Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003027.1

Orthogroup ID

OG0002087

Physical Location & Seq

Genomic Coordinates Forward (+)

63484 .. 68321

Gene Structure 4838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003027.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

atgagcacgaagctcttagaggaacctaataaggagaagggtgcttctgggtctaggtcaaagtcttcttcttgggatatggctgattctgagttgcaaaggaagaagaaaaagttcataaataggagtagagcaaaaccagtcgcggcagtcttcgataccgaaatttcaaacacagagccggagccacaaaagatgggaaatccgaagcaaaaatggacgtcggaggaagaagaggcgctccgagccggcgtcagaaagcacggcaccggaaagtggaaggatatccagaaagaccccgagttcaaccccttcctctcctctcgctccaatattgatctcaaggacaaatggcggaatatgtctgttagtggtgtggggggtcccagagaaaaagcaaggatgagaccaagagatagtcctgttactctattctccaccccacagccttctgctgctgctcctgttaaacgtgacccagctgcagctcttctcaaacgtgagtcatcagcagctcctgtcaaacgcgaggcagcagcatctcttgtcaaaggcgagccagtagcagatgattccccaacagaagcaaaaactgaagcaaaaacagctccaatgtacaatgcaatgatttttgaagcactctctaactcaacagatccaaatggattggagactggtgctattgctaattttattgagcaaaggtatgttttggagaaaaagaatgaggtgccccaaaattttagaaggttattgagctcaaggttaagaaggctggttgcacaagaaaaacttgaaaagtttcaaaattgcttcaagataaaaagtgactcgtcaggtgagacaaaagcaccactgcccccaaaacagaatgatgcaccactggccccaaacgccccaaaacagaacgacacaccagcggccccaaaacagaatgatgtccaacttacgcaattgcagagtcatgctgatgtaatcccctatgaaacagttgaggaagcggcagtggctgctgcctacaagattgccgaagcagaaaacaaatcatttgtggctgcagaagcagtgaaagagtcggagagggtttcacagatgttcgaagacacaaactcagtgctccagttggcagaagagtttcttaagaaatgttcgcaaggtgaagttcttctggttgtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0003697 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0031974 GO:0031981 GO:0042162 GO:0042802 GO:0042803 GO:0043047 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0046983 GO:0070013 GO:0097159 GO:0098847 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

392

Amino Acids

43.29

Weight (kDa)

9.0

Isoelectric Point (pI)

59.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17520 AT1G17520 AT1G17520 AT1G17520 AT1G72740 AT1G72740
fragaria_vesca	FvH4_1g07940 FvH4_1g07940 FvH4_6g34130
malus_domestica	MD02G1083400.v1.1 MD09G1188600.v1.1 MD15G1211100.v1.1
prunus_persica	Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.7G205700_v2.0.a1 Prupe.7G205700_v2.0.a1 Prupe.7G205700_v2.0.a1
pyrus_communis	pycom02g06590 pycom09g10570 pycom15g18710
rosa_chinensis	RchiOBHm_Chr2g0093821 RchiOBHm_Chr2g0144441
rosa_laevigata	RLG00000016439 RLG00000020081
rosa_multiflora	Rmu_co8254463.1_g000001 Rmu_sc0002126.1_g000001 Rmu_sc0003027.1_g000017 Rmu_sc0017523.1_g000002
rosa_roxburghii	Rroxscaffold_2G00101310 Rroxscaffold_2G00147780
rosa_rugosa	Rorug02G0040100 Rorug02G0386600
rosa_samantha	Rh2AG086500 Rh2AG438900 Rh2BG087000 Rh2BG449200 Rh2CG089400 Rh2CG425900 Rh2DG085000 Rh2DG458900
rosa_wichuraiana	Rw2G035910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	224
AccB1I	GGYRCC	2 cut(s)	266, 730
AccII	CGCG	2 cut(s)	146, 528
AciI	CCGC	4 cut(s)	146, 355, 920, 1001
AclWI	GGATC	1 cut(s)	650
AcsI	RAATTY	2 cut(s)	165, 739
AcuI	CTGAAG	1 cut(s)	615
AcyI	GRCGYC	2 cut(s)	221, 252
AfaI	GTAC	1 cut(s)	617
AfiI	CCNNNNNNNGG	1 cut(s)	276
AflII	CTTAAG	1 cut(s)	1139
AgsI	TTSAA	6 cut(s)	171, 307, 635, 797, 806, 817
AluBI	AGCT	6 cut(s)	13, 482, 488, 515, 608, 759
AluI	AGCT	6 cut(s)	13, 482, 488, 515, 608, 759
Alw21I	GWGCWC	3 cut(s)	8, 761, 1119
Alw26I	GTCTC	3 cut(s)	400, 665, 836
AlwI	GGATC	1 cut(s)	650
AlwNI	CAGNNNCTG	2 cut(s)	518, 1010
Ama87I	CYCGRG	1 cut(s)	299
AoxI	GGCC	2 cut(s)	885, 921
ApoI	RAATTY	2 cut(s)	165, 739
Asp700I	GAANNNNTTC	4 cut(s)	113, 801, 1134, 1164
AspLEI	GCGC	1 cut(s)	241
AspS9I	GGNCC	3 cut(s)	383, 886, 922
AsuHPI	GGTGA	2 cut(s)	851, 1169
AsuII	TTCGAA	1 cut(s)	1098
AvaI	CYCGRG	1 cut(s)	299
AvaII	GGWCC	1 cut(s)	383
BaeGI	GKGCMC	1 cut(s)	735
BanI	GGYRCC	2 cut(s)	266, 730
BanII	GRGCYC	1 cut(s)	761
BbsI	GAAGAC	3 cut(s)	57, 145, 1107
Bbv12I	GWGCWC	3 cut(s)	8, 761, 1119
BccI	CCATC	1 cut(s)	190
BceAI	ACGGC	1 cut(s)	280
BcoDI	GTCTC	3 cut(s)	400, 665, 836
BfaI	CTAG	1 cut(s)	54
BfmI	CTRYAG	2 cut(s)	483, 1056
BfoI	RGCGCY	1 cut(s)	242
BfrI	CTTAAG	1 cut(s)	1139
Bme18I	GGWCC	1 cut(s)	383
BmeT110I	CYCGRG	1 cut(s)	299
BmgT120I	GGNCC	3 cut(s)	383, 886, 922
BmiI	GGNNCC	8 cut(s)	24, 186, 268, 384, 385, 732, 888, 924
BmsI	GCATC	2 cut(s)	548, 865
BpiI	GAAGAC	3 cut(s)	57, 145, 1107
BpmI	CTGGAG	1 cut(s)	1103
Bpu14I	TTCGAA	1 cut(s)	1098
BpuEI	CTTGAG	2 cut(s)	326, 745
BsaHI	GRCGYC	2 cut(s)	221, 252
BsaI	GGTCTC	1 cut(s)	400
BsaWI	WCCGGW	1 cut(s)	269
Bsc4I	CCNNNNNNNGG	1 cut(s)	276
Bse118I	RCCGGY	1 cut(s)	248
Bse1I	ACTGG	5 cut(s)	140, 560, 679, 888, 1120
Bse3DI	GCAATG	1 cut(s)	630
BseGI	GGATG	1 cut(s)	408
BseLI	CCNNNNNNNGG	1 cut(s)	276
BseMI	GCAATG	1 cut(s)	630
BseMII	CTCAG	2 cut(s)	81, 1125
BseNI	ACTGG	5 cut(s)	140, 560, 679, 888, 1120
BseRI	GAGGAG	1 cut(s)	310
BseSI	GKGCMC	1 cut(s)	735
BseYI	CCCAGC	1 cut(s)	478
Bsh1236I	CGCG	2 cut(s)	146, 528
BshFI	GGCC	2 cut(s)	887, 923
BshNI	GGYRCC	2 cut(s)	266, 730
BsiHKAI	GWGCWC	3 cut(s)	8, 761, 1119
BsiHKCI	CYCGRG	1 cut(s)	299
BsiSI	CCGG	3 cut(s)	182, 249, 270
BslFI	GGGAC	1 cut(s)	369
BslI	CCNNNNNNNGG	1 cut(s)	276
BsmAI	GTCTC	3 cut(s)	400, 665, 836
BsmFI	GGGAC	1 cut(s)	369
BsnI	GGCC	2 cut(s)	887, 923
Bso31I	GGTCTC	1 cut(s)	400
BsoBI	CYCGRG	1 cut(s)	299
Bsp119I	TTCGAA	1 cut(s)	1098
Bsp1286I	GDGCHC	4 cut(s)	8, 735, 761, 1119
Bsp1407I	TGTACA	1 cut(s)	615
Bsp143I	GATC	2 cut(s)	337, 655
BspACI	CCGC	4 cut(s)	146, 355, 920, 1001
BspANI	GGCC	2 cut(s)	887, 923
BspCNI	CTCAG	2 cut(s)	82, 1124
BspFNI	CGCG	2 cut(s)	146, 528
BspLI	GGNNCC	8 cut(s)	24, 186, 268, 384, 385, 732, 888, 924
BspMAI	CTGCAG	2 cut(s)	487, 1060
BspPI	GGATC	1 cut(s)	650
BspQI	GCTCTTC	1 cut(s)	495
BspT104I	TTCGAA	1 cut(s)	1098
BspT107I	GGYRCC	2 cut(s)	266, 730
BspTI	CTTAAG	1 cut(s)	1139
BspTNI	GGTCTC	1 cut(s)	400
BsrDI	GCAATG	1 cut(s)	630
BsrFI	RCCGGY	1 cut(s)	248
BsrGI	TGTACA	1 cut(s)	615
BsrI	ACTGG	5 cut(s)	140, 560, 679, 888, 1120
BssAI	RCCGGY	1 cut(s)	248
BssMI	GATC	2 cut(s)	337, 655
BssNI	GRCGYC	2 cut(s)	221, 252
Bst4CI	ACNGT	1 cut(s)	991
Bst6I	CTCTTC	3 cut(s)	228, 495, 1125
BstACI	GRCGYC	2 cut(s)	221, 252
BstAFI	CTTAAG	1 cut(s)	1139
BstAPI	GCANNNNNTGC	1 cut(s)	1010
BstAUI	TGTACA	1 cut(s)	615
BstBI	TTCGAA	1 cut(s)	1098
BstC8I	GCNNGC	2 cut(s)	250, 557
BstDEI	CTNAG	3 cut(s)	16, 90, 1111
BstF5I	GGATG	1 cut(s)	408
BstFNI	CGCG	2 cut(s)	146, 528
BstH2I	RGCGCY	1 cut(s)	242
BstHHI	GCGC	1 cut(s)	241
BstKTI	GATC	2 cut(s)	340, 658
BstMAI	GTCTC	3 cut(s)	400, 665, 836
BstMBI	GATC	2 cut(s)	337, 655
BstMWI	GCNNNNNNNGC	7 cut(s)	245, 605, 884, 893, 1007, 1010, 1061
BstSFI	CTRYAG	2 cut(s)	483, 1056
BstSLI	GKGCMC	1 cut(s)	735
BstUI	CGCG	2 cut(s)	146, 528
BstV2I	GAAGAC	3 cut(s)	57, 145, 1107
BstX2I	RGATCY	1 cut(s)	655
BstYI	RGATCY	1 cut(s)	655
BsuRI	GGCC	2 cut(s)	887, 923
BtsCI	GGATG	1 cut(s)	408
BtsI	GCAGTG	3 cut(s)	854, 1011, 1071
BtsIMutI	CAGTG	5 cut(s)	854, 881, 1011, 1071, 1119
Cac8I	GCNNGC	2 cut(s)	250, 557
CaiI	CAGNNNCTG	2 cut(s)	518, 1010
CfoI	GCGC	1 cut(s)	241
Cfr10I	RCCGGY	1 cut(s)	248
Cfr13I	GGNCC	3 cut(s)	383, 886, 922
CseI	GACGC	1 cut(s)	241
Csp6I	GTAC	1 cut(s)	616
CviAII	CATG	1 cut(s)	965
CviQI	GTAC	1 cut(s)	616
DdeI	CTNAG	3 cut(s)	16, 90, 1111
DpnI	GATC	2 cut(s)	339, 657
DpnII	GATC	2 cut(s)	337, 655
Eam1104I	CTCTTC	3 cut(s)	228, 495, 1125
EarI	CTCTTC	3 cut(s)	228, 495, 1125
EciI	GGCGGA	1 cut(s)	370
Ecl136II	GAGCTC	1 cut(s)	759
Eco24I	GRGCYC	1 cut(s)	761
Eco31I	GGTCTC	1 cut(s)	400
Eco32I	GATATC	1 cut(s)	286
Eco47I	GGWCC	1 cut(s)	383
Eco53kI	GAGCTC	1 cut(s)	759
Eco57I	CTGAAG	1 cut(s)	615
Eco88I	CYCGRG	1 cut(s)	299
EcoICRI	GAGCTC	1 cut(s)	759
EcoO109I	RGGNCCY	1 cut(s)	383
EcoRV	GATATC	1 cut(s)	286
EcoT38I	GRGCYC	1 cut(s)	761
FaeI	CATG	1 cut(s)	968
FaiI	YATR	6 cut(s)	80, 119, 362, 708, 966, 984
FalI	AAGNNNNNCTT	4 cut(s)	777, 809, 1122, 1154
FaqI	GGGAC	1 cut(s)	369
FatI	CATG	1 cut(s)	964
FokI	GGATG	1 cut(s)	415
FriOI	GRGCYC	1 cut(s)	761
FspBI	CTAG	1 cut(s)	54
GlaI	GCGC	1 cut(s)	240
GsaI	CCCAGC	1 cut(s)	482
GsuI	CTGGAG	1 cut(s)	1103
HaeII	RGCGCY	1 cut(s)	242
HaeIII	GGCC	2 cut(s)	887, 923
HapII	CCGG	3 cut(s)	182, 249, 270
HgaI	GACGC	1 cut(s)	241
HhaI	GCGC	1 cut(s)	241
Hin1I	GRCGYC	2 cut(s)	221, 252
Hin1II	CATG	1 cut(s)	968
Hin6I	GCGC	1 cut(s)	239
HinP1I	GCGC	1 cut(s)	239
HinfI	GANTC	6 cut(s)	86, 503, 572, 830, 961, 1073
HpaII	CCGG	3 cut(s)	182, 249, 270
HphI	GGTGA	2 cut(s)	851, 1169
Hpy188I	TCNGA	6 cut(s)	91, 207, 226, 245, 257, 1078
Hpy188III	TCNNGA	2 cut(s)	289, 817
Hpy99I	CGWCG	1 cut(s)	226
HpyAV	CCTTC	6 cut(s)	31, 274, 322, 459, 741, 765
HpyCH4III	ACNGT	1 cut(s)	991
HpyCH4IV	ACGT	3 cut(s)	221, 472, 499
HpyCH4V	TGCA	7 cut(s)	97, 485, 623, 782, 878, 958, 1058
HpyF10VI	GCNNNNNNNGC	7 cut(s)	245, 605, 884, 893, 1007, 1010, 1061
HpyF3I	CTNAG	3 cut(s)	16, 90, 1111
HpySE526I	ACGT	3 cut(s)	221, 472, 499
Hsp92I	GRCGYC	2 cut(s)	221, 252
Hsp92II	CATG	1 cut(s)	968
HspAI	GCGC	1 cut(s)	239
KflI	GGGWCCC	1 cut(s)	383
KroI	GCCGGC	1 cut(s)	248
KroNI	GCCGGC	1 cut(s)	250
Kzo9I	GATC	2 cut(s)	337, 655
LguI	GCTCTTC	1 cut(s)	495
LmnI	GCTCC	7 cut(s)	184, 246, 332, 466, 520, 613, 1122
LweI	GCATC	2 cut(s)	548, 865
MaeI	CTAG	1 cut(s)	54
MaeII	ACGT	3 cut(s)	221, 472, 499
MaeIII	GTNAC	3 cut(s)	424, 473, 827
MalI	GATC	2 cut(s)	339, 657
MboI	GATC	2 cut(s)	337, 655
MfeI	CAATTG	1 cut(s)	953
MflI	RGATCY	1 cut(s)	655
MhlI	GDGCHC	4 cut(s)	8, 735, 761, 1119
MluCI	AATT	5 cut(s)	165, 688, 739, 808, 953
MlyI	GAGTC	4 cut(s)	512, 824, 970, 1082
MmeI	TCCRAC	3 cut(s)	204, 967, 1056
MnlI	CCTC	9 cut(s)	13, 220, 229, 326, 331, 523, 721, 988, 1074
MroNI	GCCGGC	1 cut(s)	248
MroXI	GAANNNNTTC	4 cut(s)	113, 801, 1134, 1164
MseI	TTAA	3 cut(s)	468, 767, 1140
MslI	CAYNNNNRTG	1 cut(s)	969
MspA1I	CMGCKG	2 cut(s)	482, 920
MspCI	CTTAAG	1 cut(s)	1139
MspI	CCGG	3 cut(s)	182, 249, 270
MunI	CAATTG	1 cut(s)	953
MvnI	CGCG	2 cut(s)	146, 528
MwoI	GCNNNNNNNGC	7 cut(s)	245, 605, 884, 893, 1007, 1010, 1061
NaeI	GCCGGC	1 cut(s)	250
NdeII	GATC	2 cut(s)	337, 655
NgoMIV	GCCGGC	1 cut(s)	248
NlaIII	CATG	1 cut(s)	968
NlaIV	GGNNCC	8 cut(s)	24, 186, 268, 384, 385, 732, 888, 924
NmuCI	GTSAC	2 cut(s)	473, 827
NspV	TTCGAA	1 cut(s)	1098
PciSI	GCTCTTC	1 cut(s)	495
PdiI	GCCGGC	1 cut(s)	250
PdmI	GAANNNNTTC	4 cut(s)	113, 801, 1134, 1164
PfeI	GAWTC	2 cut(s)	86, 572
PleI	GAGTC	4 cut(s)	511, 824, 969, 1081
PpsI	GAGTC	4 cut(s)	511, 824, 969, 1081
PpuMI	RGGWCCY	1 cut(s)	383
Psp124BI	GAGCTC	1 cut(s)	761
Psp5II	RGGWCCY	1 cut(s)	383
PspFI	CCCAGC	1 cut(s)	478
PspN4I	GGNNCC	8 cut(s)	24, 186, 268, 384, 385, 732, 888, 924
PspPI	GGNCC	3 cut(s)	383, 886, 922
PspPPI	RGGWCCY	1 cut(s)	383
PstI	CTGCAG	2 cut(s)	487, 1060
PstNI	CAGNNNCTG	2 cut(s)	518, 1010
PsuI	RGATCY	1 cut(s)	655
PvuII	CAGCTG	1 cut(s)	482
RsaI	GTAC	1 cut(s)	617
RsaNI	GTAC	1 cut(s)	616
RseI	CAYNNNNRTG	1 cut(s)	969
SacI	GAGCTC	1 cut(s)	761
SapI	GCTCTTC	1 cut(s)	495
SaqAI	TTAA	3 cut(s)	468, 767, 1140
Sau3AI	GATC	2 cut(s)	337, 655
Sau96I	GGNCC	3 cut(s)	383, 886, 922
SchI	GAGTC	4 cut(s)	512, 824, 970, 1082
SduI	GDGCHC	4 cut(s)	8, 735, 761, 1119
SfaNI	GCATC	2 cut(s)	548, 865
SfcI	CTRYAG	2 cut(s)	483, 1056
SfuI	TTCGAA	1 cut(s)	1098
SinI	GGWCC	1 cut(s)	383
SmiMI	CAYNNNNRTG	1 cut(s)	969
SmlI	CTYRAG	3 cut(s)	341, 760, 1139
SmoI	CTYRAG	3 cut(s)	341, 760, 1139
Sse9I	AATT	5 cut(s)	165, 688, 739, 808, 953
SsiI	CCGC	4 cut(s)	146, 355, 920, 1001
SspI	AATATT	1 cut(s)	334
SspMI	CTAG	1 cut(s)	54
SstI	GAGCTC	1 cut(s)	761
TaaI	ACNGT	1 cut(s)	991
TaiI	ACGT	3 cut(s)	224, 475, 502
TaqI	TCGA	2 cut(s)	156, 1098
TasI	AATT	5 cut(s)	165, 688, 739, 808, 953
TatI	WGTACW	1 cut(s)	615
TauI	GCSGC	3 cut(s)	149, 923, 1004
TfiI	GAWTC	2 cut(s)	86, 572
Tru1I	TTAA	3 cut(s)	468, 767, 1140
Tru9I	TTAA	3 cut(s)	468, 767, 1140
TscAI	CASTG	5 cut(s)	861, 888, 1011, 1071, 1119
TseFI	GTSAC	2 cut(s)	473, 827
Tsp45I	GTSAC	2 cut(s)	473, 827
TspDTI	ATGAA	2 cut(s)	106, 999
TspRI	CASTG	5 cut(s)	861, 888, 1011, 1071, 1119
Vha464I	CTTAAG	1 cut(s)	1139
VpaK11BI	GGWCC	1 cut(s)	383
XapI	RAATTY	2 cut(s)	165, 739
XmnI	GAANNNNTTC	4 cut(s)	113, 801, 1134, 1164
XspI	CTAG	1 cut(s)	54
ZraI	GACGTC	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.