Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002087

Physical Location & Seq

Genomic Coordinates Reverse (-)

6024636 .. 6027565

Gene Structure 2930 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G17520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGGAAATCAGAAGCTCAAATGGACGGCGGAGGAAGAGGAGGCGTTACTCGCCGGAGTTAGGAAGCATGGCCCTGGAAAGTGGAAGAATATTCTCCGCGATCCTGAATTAGCTGAGCAGCTCTCTAGTCGCTCTAACATCGACCTCAAGGATAAATGGCGTAATTTAAGTGTTGCTCCTGGTATTCAAGGCTCTAAGGATAAGATACGGACACCAAAAATCAAAGCTGCTGCTTTTCATCTGGCTGCCGCTGCTGCTGCCGCTATTGTAACTCCTACTCATAGTGGTCACTCTTCTCCAGTTGCTACTCTTCCCCGAAGTGGATCTTCTGATTTGAGCATTGATGATAGTTTTAACATTGTAGTTGATCCAAAGAATGCTCCCAGGTATGATGGAATGATATTTGAAGCTCTTTCAAACTTGACGGATGCTAATGGATCTGATGTCAGCGCAATTTTCAACTTCATTGAGCAACGACAAGAAGTGCCACCAAATTTCAGGAGGATGCTTAGTTCAAGATTGAGGAGGCTTGCAGCTCAGGGAAAGCTTGAAAAGGTTAGCCACTTAAAATCAACACAGAACTTCTATAAGATGAATGATAATAGCTTGGTACAAAGAACACCACATGTAGCGAGACCAAAAGAGAGCAACACGAAATCCCGGCAGCAGACAAACAGTCAGGGACCCTCTATTTCACAGCAGATTGTTGAAGCTTCAATAACAGCAGCTTATAAGCTCGTAGAAGTAGAGAACAAATTAGATGTGTCGAAAGGAGCTGCAGAAGAGATAGAGAGACTGATGAAACTGGCAGAAGAGGCTGATGAGATGCTAGTGATAGCGAGAGAGATGCACGAAGAATGTAGTCAGGGAAAGATTATGTACTTGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000784 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0034641 GO:0042162 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0046677 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098687 GO:0140110 GO:1901360 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

296

Amino Acids

32.78

Weight (kDa)

9.01

Isoelectric Point (pI)

48.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	5 - 56	2.9e-09	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	8 - 56	7.4e-08	Myb-like DNA-binding domain
Linker_histone	PF00538	128 - 188	1.2e-10	linker histone H1 and H5 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17520 AT1G17520 AT1G17520 AT1G17520 AT1G72740 AT1G72740
fragaria_vesca	FvH4_1g07940 FvH4_1g07940 FvH4_6g34130
malus_domestica	MD02G1083400.v1.1 MD09G1188600.v1.1 MD15G1211100.v1.1
prunus_persica	Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.7G205700_v2.0.a1 Prupe.7G205700_v2.0.a1 Prupe.7G205700_v2.0.a1
pyrus_communis	pycom02g06590 pycom09g10570 pycom15g18710
rosa_chinensis	RchiOBHm_Chr2g0093821 RchiOBHm_Chr2g0144441
rosa_laevigata	RLG00000016439 RLG00000020081
rosa_multiflora	Rmu_co8254463.1_g000001 Rmu_sc0002126.1_g000001 Rmu_sc0003027.1_g000017 Rmu_sc0017523.1_g000002
rosa_roxburghii	Rroxscaffold_2G00101310 Rroxscaffold_2G00147780
rosa_rugosa	Rorug02G0040100 Rorug02G0386600
rosa_samantha	Rh2AG086500 Rh2AG438900 Rh2BG087000 Rh2BG449200 Rh2CG089400 Rh2CG425900 Rh2DG085000 Rh2DG458900
rosa_wichuraiana	Rw2G035910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	732
AccII	CGCG	1 cut(s)	99
AciI	CCGC	4 cut(s)	29, 97, 249, 261
AclWI	GGATC	4 cut(s)	95, 331, 362, 445
AcsI	RAATTY	1 cut(s)	493
AfaI	GTAC	2 cut(s)	612, 881
AfiI	CCNNNNNNNGG	2 cut(s)	60, 320
AflIII	ACRYGT	1 cut(s)	625
AgsI	TTSAA	9 cut(s)	188, 407, 417, 460, 516, 551, 710, 717, 886
AhdI	GACNNNNNGTC	1 cut(s)	675
AjnI	CCWGG	3 cut(s)	73, 178, 383
AloI	GAACNNNNNNTCC	2 cut(s)	496, 528
Alw26I	GTCTC	2 cut(s)	628, 787
AlwI	GGATC	4 cut(s)	95, 331, 362, 445
AoxI	GGCC	1 cut(s)	70
ApoI	RAATTY	1 cut(s)	493
AspLEI	GCGC	1 cut(s)	452
AspS9I	GGNCC	2 cut(s)	71, 683
AsuC2I	CCSGG	1 cut(s)	661
AvaII	GGWCC	1 cut(s)	683
BccI	CCATC	1 cut(s)	386
BceAI	ACGGC	1 cut(s)	42
BcgI	CGANNNNNNTGC	2 cut(s)	829, 863
BciT130I	CCWGG	3 cut(s)	75, 180, 385
BcnI	CCSGG	1 cut(s)	661
BcoDI	GTCTC	2 cut(s)	628, 787
BfaI	CTAG	2 cut(s)	126, 830
BfmI	CTRYAG	1 cut(s)	777
BlpI	GCTNAGC	1 cut(s)	114
Bme1390I	CCNGG	4 cut(s)	75, 180, 385, 661
Bme18I	GGWCC	1 cut(s)	683
BmeRI	GACNNNNNGTC	1 cut(s)	675
BmgT120I	GGNCC	2 cut(s)	71, 683
BmiI	GGNNCC	2 cut(s)	684, 685
BmrFI	CCNGG	4 cut(s)	75, 180, 385, 661
BmsI	GCATC	4 cut(s)	418, 495, 816, 837
BplI	GAGNNNNNCTC	2 cut(s)	107, 139
BpmI	CTGGAG	1 cut(s)	282
Bpu10I	CCTNAGC	1 cut(s)	537
Bpu1102I	GCTNAGC	1 cut(s)	114
BpuEI	CTTGAG	1 cut(s)	131
BpuMI	CCSGG	1 cut(s)	661
BsaI	GGTCTC	1 cut(s)	628
BsaJI	CCNNGG	2 cut(s)	73, 383
Bsc4I	CCNNNNNNNGG	2 cut(s)	60, 320
Bse1I	ACTGG	2 cut(s)	299, 810
BseBI	CCWGG	3 cut(s)	75, 180, 385
BseDI	CCNNGG	2 cut(s)	73, 383
BseGI	GGATG	2 cut(s)	433, 510
BseLI	CCNNNNNNNGG	2 cut(s)	60, 320
BseMII	CTCAG	2 cut(s)	105, 551
BseNI	ACTGG	2 cut(s)	299, 810
BseRI	GAGGAG	2 cut(s)	53, 538
Bsh1236I	CGCG	1 cut(s)	99
BshFI	GGCC	1 cut(s)	72
BsiSI	CCGG	2 cut(s)	54, 661
BslFI	GGGAC	1 cut(s)	696
BslI	CCNNNNNNNGG	2 cut(s)	60, 320
BsmAI	GTCTC	2 cut(s)	628, 787
BsmFI	GGGAC	1 cut(s)	696
BsmI	GAATGC	1 cut(s)	382
BsnI	GGCC	1 cut(s)	72
Bso31I	GGTCTC	1 cut(s)	628
Bsp143I	GATC	4 cut(s)	100, 323, 367, 437
Bsp1720I	GCTNAGC	1 cut(s)	114
BspACI	CCGC	4 cut(s)	29, 97, 249, 261
BspANI	GGCC	1 cut(s)	72
BspCNI	CTCAG	2 cut(s)	106, 550
BspFNI	CGCG	1 cut(s)	99
BspLI	GGNNCC	2 cut(s)	684, 685
BspMAI	CTGCAG	1 cut(s)	781
BspPI	GGATC	4 cut(s)	95, 331, 362, 445
BspTNI	GGTCTC	1 cut(s)	628
BsrI	ACTGG	2 cut(s)	299, 810
BssECI	CCNNGG	2 cut(s)	73, 383
BssMI	GATC	4 cut(s)	100, 323, 367, 437
Bst2UI	CCWGG	3 cut(s)	75, 180, 385
Bst4CI	ACNGT	1 cut(s)	677
Bst6I	CTCTTC	5 cut(s)	30, 298, 315, 777, 807
BstC8I	GCNNGC	1 cut(s)	531
BstDEI	CTNAG	4 cut(s)	114, 195, 509, 537
BstF5I	GGATG	2 cut(s)	433, 510
BstFNI	CGCG	1 cut(s)	99
BstHHI	GCGC	1 cut(s)	452
BstKTI	GATC	4 cut(s)	103, 326, 370, 440
BstMAI	GTCTC	2 cut(s)	628, 787
BstMBI	GATC	4 cut(s)	100, 323, 367, 437
BstMWI	GCNNNNNNNGC	6 cut(s)	50, 251, 254, 257, 260, 815
BstNI	CCWGG	3 cut(s)	75, 180, 385
BstNSI	RCATGY	1 cut(s)	629
BstSCI	CCNGG	4 cut(s)	73, 178, 383, 659
BstSFI	CTRYAG	1 cut(s)	777
BstUI	CGCG	1 cut(s)	99
BstX2I	RGATCY	2 cut(s)	323, 437
BstYI	RGATCY	2 cut(s)	323, 437
BsuRI	GGCC	1 cut(s)	72
BtsCI	GGATG	2 cut(s)	433, 510
Cac8I	GCNNGC	1 cut(s)	531
CfoI	GCGC	1 cut(s)	452
Cfr13I	GGNCC	2 cut(s)	71, 683
Csp6I	GTAC	2 cut(s)	611, 880
CviAII	CATG	2 cut(s)	68, 626
CviQI	GTAC	2 cut(s)	611, 880
DdeI	CTNAG	4 cut(s)	114, 195, 509, 537
DpnI	GATC	4 cut(s)	102, 325, 369, 439
DpnII	GATC	4 cut(s)	100, 323, 367, 437
DriI	GACNNNNNGTC	1 cut(s)	675
Eam1104I	CTCTTC	5 cut(s)	30, 298, 315, 777, 807
Eam1105I	GACNNNNNGTC	1 cut(s)	675
EarI	CTCTTC	5 cut(s)	30, 298, 315, 777, 807
EciI	GGCGGA	1 cut(s)	44
Eco31I	GGTCTC	1 cut(s)	628
Eco47I	GGWCC	1 cut(s)	683
EcoO109I	RGGNCCY	1 cut(s)	683
EcoRII	CCWGG	3 cut(s)	73, 178, 383
FaeI	CATG	2 cut(s)	71, 629
FaiI	YATR	7 cut(s)	69, 282, 390, 588, 627, 732, 878
FalI	AAGNNNNNCTT	2 cut(s)	310, 342
FaqI	GGGAC	1 cut(s)	696
FatI	CATG	2 cut(s)	67, 625
FokI	GGATG	2 cut(s)	440, 517
FspBI	CTAG	2 cut(s)	126, 830
GlaI	GCGC	1 cut(s)	451
GsuI	CTGGAG	1 cut(s)	282
HaeIII	GGCC	1 cut(s)	72
HapII	CCGG	2 cut(s)	54, 661
HhaI	GCGC	1 cut(s)	452
Hin1II	CATG	2 cut(s)	71, 629
Hin6I	GCGC	1 cut(s)	450
HinP1I	GCGC	1 cut(s)	450
HindIII	AAGCTT	2 cut(s)	545, 711
HpaII	CCGG	2 cut(s)	54, 661
Hpy188I	TCNGA	3 cut(s)	12, 331, 442
Hpy188III	TCNNGA	3 cut(s)	104, 499, 516
HpyCH4III	ACNGT	1 cut(s)	677
HpyCH4V	TGCA	3 cut(s)	533, 779, 850
HpyF10VI	GCNNNNNNNGC	6 cut(s)	50, 251, 254, 257, 260, 815
HpyF3I	CTNAG	4 cut(s)	114, 195, 509, 537
Hsp92II	CATG	2 cut(s)	71, 629
HspAI	GCGC	1 cut(s)	450
KflI	GGGWCCC	1 cut(s)	683
Kzo9I	GATC	4 cut(s)	100, 323, 367, 437
LmnI	GCTCC	3 cut(s)	181, 385, 773
LweI	GCATC	4 cut(s)	418, 495, 816, 837
MaeI	CTAG	2 cut(s)	126, 830
MaeIII	GTNAC	3 cut(s)	45, 268, 287
MalI	GATC	4 cut(s)	102, 325, 369, 439
MboI	GATC	4 cut(s)	100, 323, 367, 437
MboII	GAAGA	8 cut(s)	47, 97, 285, 302, 318, 794, 824, 866
MflI	RGATCY	2 cut(s)	323, 437
MluCI	AATT	6 cut(s)	107, 163, 453, 493, 755, 886
MnlI	CCTC	9 cut(s)	25, 31, 34, 155, 495, 516, 519, 697, 808
MseI	TTAA	3 cut(s)	167, 354, 566
MspA1I	CMGCKG	1 cut(s)	251
MspI	CCGG	2 cut(s)	54, 661
MspR9I	CCNGG	4 cut(s)	75, 180, 385, 661
Mva1269I	GAATGC	1 cut(s)	382
MvaI	CCWGG	3 cut(s)	75, 180, 385
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	6 cut(s)	50, 251, 254, 257, 260, 815
NciI	CCSGG	1 cut(s)	661
NdeII	GATC	4 cut(s)	100, 323, 367, 437
NlaIII	CATG	2 cut(s)	71, 629
NlaIV	GGNNCC	2 cut(s)	684, 685
NmuCI	GTSAC	1 cut(s)	287
NspI	RCATGY	1 cut(s)	629
PciI	ACATGT	1 cut(s)	625
PctI	GAATGC	1 cut(s)	382
PpuMI	RGGWCCY	1 cut(s)	683
PscI	ACATGT	1 cut(s)	625
PsiI	TTATAA	1 cut(s)	732
Psp5II	RGGWCCY	1 cut(s)	683
Psp6I	CCWGG	3 cut(s)	73, 178, 383
PspGI	CCWGG	3 cut(s)	73, 178, 383
PspN4I	GGNNCC	2 cut(s)	684, 685
PspPI	GGNCC	2 cut(s)	71, 683
PspPPI	RGGWCCY	1 cut(s)	683
PstI	CTGCAG	1 cut(s)	781
PsuI	RGATCY	2 cut(s)	323, 437
RsaI	GTAC	2 cut(s)	612, 881
RsaNI	GTAC	2 cut(s)	611, 880
SaqAI	TTAA	3 cut(s)	167, 354, 566
Sau3AI	GATC	4 cut(s)	100, 323, 367, 437
Sau96I	GGNCC	2 cut(s)	71, 683
ScrFI	CCNGG	4 cut(s)	75, 180, 385, 661
SfaNI	GCATC	4 cut(s)	418, 495, 816, 837
SfcI	CTRYAG	1 cut(s)	777
SinI	GGWCC	1 cut(s)	683
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	6 cut(s)	107, 163, 453, 493, 755, 886
SsiI	CCGC	4 cut(s)	29, 97, 249, 261
SspI	AATATT	1 cut(s)	91
SspMI	CTAG	2 cut(s)	126, 830
StyD4I	CCNGG	4 cut(s)	73, 178, 383, 659
TaaI	ACNGT	1 cut(s)	677
TaqI	TCGA	2 cut(s)	141, 767
TasI	AATT	6 cut(s)	107, 163, 453, 493, 755, 886
TatI	WGTACW	1 cut(s)	879
TauI	GCSGC	2 cut(s)	251, 263
Tru1I	TTAA	3 cut(s)	167, 354, 566
Tru9I	TTAA	3 cut(s)	167, 354, 566
TseFI	GTSAC	1 cut(s)	287
Tsp45I	GTSAC	1 cut(s)	287
TspDTI	ATGAA	4 cut(s)	227, 454, 608, 815
TspGWI	ACGGA	2 cut(s)	223, 440
VpaK11BI	GGWCC	1 cut(s)	683
XapI	RAATTY	1 cut(s)	493
XceI	RCATGY	1 cut(s)	629
XspI	CTAG	2 cut(s)	126, 830

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.