Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007193

Physical Location & Seq

Genomic Coordinates Reverse (-)

44678177 .. 44680822

Gene Structure 2646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0355100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1464 bp

ATGGCCGATGCAAAACCTATTTTGCAGTTTCTTCTGTTTATGTTTCTTGTTTGCCTCGGTACTTATGGAAATGGGGTTCAGGGTTTTAGAGAGAAGAACAAGGTGCTCGACCTGCAAGAGTTTCGTTTGAAGCAGCATGGTGGAACTGGAACCAGAACTAGTGCTTGCCTCTCCCAGAAATCAAGAAAGGAAAAAGGTGCAACTATATTGGAAATAAAACACAGAGATTATTGCTCAGCTGGAAAGATTGTTGACTGGAACAAAAAGCAACAGAAACGTTTAATGTTGGATGATCTTCATGTTCGGTTTCTGCAATCCCAATTCCGATATAGGATTTCTGGCATTACTACAAAAGATGATGTATCAGAAGCTCAAATTCCATTAACTTCTGGCGTAAGGCTAGAAACACTAAACTACATCGTAACTGTGGAATTGGGTGGTAGAAATATGACGGTGATTGTAGACACAGGCAGTGACTTGACTTGGGTTCAATGCCAACCTTGTAAATTGTGCTACAATCAACAAGAACCTCTCTTCAACCCTTCTGAATCTAAATCATACCAATCAGTTTTATGCAACTCAACAAATTGTCAAGCCCTCCAGTTTGCTACTGGGAATTCAGGAGTGTGTGGGAGGAATCCTCAGACCTGTAACTATGTTGTGAACTATGGTGATGGCTCCTACACTCGGGGTGAGCTTGCTCGAGACCATCTCTACCTTGGAACTACACCAGTGGAGAATTTTGTGTTTGGTTGTGGCAGAAACAATAAGGGTCTGTTTGGGGGAGCTTCAGGTTTGATGGGTTTGGGAAGGAGTGATAGTCTCTCAGTGGTTTCTCAAACATCTGGCTTATTTGGTGGGGTTTTCTCTTACTGTTTACCTTCAACAGAAGTCGCAGATTCTGGTTCATTAGTTATGGGTGGGGATTCTTCAATTTACAAGAATTCAACTCCTATTTCTTACACTAGAATGGTTGCAAATCCACAGCTATCCACCTTCTATTTTCTCAATCTCACCGGTATAAGTATTGGGGGAGTGGCTTTACAAGTTCCTAGTTTTGCAAGCGGTGGGATTCTGATCGATTCTGGGACAGTTATTTCAAGGCTGCCCCCTTCAGTTTACAAGGCTATCAAGGCAGAGTTTCTGAAACAGTTTTCCGGGTACCCCCCAGCACCGGGTTTTTCAATTTTGGACACTTGCTTCAACCTTAGTGCATATCAAGAGGTGAACATTCCTACAATGAAGATGCACTTTGAGGGAGATGCAGAGCTGACTGTCGATGTAACCGGAATTTTCTACATGGTGAAGACTGATGCATCCCAGATCTGTTTGGCTCTTGCAAGTCTTTCATACGAAGATGAGGTGGCTATTATTGGGAACTATCAGCAAAGAAACCAAAGGGTTGTATACAATACTAAAGACTCTAAGCTGGGATTTGCAGAAGAATCATGCAGCTTCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0007275 GO:0008150 GO:0008152 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016020 GO:0016043 GO:0016491 GO:0017004 GO:0019866 GO:0022414 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CcmH

Protein Analysis

487

Amino Acids

53.34

Weight (kDa)

7.82

Isoelectric Point (pI)

35.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	139 - 308	4.8e-49	Xylanase inhibitor N-terminal
Asp	PF00026	139 - 481	7.4e-23	Eukaryotic aspartyl protease
TAXi_C	PF14541	334 - 480	5.1e-30	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15220 AT1G15220
fragaria_vesca	FvH4_6g31840
malus_domestica	MD17G1190700.v1.1
prunus_persica	Prupe.6G357100_v2.0.a1 Prupe.6G357100_v2.0.a1 Prupe.6G357100_v2.0.a1
pyrus_communis	pycom17g19790
rosa_chinensis	RchiOBHm_Chr2g0139101 RchiOBHm_Chr2g0139151
rosa_laevigata	RLG00000019791
rosa_multiflora	Rmu_sc0001803.1_g000023 Rmu_sc0001803.1_g000031 Rmu_sc0006014.1_g000018 Rmu_sc0014249.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105620
rosa_rugosa	Rorug02G0354800 Rorug02G0355100
rosa_samantha	Rh2AG404800 Rh2BG415300 Rh2CG391100 Rh2DG424600 Rh2DG425000
rosa_wichuraiana	Rw2G033070 Rw2G033090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	120
Acc65I	GGTACC	1 cut(s)	1161
AccB1I	GGYRCC	1 cut(s)	1161
AccI	GTMKAC	2 cut(s)	462, 1407
AciI	CCGC	1 cut(s)	1065
AclI	AACGTT	1 cut(s)	277
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	5 cut(s)	375, 616, 739, 943, 1290
AcuI	CTGAAG	2 cut(s)	774, 1098
AfaI	GTAC	2 cut(s)	61, 1163
AfiI	CCNNNNNNNGG	3 cut(s)	687, 1174, 1175
AgeI	ACCGGT	1 cut(s)	1016
AgsI	TTSAA	9 cut(s)	130, 491, 538, 885, 933, 948, 1101, 1185, 1204
AhlI	ACTAGT	1 cut(s)	158
AloI	GAACNNNNNNTCC	2 cut(s)	60, 92
AluBI	AGCT	8 cut(s)	239, 371, 697, 788, 988, 1270, 1429, 1455
AluI	AGCT	8 cut(s)	239, 371, 697, 788, 988, 1270, 1429, 1455
Alw21I	GWGCWC	1 cut(s)	108
Alw26I	GTCTC	2 cut(s)	699, 827
AlwNI	CAGNNNCTG	1 cut(s)	902
Ama87I	CYCGRG	2 cut(s)	687, 702
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	133, 1105, 1452
ApoI	RAATTY	5 cut(s)	375, 616, 739, 943, 1290
AsiGI	ACCGGT	1 cut(s)	1016
Asp718I	GGTACC	1 cut(s)	1161
AsuC2I	CCSGG	2 cut(s)	1159, 1176
AsuHPI	GGTGA	6 cut(s)	466, 683, 704, 1006, 1237, 1315
AvaI	CYCGRG	2 cut(s)	687, 702
BanI	GGYRCC	1 cut(s)	1161
BbsI	GAAGAC	1 cut(s)	1313
Bbv12I	GWGCWC	1 cut(s)	108
BbvI	GCAGC	2 cut(s)	145, 1092
BccI	CCATC	3 cut(s)	668, 717, 793
BcgI	CGANNNNNNTGC	2 cut(s)	104, 138
BcnI	CCSGG	2 cut(s)	1159, 1176
BcoDI	GTCTC	2 cut(s)	699, 827
BcuI	ACTAGT	1 cut(s)	158
BfaI	CTAG	4 cut(s)	159, 401, 966, 1053
BfuAI	ACCTGC	1 cut(s)	120
BglII	AGATCT	1 cut(s)	1323
BisI	GCNGC	3 cut(s)	134, 1106, 1453
BlpI	GCTNAGC	1 cut(s)	235
BlsI	GCNGC	3 cut(s)	135, 1107, 1454
Bme1390I	CCNGG	2 cut(s)	1159, 1176
BmeT110I	CYCGRG	2 cut(s)	687, 702
BmiI	GGNNCC	3 cut(s)	151, 679, 1163
BmrFI	CCNGG	2 cut(s)	1159, 1176
BmrI	ACTGGG	1 cut(s)	621
BmsI	GCATC	4 cut(s)	1236, 1252, 1303, 1325
BmuI	ACTGGG	1 cut(s)	621
BpiI	GAAGAC	1 cut(s)	1313
BplI	GAGNNNNNCTC	4 cut(s)	625, 657, 696, 728
BpmI	CTGGAG	1 cut(s)	584
Bpu1102I	GCTNAGC	1 cut(s)	235
BpuMI	CCSGG	2 cut(s)	1159, 1176
Bsa29I	ATCGAT	1 cut(s)	1080
BsaBI	GATNNNNATC	1 cut(s)	1076
BsaI	GGTCTC	1 cut(s)	699
BsaJI	CCNNGG	2 cut(s)	55, 718
BsaWI	WCCGGW	2 cut(s)	1016, 1286
BsaXI	ACNNNNNCTCC	2 cut(s)	805, 835
Bsc4I	CCNNNNNNNGG	3 cut(s)	687, 1174, 1175
Bse118I	RCCGGY	1 cut(s)	1016
Bse1I	ACTGG	5 cut(s)	151, 260, 601, 616, 731
Bse8I	GATNNNNATC	1 cut(s)	1076
BseCI	ATCGAT	1 cut(s)	1080
BseDI	CCNNGG	2 cut(s)	55, 718
BseGI	GGATG	2 cut(s)	295, 1316
BseJI	GATNNNNATC	1 cut(s)	1076
BseLI	CCNNNNNNNGG	3 cut(s)	687, 1174, 1175
BseMII	CTCAG	3 cut(s)	249, 656, 840
BseNI	ACTGG	5 cut(s)	151, 260, 601, 616, 731
BseXI	GCAGC	2 cut(s)	145, 1092
BseYI	CCCAGC	2 cut(s)	1168, 1429
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	1161
BshTI	ACCGGT	1 cut(s)	1016
BshVI	ATCGAT	1 cut(s)	1080
BsiHKAI	GWGCWC	1 cut(s)	108
BsiHKCI	CYCGRG	2 cut(s)	687, 702
BsiSI	CCGG	4 cut(s)	1017, 1158, 1175, 1287
BslFI	GGGAC	1 cut(s)	1102
BslI	CCNNNNNNNGG	3 cut(s)	687, 1174, 1175
BsmAI	GTCTC	2 cut(s)	699, 827
BsmFI	GGGAC	1 cut(s)	1102
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	699
BsoBI	CYCGRG	2 cut(s)	687, 702
Bsp1286I	GDGCHC	1 cut(s)	108
Bsp143I	GATC	3 cut(s)	292, 1077, 1323
Bsp1720I	GCTNAGC	1 cut(s)	235
BspACI	CCGC	1 cut(s)	1065
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	248, 655, 839
BspDI	ATCGAT	1 cut(s)	1080
BspLI	GGNNCC	3 cut(s)	151, 679, 1163
BspMI	ACCTGC	1 cut(s)	120
BspT107I	GGYRCC	1 cut(s)	1161
BspTNI	GGTCTC	1 cut(s)	699
BsrFI	RCCGGY	1 cut(s)	1016
BsrI	ACTGG	5 cut(s)	151, 260, 601, 616, 731
BssAI	RCCGGY	1 cut(s)	1016
BssECI	CCNNGG	2 cut(s)	55, 718
BssMI	GATC	3 cut(s)	292, 1077, 1323
BssNAI	GTATAC	1 cut(s)	1408
BssT1I	CCWWGG	1 cut(s)	718
Bst1107I	GTATAC	1 cut(s)	1408
Bst4CI	ACNGT	6 cut(s)	427, 454, 875, 1093, 1152, 1276
Bst6I	CTCTTC	1 cut(s)	539
BstC8I	GCNNGC	3 cut(s)	166, 699, 1063
BstDEI	CTNAG	5 cut(s)	235, 642, 826, 1208, 1425
BstF5I	GGATG	2 cut(s)	295, 1316
BstKTI	GATC	3 cut(s)	295, 1080, 1326
BstMAI	GTCTC	2 cut(s)	699, 827
BstMBI	GATC	3 cut(s)	292, 1077, 1323
BstMWI	GCNNNNNNNGC	2 cut(s)	112, 1133
BstSCI	CCNGG	2 cut(s)	1157, 1174
BstV1I	GCAGC	2 cut(s)	145, 1092
BstV2I	GAAGAC	1 cut(s)	1313
BstX2I	RGATCY	1 cut(s)	1323
BstYI	RGATCY	1 cut(s)	1323
BstZ17I	GTATAC	1 cut(s)	1408
Bsu15I	ATCGAT	1 cut(s)	1080
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	1080
BtsCI	GGATG	2 cut(s)	295, 1316
BtsI	GCAGTG	1 cut(s)	478
BtsIMutI	CAGTG	3 cut(s)	478, 738, 834
BveI	ACCTGC	1 cut(s)	120
Cac8I	GCNNGC	3 cut(s)	166, 699, 1063
CaiI	CAGNNNCTG	1 cut(s)	902
Cfr10I	RCCGGY	1 cut(s)	1016
ClaI	ATCGAT	1 cut(s)	1080
Csp6I	GTAC	2 cut(s)	60, 1162
CspAI	ACCGGT	1 cut(s)	1016
CviAII	CATG	4 cut(s)	137, 299, 1300, 1449
CviQI	GTAC	2 cut(s)	60, 1162
DdeI	CTNAG	5 cut(s)	235, 642, 826, 1208, 1425
DpnI	GATC	3 cut(s)	294, 1079, 1325
DpnII	GATC	3 cut(s)	292, 1077, 1323
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	539
EarI	CTCTTC	1 cut(s)	539
Eco130I	CCWWGG	1 cut(s)	718
Eco31I	GGTCTC	1 cut(s)	699
Eco57I	CTGAAG	2 cut(s)	774, 1098
Eco88I	CYCGRG	2 cut(s)	687, 702
EcoRI	GAATTC	2 cut(s)	616, 943
EcoT14I	CCWWGG	1 cut(s)	718
EcoT22I	ATGCAT	1 cut(s)	1318
ErhI	CCWWGG	1 cut(s)	718
FaeI	CATG	4 cut(s)	140, 302, 1303, 1452
FalI	AAGNNNNNCTT	2 cut(s)	1235, 1267
FaqI	GGGAC	1 cut(s)	1102
FatI	CATG	4 cut(s)	136, 298, 1299, 1448
FblI	GTMKAC	2 cut(s)	462, 1407
Fnu4HI	GCNGC	3 cut(s)	134, 1106, 1453
FokI	GGATG	2 cut(s)	302, 1303
Fsp4HI	GCNGC	3 cut(s)	134, 1106, 1453
FspBI	CTAG	4 cut(s)	159, 401, 966, 1053
GluI	GCNGC	3 cut(s)	134, 1106, 1453
GsaI	CCCAGC	2 cut(s)	1172, 1433
GsuI	CTGGAG	1 cut(s)	584
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	4 cut(s)	1017, 1158, 1175, 1287
Hin1II	CATG	4 cut(s)	140, 302, 1303, 1452
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HinfI	GANTC	8 cut(s)	548, 637, 899, 926, 1072, 1082, 1421, 1445
HpaII	CCGG	4 cut(s)	1017, 1158, 1175, 1287
HphI	GGTGA	6 cut(s)	466, 683, 704, 1006, 1237, 1315
Hpy166II	GTNNAC	7 cut(s)	253, 463, 664, 878, 1120, 1228, 1408
Hpy188I	TCNGA	6 cut(s)	326, 367, 547, 645, 1077, 1146
Hpy188III	TCNNGA	4 cut(s)	183, 621, 704, 1220
Hpy8I	GTNNAC	7 cut(s)	253, 463, 664, 878, 1120, 1228, 1408
HpyAV	CCTTC	5 cut(s)	552, 804, 891, 1006, 1122
HpyCH4III	ACNGT	6 cut(s)	427, 454, 875, 1093, 1152, 1276
HpyCH4IV	ACGT	1 cut(s)	277
HpyF10VI	GCNNNNNNNGC	2 cut(s)	112, 1133
HpyF3I	CTNAG	5 cut(s)	235, 642, 826, 1208, 1425
HpySE526I	ACGT	1 cut(s)	277
Hsp92II	CATG	4 cut(s)	140, 302, 1303, 1452
KpnI	GGTACC	1 cut(s)	1165
Kzo9I	GATC	3 cut(s)	292, 1077, 1323
LmnI	GCTCC	2 cut(s)	683, 785
Lsp1109I	GCAGC	2 cut(s)	145, 1092
LweI	GCATC	4 cut(s)	1236, 1252, 1303, 1325
MaeI	CTAG	4 cut(s)	159, 401, 966, 1053
MaeII	ACGT	1 cut(s)	277
MaeIII	GTNAC	4 cut(s)	421, 473, 650, 1282
MalI	GATC	3 cut(s)	294, 1079, 1325
MboI	GATC	3 cut(s)	292, 1077, 1323
MboII	GAAGA	9 cut(s)	23, 106, 287, 526, 921, 1255, 1318, 1367, 1454
MflI	RGATCY	1 cut(s)	1323
MhlI	GDGCHC	1 cut(s)	108
MlyI	GAGTC	1 cut(s)	1415
MmeI	TCCRAC	1 cut(s)	267
MnlI	CCTC	9 cut(s)	65, 179, 540, 608, 627, 651, 1216, 1249, 1354
Mph1103I	ATGCAT	1 cut(s)	1318
MseI	TTAA	2 cut(s)	281, 383
MslI	CAYNNNNRTG	1 cut(s)	968
MspA1I	CMGCKG	1 cut(s)	239
MspI	CCGG	4 cut(s)	1017, 1158, 1175, 1287
MspR9I	CCNGG	2 cut(s)	1159, 1176
MwoI	GCNNNNNNNGC	2 cut(s)	112, 1133
NciI	CCSGG	2 cut(s)	1159, 1176
NdeII	GATC	3 cut(s)	292, 1077, 1323
NlaIII	CATG	4 cut(s)	140, 302, 1303, 1452
NlaIV	GGNNCC	3 cut(s)	151, 679, 1163
NmuCI	GTSAC	1 cut(s)	473
NsiI	ATGCAT	1 cut(s)	1318
PaeR7I	CTCGAG	1 cut(s)	702
PfeI	GAWTC	7 cut(s)	548, 637, 899, 926, 1072, 1082, 1445
PinAI	ACCGGT	1 cut(s)	1016
PkrI	GCNGC	3 cut(s)	135, 1107, 1454
PleI	GAGTC	1 cut(s)	1415
PpsI	GAGTC	1 cut(s)	1415
Psp1406I	AACGTT	1 cut(s)	277
PspFI	CCCAGC	2 cut(s)	1168, 1429
PspN4I	GGNNCC	3 cut(s)	151, 679, 1163
PstNI	CAGNNNCTG	1 cut(s)	902
PsuI	RGATCY	1 cut(s)	1323
PvuII	CAGCTG	1 cut(s)	239
RsaI	GTAC	2 cut(s)	61, 1163
RsaNI	GTAC	2 cut(s)	60, 1162
RseI	CAYNNNNRTG	1 cut(s)	968
SaqAI	TTAA	2 cut(s)	281, 383
SatI	GCNGC	3 cut(s)	134, 1106, 1453
Sau3AI	GATC	3 cut(s)	292, 1077, 1323
SchI	GAGTC	1 cut(s)	1415
ScrFI	CCNGG	2 cut(s)	1159, 1176
SduI	GDGCHC	1 cut(s)	108
SfaNI	GCATC	4 cut(s)	1236, 1252, 1303, 1325
Sfr274I	CTCGAG	1 cut(s)	702
SlaI	CTCGAG	1 cut(s)	702
SmiMI	CAYNNNNRTG	1 cut(s)	968
SmlI	CTYRAG	1 cut(s)	702
SmoI	CTYRAG	1 cut(s)	702
SpeI	ACTAGT	1 cut(s)	158
SsiI	CCGC	1 cut(s)	1065
SspMI	CTAG	4 cut(s)	159, 401, 966, 1053
StyD4I	CCNGG	2 cut(s)	1157, 1174
StyI	CCWWGG	1 cut(s)	718
TaaI	ACNGT	6 cut(s)	427, 454, 875, 1093, 1152, 1276
TaiI	ACGT	1 cut(s)	280
TaqI	TCGA	4 cut(s)	108, 703, 1080, 1278
TfiI	GAWTC	7 cut(s)	548, 637, 899, 926, 1072, 1082, 1445
Tru1I	TTAA	2 cut(s)	281, 383
Tru9I	TTAA	2 cut(s)	281, 383
TscAI	CASTG	3 cut(s)	478, 738, 834
TseFI	GTSAC	1 cut(s)	473
TseI	GCWGC	3 cut(s)	133, 1105, 1452
Tsp45I	GTSAC	1 cut(s)	473
TspDTI	ATGAA	5 cut(s)	287, 897, 1256, 1338, 1447
TspRI	CASTG	3 cut(s)	478, 738, 834
XapI	RAATTY	5 cut(s)	375, 616, 739, 943, 1290
XcmI	CCANNNNNNNNNTGG	2 cut(s)	608, 716
XhoI	CTCGAG	1 cut(s)	702
XmiI	GTMKAC	2 cut(s)	462, 1407
XspI	CTAG	4 cut(s)	159, 401, 966, 1053
Zsp2I	ATGCAT	1 cut(s)	1318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.