Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006014.1

Orthogroup ID

OG0007193

Physical Location & Seq

Genomic Coordinates Forward (+)

139869 .. 143357

Gene Structure 3489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006014.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

atgaaaatttcaagggtccagatttacttggtcaggctggtagccgcacagaaaatttctaccatcacagtttcttcatttccctctttacatttactccttcattcactacgccaaaggtcggagaattccttgattaccaattcgtactcacattcccgtaacttggaaagcgaagaggaccctgtgaagaagactcaagtggtggatgcccgggctagaaatatcagtcataatgttaggtgcactgagtgtgggagtcagtccattgaggattcacaagctgatatcgccattcttcttagaaagattcatgctgtgaagagtgacaaggagatctacaagaagcttgaggaggattttggggagacggtactttatgccccaaaatttgatgtgcagactgcaggcttatggctatcaccgcttgtggttgccggtgctgctgcaggtatttgggcttataagaagcacagacaaaggactaacgtccacgtcatggctttgaaccttattagaggtgttccactgaccccaaatgagaagcaaaccatgttagacctcctcacaccgccatcttcacgaggaaatataccttcatcttggtggaggtggagagaacaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0007275 GO:0008150 GO:0008152 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016020 GO:0016043 GO:0016491 GO:0017004 GO:0019866 GO:0022414 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CcmH

Protein Analysis

208

Amino Acids

23.58

Weight (kDa)

9.62

Isoelectric Point (pI)

59.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15220 AT1G15220
fragaria_vesca	FvH4_6g31840
malus_domestica	MD17G1190700.v1.1
prunus_persica	Prupe.6G357100_v2.0.a1 Prupe.6G357100_v2.0.a1 Prupe.6G357100_v2.0.a1
pyrus_communis	pycom17g19790
rosa_chinensis	RchiOBHm_Chr2g0139101 RchiOBHm_Chr2g0139151
rosa_laevigata	RLG00000019791
rosa_multiflora	Rmu_sc0001803.1_g000023 Rmu_sc0001803.1_g000031 Rmu_sc0006014.1_g000018 Rmu_sc0014249.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105620
rosa_rugosa	Rorug02G0354800 Rorug02G0355100
rosa_samantha	Rh2AG404800 Rh2BG415300 Rh2CG391100 Rh2DG424600 Rh2DG425000
rosa_wichuraiana	Rw2G033070 Rw2G033090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	465
Acc36I	ACCTGC	1 cut(s)	440
AccB7I	CCANNNNNTGG	1 cut(s)	499
AciI	CCGC	3 cut(s)	45, 425, 572
AcsI	RAATTY	4 cut(s)	6, 54, 127, 389
AdeI	CACNNNGTG	1 cut(s)	252
AfaI	GTAC	2 cut(s)	149, 375
AfiI	CCNNNNNNNGG	3 cut(s)	121, 166, 499
AgsI	TTSAA	2 cut(s)	12, 508
AjiI	CACGTC	1 cut(s)	496
AluBI	AGCT	2 cut(s)	284, 349
AluI	AGCT	2 cut(s)	284, 349
Alw21I	GWGCWC	1 cut(s)	248
Alw26I	GTCTC	1 cut(s)	362
Alw44I	GTGCAC	1 cut(s)	244
Ama87I	CYCGRG	1 cut(s)	213
ApaLI	GTGCAC	1 cut(s)	244
ApeKI	GCWGC	2 cut(s)	443, 446
ApoI	RAATTY	4 cut(s)	6, 54, 127, 389
AspS9I	GGNCC	2 cut(s)	16, 181
AsuC2I	CCSGG	2 cut(s)	214, 215
AsuHPI	GGTGA	1 cut(s)	414
AvaI	CYCGRG	1 cut(s)	213
AvaII	GGWCC	2 cut(s)	16, 181
BaeGI	GKGCMC	1 cut(s)	248
BauI	CACGAG	1 cut(s)	582
BbsI	GAAGAC	1 cut(s)	200
Bbv12I	GWGCWC	1 cut(s)	248
BbvI	GCAGC	2 cut(s)	430, 433
BccI	CCATC	2 cut(s)	71, 583
BcnI	CCSGG	2 cut(s)	214, 215
BcoDI	GTCTC	1 cut(s)	362
BfaI	CTAG	1 cut(s)	219
BfmI	CTRYAG	2 cut(s)	405, 447
BfuAI	ACCTGC	1 cut(s)	440
BglII	AGATCT	1 cut(s)	336
BisI	GCNGC	3 cut(s)	45, 444, 447
BlsI	GCNGC	3 cut(s)	46, 445, 448
Bme1390I	CCNGG	2 cut(s)	214, 215
Bme18I	GGWCC	2 cut(s)	16, 181
BmeT110I	CYCGRG	1 cut(s)	213
BmgBI	CACGTC	1 cut(s)	496
BmgT120I	GGNCC	2 cut(s)	16, 181
BmiI	GGNNCC	2 cut(s)	17, 183
BmrFI	CCNGG	2 cut(s)	214, 215
BmsI	GCATC	1 cut(s)	199
BoxI	GACNNNNGTC	1 cut(s)	488
BpiI	GAAGAC	1 cut(s)	200
BpuEI	CTTGAG	2 cut(s)	183, 371
BpuMI	CCSGG	2 cut(s)	214, 215
BsaJI	CCNNGG	1 cut(s)	213
BsaXI	ACNNNNNCTCC	2 cut(s)	81, 111
Bsc4I	CCNNNNNNNGG	3 cut(s)	121, 166, 499
Bse118I	RCCGGY	1 cut(s)	437
BseDI	CCNNGG	1 cut(s)	213
BseGI	GGATG	1 cut(s)	214
BseLI	CCNNNNNNNGG	3 cut(s)	121, 166, 499
BseMII	CTCAG	1 cut(s)	240
BseRI	GAGGAG	2 cut(s)	368, 554
BseSI	GKGCMC	1 cut(s)	248
BseXI	GCAGC	2 cut(s)	430, 433
BsgI	GTGCAG	1 cut(s)	419
BsiHKAI	GWGCWC	1 cut(s)	248
BsiHKCI	CYCGRG	1 cut(s)	213
BsiSI	CCGG	2 cut(s)	214, 438
BslI	CCNNNNNNNGG	3 cut(s)	121, 166, 499
BsmAI	GTCTC	1 cut(s)	362
BsmBI	CGTCTC	1 cut(s)	362
BsoBI	CYCGRG	1 cut(s)	213
Bsp1286I	GDGCHC	1 cut(s)	248
Bsp143I	GATC	1 cut(s)	336
BspACI	CCGC	3 cut(s)	45, 425, 572
BspCNI	CTCAG	1 cut(s)	241
BspLI	GGNNCC	2 cut(s)	17, 183
BspMAI	CTGCAG	2 cut(s)	409, 451
BspMI	ACCTGC	1 cut(s)	440
BsrFI	RCCGGY	1 cut(s)	437
BssAI	RCCGGY	1 cut(s)	437
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	1 cut(s)	336
BssSI	CACGAG	1 cut(s)	582
Bst2BI	CACGAG	1 cut(s)	582
Bst4CI	ACNGT	2 cut(s)	70, 373
Bst6I	CTCTTC	2 cut(s)	171, 317
BstC8I	GCNNGC	1 cut(s)	409
BstDEI	CTNAG	2 cut(s)	249, 302
BstF5I	GGATG	1 cut(s)	214
BstKTI	GATC	1 cut(s)	339
BstMAI	GTCTC	1 cut(s)	362
BstMBI	GATC	1 cut(s)	336
BstMWI	GCNNNNNNNGC	3 cut(s)	290, 424, 443
BstPAI	GACNNNNGTC	1 cut(s)	488
BstSCI	CCNGG	2 cut(s)	212, 213
BstSFI	CTRYAG	2 cut(s)	405, 447
BstSLI	GKGCMC	1 cut(s)	248
BstV1I	GCAGC	2 cut(s)	430, 433
BstV2I	GAAGAC	1 cut(s)	200
BstX2I	RGATCY	1 cut(s)	336
BstYI	RGATCY	1 cut(s)	336
BtrI	CACGTC	1 cut(s)	496
BtsCI	GGATG	1 cut(s)	214
BtsIMutI	CAGTG	2 cut(s)	246, 527
BveI	ACCTGC	1 cut(s)	440
Cac8I	GCNNGC	1 cut(s)	409
Cfr10I	RCCGGY	1 cut(s)	437
Cfr13I	GGNCC	2 cut(s)	16, 181
Cfr9I	CCCGGG	1 cut(s)	213
Csp6I	GTAC	2 cut(s)	148, 374
CviAII	CATG	3 cut(s)	314, 499, 553
CviJI	RGCY	9 cut(s)	37, 44, 218, 284, 349, 411, 418, 461, 503
CviKI_1	RGCY	9 cut(s)	37, 44, 218, 284, 349, 411, 418, 461, 503
CviQI	GTAC	2 cut(s)	148, 374
DdeI	CTNAG	2 cut(s)	249, 302
DpnI	GATC	1 cut(s)	338
DpnII	GATC	1 cut(s)	336
DraIII	CACNNNGTG	1 cut(s)	252
Eam1104I	CTCTTC	2 cut(s)	171, 317
EarI	CTCTTC	2 cut(s)	171, 317
Eco32I	GATATC	1 cut(s)	289
Eco47I	GGWCC	2 cut(s)	16, 181
Eco88I	CYCGRG	1 cut(s)	213
EcoO109I	RGGNCCY	1 cut(s)	181
EcoRI	GAATTC	1 cut(s)	127
EcoRV	GATATC	1 cut(s)	289
Esp3I	CGTCTC	1 cut(s)	362
FaeI	CATG	3 cut(s)	317, 502, 556
FaiI	YATR	8 cut(s)	234, 315, 381, 415, 465, 500, 554, 593
FatI	CATG	3 cut(s)	313, 498, 552
Fnu4HI	GCNGC	3 cut(s)	45, 444, 447
FokI	GGATG	1 cut(s)	221
Fsp4HI	GCNGC	3 cut(s)	45, 444, 447
FspBI	CTAG	1 cut(s)	219
GluI	GCNGC	3 cut(s)	45, 444, 447
HapII	CCGG	2 cut(s)	214, 438
Hin1II	CATG	3 cut(s)	317, 502, 556
HindIII	AAGCTT	1 cut(s)	347
HinfI	GANTC	4 cut(s)	196, 259, 275, 310
HpaII	CCGG	2 cut(s)	214, 438
HphI	GGTGA	1 cut(s)	414
Hpy166II	GTNNAC	2 cut(s)	246, 493
Hpy188I	TCNGA	1 cut(s)	124
Hpy188III	TCNNGA	2 cut(s)	19, 582
Hpy8I	GTNNAC	2 cut(s)	246, 493
HpyAV	CCTTC	2 cut(s)	110, 606
HpyCH4III	ACNGT	2 cut(s)	70, 373
HpyCH4IV	ACGT	2 cut(s)	489, 495
HpyCH4V	TGCA	4 cut(s)	246, 400, 407, 449
HpyF10VI	GCNNNNNNNGC	3 cut(s)	290, 424, 443
HpyF3I	CTNAG	2 cut(s)	249, 302
HpySE526I	ACGT	2 cut(s)	489, 495
Hsp92II	CATG	3 cut(s)	317, 502, 556
Kzo9I	GATC	1 cut(s)	336
LpnPI	CCDG	8 cut(s)	19, 23, 32, 198, 227, 393, 435, 451
Lsp1109I	GCAGC	2 cut(s)	430, 433
LweI	GCATC	1 cut(s)	199
MaeI	CTAG	1 cut(s)	219
MaeII	ACGT	2 cut(s)	489, 495
MaeIII	GTNAC	2 cut(s)	161, 326
MalI	GATC	1 cut(s)	338
MboI	GATC	1 cut(s)	336
MboII	GAAGA	7 cut(s)	66, 188, 202, 205, 290, 334, 570
MflI	RGATCY	1 cut(s)	336
MhlI	GDGCHC	1 cut(s)	248
MluCI	AATT	5 cut(s)	6, 54, 127, 142, 389
MlyI	GAGTC	2 cut(s)	190, 268
MmeI	TCCRAC	1 cut(s)	102
MslI	CAYNNNNRTG	1 cut(s)	604
MspI	CCGG	2 cut(s)	214, 438
MspR9I	CCNGG	2 cut(s)	214, 215
MwoI	GCNNNNNNNGC	3 cut(s)	290, 424, 443
NciI	CCSGG	2 cut(s)	214, 215
NdeII	GATC	1 cut(s)	336
NlaIII	CATG	3 cut(s)	317, 502, 556
NlaIV	GGNNCC	2 cut(s)	17, 183
NmuCI	GTSAC	1 cut(s)	326
PfeI	GAWTC	2 cut(s)	275, 310
PflMI	CCANNNNNTGG	1 cut(s)	499
PkrI	GCNGC	3 cut(s)	46, 445, 448
PleI	GAGTC	2 cut(s)	190, 267
PpsI	GAGTC	2 cut(s)	190, 267
PpuMI	RGGWCCY	1 cut(s)	181
PshAI	GACNNNNGTC	1 cut(s)	488
PsiI	TTATAA	1 cut(s)	465
Psp5II	RGGWCCY	1 cut(s)	181
PspN4I	GGNNCC	2 cut(s)	17, 183
PspPI	GGNCC	2 cut(s)	16, 181
PspPPI	RGGWCCY	1 cut(s)	181
PstI	CTGCAG	2 cut(s)	409, 451
PsuI	RGATCY	1 cut(s)	336
RsaI	GTAC	2 cut(s)	149, 375
RsaNI	GTAC	2 cut(s)	148, 374
RseI	CAYNNNNRTG	1 cut(s)	604
SatI	GCNGC	3 cut(s)	45, 444, 447
Sau3AI	GATC	1 cut(s)	336
Sau96I	GGNCC	2 cut(s)	16, 181
SchI	GAGTC	2 cut(s)	190, 268
ScrFI	CCNGG	2 cut(s)	214, 215
SduI	GDGCHC	1 cut(s)	248
SfaNI	GCATC	1 cut(s)	199
SfcI	CTRYAG	2 cut(s)	405, 447
SinI	GGWCC	2 cut(s)	16, 181
SmaI	CCCGGG	1 cut(s)	215
SmiMI	CAYNNNNRTG	1 cut(s)	604
SmlI	CTYRAG	2 cut(s)	198, 350
SmoI	CTYRAG	2 cut(s)	198, 350
SrfI	GCCCGGGC	1 cut(s)	215
Sse9I	AATT	5 cut(s)	6, 54, 127, 142, 389
SsiI	CCGC	3 cut(s)	45, 425, 572
SspMI	CTAG	1 cut(s)	219
StyD4I	CCNGG	2 cut(s)	212, 213
TaaI	ACNGT	2 cut(s)	70, 373
TaiI	ACGT	2 cut(s)	492, 498
TasI	AATT	5 cut(s)	6, 54, 127, 142, 389
TauI	GCSGC	1 cut(s)	47
TfiI	GAWTC	2 cut(s)	275, 310
TscAI	CASTG	2 cut(s)	253, 534
TseFI	GTSAC	1 cut(s)	326
TseI	GCWGC	2 cut(s)	443, 446
Tsp45I	GTSAC	1 cut(s)	326
TspDTI	ATGAA	5 cut(s)	17, 66, 92, 302, 588
TspMI	CCCGGG	1 cut(s)	213
TspRI	CASTG	2 cut(s)	253, 534
Van91I	CCANNNNNTGG	1 cut(s)	499
VneI	GTGCAC	1 cut(s)	244
VpaK11BI	GGWCC	2 cut(s)	16, 181
XapI	RAATTY	4 cut(s)	6, 54, 127, 389
XmaI	CCCGGG	1 cut(s)	213
XspI	CTAG	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.