Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0002087

Physical Location & Seq

Genomic Coordinates Reverse (-)

4191870 .. 4196811

Gene Structure 4942 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g07940.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGGAAATCCGAAGCAAAAATGGACGTCGGAGGAAGAAGAGGCGCTCCGAGCCGGCGTCCGAAAGCACGGCACCGGAAAGTGGAAGGACATCCAGAAAGACCCCGAGTTCAATCCCTTCCTCTCCTCTCGCTCCAATATTGATCTCAAGGACAAATGGCGGAATATGTCTGTTAGTGGCGGCATGGGAGGGCCTAGAGAAAAAGCAAAGACGACAAGACCAAGAGATAGTCCTGTTACACTATTCGCCAACCCCACACCACAGACATCTGCTGCTGCTTCTGTTAAACGTGAGCCGTCAGCAGCTCTTCTCAAACGTGAGCCATCATCAGCTCCTGTCAAACGTGAGGCAGCGTCATCCCTTGTCAAAGGCGAGCCAGTAGCTGATGATTCTCCAACAGAAGCAAAAACTGAAGCAAAAACAGCTCCACTGTACAATGCATTGATTTTTGAAGCACTTGAAACTTCAACAGATCCAAATGGATTGGAGACTGGTGCTATTGCTAACTTTATTGAGCAAAGGTTAGTTTTGGAGAAAAAGAATGAGGTGCCCCAAAATTTTAGAAGGTTATTGAGCTCAAGGTTAAGAAGGCTGGTTGCACAAGAAAAACTTGAAAAGTTTCAAAATTGCTTCAAGATGAAAGGCGACTCTTCCGCTAATACAAAAGTACCACCGCCCCCAACACCACCGGTCCCAAACGCCCCAAAACAGAATGAGACACCAGCGGCTCCAAAACAGAATGAGACACCGCCGGCTCCAAAACAGAATGATGTCCAACTTACGCAATTGCAGAGTAGTGCTGATGTAATCCCCTATGAAACAGTTGAGGAAGCGGCAGTGGCTGCTGCCTACAAGATTGCCGAAGCAGAAAACAAATCATTTGTGGCTGCAGAAGCAGTGAAAGAGTCGGAGAGGGTTTCACAGATGTTTGAAGACACAAACTCAGTGCTCCAGTTGGCAGAAGAGTTTCTTAAGAAATGTTTGCAAGGTGAAGTTCTTCTGCTCGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0003697 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0031974 GO:0031981 GO:0042162 GO:0042802 GO:0042803 GO:0043047 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0046983 GO:0070013 GO:0097159 GO:0098847 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

337

Amino Acids

36.86

Weight (kDa)

8.32

Isoelectric Point (pI)

58.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	5 - 56	5.3e-09	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	8 - 56	2.7e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17520 AT1G17520 AT1G17520 AT1G17520 AT1G72740 AT1G72740
fragaria_vesca	FvH4_1g07940 FvH4_1g07940 FvH4_6g34130
malus_domestica	MD02G1083400.v1.1 MD09G1188600.v1.1 MD15G1211100.v1.1
prunus_persica	Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.7G205700_v2.0.a1 Prupe.7G205700_v2.0.a1 Prupe.7G205700_v2.0.a1
pyrus_communis	pycom02g06590 pycom09g10570 pycom15g18710
rosa_chinensis	RchiOBHm_Chr2g0093821 RchiOBHm_Chr2g0144441
rosa_laevigata	RLG00000016439 RLG00000020081
rosa_multiflora	Rmu_co8254463.1_g000001 Rmu_sc0002126.1_g000001 Rmu_sc0003027.1_g000017 Rmu_sc0017523.1_g000002
rosa_roxburghii	Rroxscaffold_2G00101310 Rroxscaffold_2G00147780
rosa_rugosa	Rorug02G0040100 Rorug02G0386600
rosa_samantha	Rh2AG086500 Rh2AG438900 Rh2BG087000 Rh2BG449200 Rh2CG089400 Rh2CG425900 Rh2DG085000 Rh2DG458900
rosa_wichuraiana	Rw2G035910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	29
AccB1I	GGYRCC	2 cut(s)	71, 547
AciI	CCGC	7 cut(s)	160, 180, 654, 674, 725, 749, 833
AclWI	GGATC	1 cut(s)	467
AcsI	RAATTY	1 cut(s)	556
AcuI	CTGAAG	1 cut(s)	432
AcyI	GRCGYC	2 cut(s)	26, 57
AfaI	GTAC	2 cut(s)	434, 669
AfiI	CCNNNNNNNGG	1 cut(s)	81
AflII	CTTAAG	1 cut(s)	971
AgeI	ACCGGT	1 cut(s)	688
AgsI	TTSAA	8 cut(s)	112, 452, 461, 468, 614, 623, 634, 932
AluBI	AGCT	5 cut(s)	305, 332, 383, 425, 576
AluI	AGCT	5 cut(s)	305, 332, 383, 425, 576
Alw21I	GWGCWC	2 cut(s)	578, 951
Alw26I	GTCTC	3 cut(s)	482, 710, 737
AlwI	GGATC	1 cut(s)	467
AlwNI	CAGNNNCTG	3 cut(s)	335, 383, 842
Ama87I	CYCGRG	1 cut(s)	104
AoxI	GGCC	1 cut(s)	191
ApeKI	GCWGC	7 cut(s)	272, 275, 302, 350, 842, 845, 887
ApoI	RAATTY	1 cut(s)	556
AsiGI	ACCGGT	1 cut(s)	688
Asp700I	GAANNNNTTC	3 cut(s)	618, 966, 996
AspLEI	GCGC	1 cut(s)	46
AspS9I	GGNCC	2 cut(s)	191, 691
AsuHPI	GGTGA	1 cut(s)	1001
AvaI	CYCGRG	1 cut(s)	104
AvaII	GGWCC	1 cut(s)	691
BaeGI	GKGCMC	1 cut(s)	552
BaeI	ACNNNNGTAYC	2 cut(s)	651, 684
BanI	GGYRCC	2 cut(s)	71, 547
BanII	GRGCYC	1 cut(s)	578
BauI	CACGAG	1 cut(s)	1004
BbsI	GAAGAC	1 cut(s)	939
Bbv12I	GWGCWC	2 cut(s)	578, 951
BbvI	GCAGC	7 cut(s)	259, 262, 314, 362, 829, 832, 874
BccI	CCATC	1 cut(s)	331
BceAI	ACGGC	2 cut(s)	85, 280
BcoDI	GTCTC	3 cut(s)	482, 710, 737
BfaI	CTAG	1 cut(s)	195
BfmI	CTRYAG	1 cut(s)	888
BfoI	RGCGCY	1 cut(s)	47
BfrI	CTTAAG	1 cut(s)	971
Bme18I	GGWCC	1 cut(s)	691
BmeT110I	CYCGRG	1 cut(s)	104
BmgT120I	GGNCC	2 cut(s)	191, 691
BmiI	GGNNCC	5 cut(s)	73, 549, 693, 729, 756
BpiI	GAAGAC	1 cut(s)	939
BpmI	CTGGAG	1 cut(s)	935
BpuEI	CTTGAG	2 cut(s)	131, 562
BsaHI	GRCGYC	2 cut(s)	26, 57
BsaWI	WCCGGW	2 cut(s)	74, 688
Bsc4I	CCNNNNNNNGG	1 cut(s)	81
Bse118I	RCCGGY	3 cut(s)	53, 688, 751
Bse1I	ACTGG	3 cut(s)	377, 496, 952
BseGI	GGATG	2 cut(s)	90, 356
BseLI	CCNNNNNNNGG	1 cut(s)	81
BseMII	CTCAG	1 cut(s)	957
BseNI	ACTGG	3 cut(s)	377, 496, 952
BseRI	GAGGAG	1 cut(s)	115
BseSI	GKGCMC	1 cut(s)	552
BseXI	GCAGC	7 cut(s)	259, 262, 314, 362, 829, 832, 874
BshFI	GGCC	1 cut(s)	193
BshNI	GGYRCC	2 cut(s)	71, 547
BshTI	ACCGGT	1 cut(s)	688
BsiHKAI	GWGCWC	2 cut(s)	578, 951
BsiHKCI	CYCGRG	1 cut(s)	104
BsiSI	CCGG	4 cut(s)	54, 75, 689, 752
BslFI	GGGAC	1 cut(s)	677
BslI	CCNNNNNNNGG	1 cut(s)	81
BsmAI	GTCTC	3 cut(s)	482, 710, 737
BsmFI	GGGAC	1 cut(s)	677
BsnI	GGCC	1 cut(s)	193
BsoBI	CYCGRG	1 cut(s)	104
Bsp1286I	GDGCHC	3 cut(s)	552, 578, 951
Bsp1407I	TGTACA	1 cut(s)	432
Bsp143I	GATC	2 cut(s)	142, 472
BspACI	CCGC	7 cut(s)	160, 180, 654, 674, 725, 749, 833
BspANI	GGCC	1 cut(s)	193
BspCNI	CTCAG	1 cut(s)	956
BspLI	GGNNCC	5 cut(s)	73, 549, 693, 729, 756
BspMAI	CTGCAG	1 cut(s)	892
BspPI	GGATC	1 cut(s)	467
BspQI	GCTCTTC	1 cut(s)	312
BspT107I	GGYRCC	2 cut(s)	71, 547
BspTI	CTTAAG	1 cut(s)	971
BsrFI	RCCGGY	3 cut(s)	53, 688, 751
BsrGI	TGTACA	1 cut(s)	432
BsrI	ACTGG	3 cut(s)	377, 496, 952
BssAI	RCCGGY	3 cut(s)	53, 688, 751
BssMI	GATC	2 cut(s)	142, 472
BssNI	GRCGYC	2 cut(s)	26, 57
BssSI	CACGAG	1 cut(s)	1004
Bst2BI	CACGAG	1 cut(s)	1004
Bst4CI	ACNGT	2 cut(s)	432, 823
Bst6I	CTCTTC	4 cut(s)	33, 312, 655, 957
BstACI	GRCGYC	2 cut(s)	26, 57
BstAFI	CTTAAG	1 cut(s)	971
BstAPI	GCANNNNNTGC	1 cut(s)	842
BstAUI	TGTACA	1 cut(s)	432
BstC8I	GCNNGC	3 cut(s)	55, 374, 753
BstDEI	CTNAG	1 cut(s)	943
BstF5I	GGATG	2 cut(s)	90, 356
BstH2I	RGCGCY	1 cut(s)	47
BstHHI	GCGC	1 cut(s)	46
BstKTI	GATC	2 cut(s)	145, 475
BstMAI	GTCTC	3 cut(s)	482, 710, 737
BstMBI	GATC	2 cut(s)	142, 472
BstMWI	GCNNNNNNNGC	5 cut(s)	50, 422, 839, 842, 893
BstSFI	CTRYAG	1 cut(s)	888
BstSLI	GKGCMC	1 cut(s)	552
BstV1I	GCAGC	7 cut(s)	259, 262, 314, 362, 829, 832, 874
BstV2I	GAAGAC	1 cut(s)	939
BstX2I	RGATCY	1 cut(s)	472
BstYI	RGATCY	1 cut(s)	472
BsuRI	GGCC	1 cut(s)	193
BtsCI	GGATG	2 cut(s)	90, 356
BtsI	GCAGTG	2 cut(s)	843, 903
BtsIMutI	CAGTG	4 cut(s)	428, 843, 903, 951
Cac8I	GCNNGC	3 cut(s)	55, 374, 753
CaiI	CAGNNNCTG	3 cut(s)	335, 383, 842
CfoI	GCGC	1 cut(s)	46
Cfr10I	RCCGGY	3 cut(s)	53, 688, 751
Cfr13I	GGNCC	2 cut(s)	191, 691
CseI	GACGC	2 cut(s)	46, 342
Csp6I	GTAC	2 cut(s)	433, 668
CspAI	ACCGGT	1 cut(s)	688
CviAII	CATG	1 cut(s)	184
CviQI	GTAC	2 cut(s)	433, 668
DdeI	CTNAG	1 cut(s)	943
DpnI	GATC	2 cut(s)	144, 474
DpnII	GATC	2 cut(s)	142, 472
Eam1104I	CTCTTC	4 cut(s)	33, 312, 655, 957
EarI	CTCTTC	4 cut(s)	33, 312, 655, 957
EciI	GGCGGA	1 cut(s)	175
Ecl136II	GAGCTC	1 cut(s)	576
Eco24I	GRGCYC	1 cut(s)	578
Eco47I	GGWCC	1 cut(s)	691
Eco53kI	GAGCTC	1 cut(s)	576
Eco57I	CTGAAG	1 cut(s)	432
Eco88I	CYCGRG	1 cut(s)	104
EcoICRI	GAGCTC	1 cut(s)	576
EcoO109I	RGGNCCY	1 cut(s)	191
EcoT22I	ATGCAT	1 cut(s)	442
EcoT38I	GRGCYC	1 cut(s)	578
FaeI	CATG	1 cut(s)	187
FaiI	YATR	3 cut(s)	167, 185, 816
FalI	AAGNNNNNCTT	4 cut(s)	594, 626, 954, 986
FaqI	GGGAC	1 cut(s)	677
FatI	CATG	1 cut(s)	183
FokI	GGATG	2 cut(s)	77, 343
FriOI	GRGCYC	1 cut(s)	578
FspBI	CTAG	1 cut(s)	195
GlaI	GCGC	1 cut(s)	45
GsuI	CTGGAG	1 cut(s)	935
HaeII	RGCGCY	1 cut(s)	47
HaeIII	GGCC	1 cut(s)	193
HapII	CCGG	4 cut(s)	54, 75, 689, 752
HgaI	GACGC	2 cut(s)	46, 342
HhaI	GCGC	1 cut(s)	46
Hin1I	GRCGYC	2 cut(s)	26, 57
Hin1II	CATG	1 cut(s)	187
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HinfI	GANTC	3 cut(s)	389, 647, 905
HpaII	CCGG	4 cut(s)	54, 75, 689, 752
HphI	GGTGA	1 cut(s)	1001
Hpy188I	TCNGA	5 cut(s)	12, 31, 50, 62, 910
Hpy188III	TCNNGA	2 cut(s)	94, 634
Hpy99I	CGWCG	1 cut(s)	31
HpyAV	CCTTC	4 cut(s)	79, 127, 558, 582
HpyCH4III	ACNGT	2 cut(s)	432, 823
HpyCH4IV	ACGT	4 cut(s)	26, 289, 316, 343
HpyCH4V	TGCA	5 cut(s)	440, 599, 790, 890, 985
HpyF10VI	GCNNNNNNNGC	5 cut(s)	50, 422, 839, 842, 893
HpyF3I	CTNAG	1 cut(s)	943
HpySE526I	ACGT	4 cut(s)	26, 289, 316, 343
Hsp92I	GRCGYC	2 cut(s)	26, 57
Hsp92II	CATG	1 cut(s)	187
HspAI	GCGC	1 cut(s)	44
KroI	GCCGGC	2 cut(s)	53, 751
KroNI	GCCGGC	2 cut(s)	55, 753
Kzo9I	GATC	2 cut(s)	142, 472
LguI	GCTCTTC	1 cut(s)	312
LmnI	GCTCC	7 cut(s)	51, 137, 337, 430, 733, 760, 954
Lsp1109I	GCAGC	7 cut(s)	259, 262, 314, 362, 829, 832, 874
MaeI	CTAG	1 cut(s)	195
MaeII	ACGT	4 cut(s)	26, 289, 316, 343
MaeIII	GTNAC	1 cut(s)	235
MalI	GATC	2 cut(s)	144, 474
MboI	GATC	2 cut(s)	142, 472
MboII	GAAGA	7 cut(s)	47, 50, 299, 642, 944, 974, 989
MfeI	CAATTG	1 cut(s)	785
MflI	RGATCY	1 cut(s)	472
MhlI	GDGCHC	3 cut(s)	552, 578, 951
MluCI	AATT	3 cut(s)	556, 625, 785
MlyI	GAGTC	2 cut(s)	641, 914
MmeI	TCCRAC	4 cut(s)	9, 419, 799, 888
MnlI	CCTC	9 cut(s)	25, 34, 131, 136, 182, 340, 538, 820, 906
Mph1103I	ATGCAT	1 cut(s)	442
MroNI	GCCGGC	2 cut(s)	53, 751
MroXI	GAANNNNTTC	3 cut(s)	618, 966, 996
MseI	TTAA	3 cut(s)	285, 584, 972
MspA1I	CMGCKG	1 cut(s)	725
MspCI	CTTAAG	1 cut(s)	971
MspI	CCGG	4 cut(s)	54, 75, 689, 752
MunI	CAATTG	1 cut(s)	785
MwoI	GCNNNNNNNGC	5 cut(s)	50, 422, 839, 842, 893
NaeI	GCCGGC	2 cut(s)	55, 753
NdeII	GATC	2 cut(s)	142, 472
NgoMIV	GCCGGC	2 cut(s)	53, 751
NlaIII	CATG	1 cut(s)	187
NlaIV	GGNNCC	5 cut(s)	73, 549, 693, 729, 756
NsiI	ATGCAT	1 cut(s)	442
PciSI	GCTCTTC	1 cut(s)	312
PdiI	GCCGGC	2 cut(s)	55, 753
PdmI	GAANNNNTTC	3 cut(s)	618, 966, 996
PfeI	GAWTC	1 cut(s)	389
PinAI	ACCGGT	1 cut(s)	688
PleI	GAGTC	2 cut(s)	641, 913
PpsI	GAGTC	2 cut(s)	641, 913
Psp124BI	GAGCTC	1 cut(s)	578
PspN4I	GGNNCC	5 cut(s)	73, 549, 693, 729, 756
PspPI	GGNCC	2 cut(s)	191, 691
PstI	CTGCAG	1 cut(s)	892
PstNI	CAGNNNCTG	3 cut(s)	335, 383, 842
PsuI	RGATCY	1 cut(s)	472
RsaI	GTAC	2 cut(s)	434, 669
RsaNI	GTAC	2 cut(s)	433, 668
SacI	GAGCTC	1 cut(s)	578
SapI	GCTCTTC	1 cut(s)	312
SaqAI	TTAA	3 cut(s)	285, 584, 972
Sau3AI	GATC	2 cut(s)	142, 472
Sau96I	GGNCC	2 cut(s)	191, 691
SchI	GAGTC	2 cut(s)	641, 914
SduI	GDGCHC	3 cut(s)	552, 578, 951
SfcI	CTRYAG	1 cut(s)	888
SinI	GGWCC	1 cut(s)	691
SmlI	CTYRAG	3 cut(s)	146, 577, 971
SmoI	CTYRAG	3 cut(s)	146, 577, 971
Sse9I	AATT	3 cut(s)	556, 625, 785
SsiI	CCGC	7 cut(s)	160, 180, 654, 674, 725, 749, 833
SspI	AATATT	1 cut(s)	139
SspMI	CTAG	1 cut(s)	195
SstI	GAGCTC	1 cut(s)	578
TaaI	ACNGT	2 cut(s)	432, 823
TaiI	ACGT	4 cut(s)	29, 292, 319, 346
TasI	AATT	3 cut(s)	556, 625, 785
TatI	WGTACW	1 cut(s)	432
TauI	GCSGC	3 cut(s)	183, 728, 836
TfiI	GAWTC	1 cut(s)	389
Tru1I	TTAA	3 cut(s)	285, 584, 972
Tru9I	TTAA	3 cut(s)	285, 584, 972
TscAI	CASTG	4 cut(s)	435, 843, 903, 951
TseI	GCWGC	7 cut(s)	272, 275, 302, 350, 842, 845, 887
TspDTI	ATGAA	2 cut(s)	653, 831
TspRI	CASTG	4 cut(s)	435, 843, 903, 951
Vha464I	CTTAAG	1 cut(s)	971
VpaK11BI	GGWCC	1 cut(s)	691
XapI	RAATTY	1 cut(s)	556
XmnI	GAANNNNTTC	3 cut(s)	618, 966, 996
XspI	CTAG	1 cut(s)	195
ZraI	GACGTC	1 cut(s)	27
Zsp2I	ATGCAT	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.