNTTC	1 cut(s)	442
MseI	TTAA	2 cut(s)	146, 315
MspI	CCGG	2 cut(s)	20, 49
MspR9I	CCNGG	3 cut(s)	20, 49, 50
MwoI	GCNNNNNNNGC	2 cut(s)	125, 293
NciI	CCSGG	3 cut(s)	20, 49, 50
NdeII	GATC	1 cut(s)	244
NlaIII	CATG	2 cut(s)	167, 352
NlaIV	GGNNCC	1 cut(s)	18
PciSI	GCTCTTC	1 cut(s)	167
PdmI	GAANNNNTTC	1 cut(s)	442
PfeI	GAWTC	1 cut(s)	110
PflMI	CCANNNNNTGG	1 cut(s)	349
PkrI	GCNGC	2 cut(s)	295, 298
PleI	GAGTC	1 cut(s)	102
PpsI	GAGTC	1 cut(s)	102
PpuMI	RGGWCCY	1 cut(s)	16
PshAI	GACNNNNGTC	1 cut(s)	338
Psp5II	RGGWCCY	1 cut(s)	16
PspFI	CCCAGC	1 cut(s)	167
PspN4I	GGNNCC	1 cut(s)	18
PspPI	GGNCC	1 cut(s)	16
PspPPI	RGGWCCY	1 cut(s)	16
PstI	CTGCAG	3 cut(s)	252, 259, 301
RsaI	GTAC	1 cut(s)	225
RsaNI	GTAC	1 cut(s)	224
SapI	GCTCTTC	1 cut(s)	167
SaqAI	TTAA	2 cut(s)	146, 315
SatI	GCNGC	2 cut(s)	294, 297
Sau3AI	GATC	1 cut(s)	244
Sau96I	GGNCC	1 cut(s)	16
ScaI	AGTACT	1 cut(s)	225
SchI	GAGTC	1 cut(s)	103
ScrFI	CCNGG	3 cut(s)	20, 49, 50
SduI	GDGCHC	1 cut(s)	55
SetI	ASST	6 cut(s)	39, 201, 363, 373, 414, 464
SfaNI	GCATC	2 cut(s)	34, 68
SfcI	CTRYAG	3 cut(s)	248, 255, 297
SinI	GGWCC	1 cut(s)	16
SmaI	CCCGGG	1 cut(s)	50
SrfI	GCCCGGGC	1 cut(s)	50
Sse9I	AATT	3 cut(s)	147, 159, 239
SsiI	CCGC	3 cut(s)	119, 275, 425
StyD4I	CCNGG	3 cut(s)	18, 47, 48
TaaI	ACNGT	2 cut(s)	223, 474
TaqI	TCGA	1 cut(s)	76
TasI	AATT	3 cut(s)	147, 159, 239
TatI	WGTACW	1 cut(s)	223
TfiI	GAWTC	1 cut(s)	110
Tru1I	TTAA	2 cut(s)	146, 315
Tru9I	TTAA	2 cut(s)	146, 315
TscAI	CASTG	1 cut(s)	88
TseI	GCWGC	2 cut(s)	293, 296
TspDTI	ATGAA	2 cut(s)	152, 171
TspMI	CCCGGG	1 cut(s)	48
TspRI	CASTG	1 cut(s)	88
Van91I	CCANNNNNTGG	1 cut(s)	349
VpaK11BI	GGWCC	1 cut(s)	16
XagI	CCTNNNNNAGG	1 cut(s)	432
XapI	RAATTY	2 cut(s)	159, 239
XmaI	CCCGGG	1 cut(s)	48
XmnI	GAANNNNTTC	1 cut(s)	442
ZrmI	AGTACT	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.