Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002087

Physical Location & Seq

Genomic Coordinates Reverse (-)

27380260 .. 27382924

Gene Structure 2665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G72740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGGAAACCAGAAACTAAAGTGGACGGCGGAGGAAGAGGAGGCGTTACTCGCCGGAATCAGAAAGCACGGTCCTGGAAAGTGGAAGAATATTCTCCGGGATCCAGAATTCGCTGATCAGCTCATCCATCGCTCCAACATTGACCTAAAGGATAAGTGGCGTAACTTGAGTGTTCCCCCTGGTACTCAAAGTTTAACTAATAAGGCACGGCCAGCAAAAGTCAAAGAGGAAGGCGACACTCCGGCTGCAGATGCAAATGATGCTGTCACTATTCCACGGCCTATTCCTACTATTCCACCTCCTCCCGGTCGGCGTACTTTACCTTCTGAGTTGATCCCTGATGAAAATACAAAGAATGCTCCTAGGTATGACGGGGTGATATTTGAAGCTCTCTCTGCTTTAGCCGATGGTAATGGATCTGATGTCAGTTCCATTTATCATTTCATTGAGCCCAGGCATGAAGTACCGCCAAATTTTAGAAGAATCCTTAGTACAAGACTGAGGAGGCTTGCAGCTCAGAGCAAACTTGAAAAGGTTAGCACCTTCAAATCTATACAGAACTTCTATAAGATACCCGATCCATCAGGAACAAAAATAGGTGTCCCAAAACCAAAGGAGACACATACGAAGCTGCGCCAAGCAAACAATCAGACCTCTGCTGATTCACAACAGATGATCGAGGAAGCTGCAATAACCGCAGCCTGTAAAGTCGTAGAGGCGGAGAATAAAATAGACGTTGCCAAACTAGCAGCAGAAGAGTTTGAGAAGATGACAAAGATTGCAGAAGAAAATAGAAAACTCCTGGTCATAGCTACTGAGATGCATGAACTATGTTCCTGTGGGGAGACTATGCTCTTGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000784 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0034641 GO:0042162 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0046677 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098687 GO:0140110 GO:1901360 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

287

Amino Acids

31.88

Weight (kDa)

8.31

Isoelectric Point (pI)

50.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	5 - 55	3e-08	Myb-like DNA-binding domain
HTH_CHD1_Hrp3	PF23588	6 - 37	6.8e-06	ATP-dependent helicase CHD1-2/hrp3 HTH domain
Myb_DNA-bind_6	PF13921	8 - 56	1e-06	Myb-like DNA-binding domain
Linker_histone	PF00538	121 - 180	7.6e-07	linker histone H1 and H5 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17520 AT1G17520 AT1G17520 AT1G17520 AT1G72740 AT1G72740
fragaria_vesca	FvH4_1g07940 FvH4_1g07940 FvH4_6g34130
malus_domestica	MD02G1083400.v1.1 MD09G1188600.v1.1 MD15G1211100.v1.1
prunus_persica	Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.7G205700_v2.0.a1 Prupe.7G205700_v2.0.a1 Prupe.7G205700_v2.0.a1
pyrus_communis	pycom02g06590 pycom09g10570 pycom15g18710
rosa_chinensis	RchiOBHm_Chr2g0093821 RchiOBHm_Chr2g0144441
rosa_laevigata	RLG00000016439 RLG00000020081
rosa_multiflora	Rmu_co8254463.1_g000001 Rmu_sc0002126.1_g000001 Rmu_sc0003027.1_g000017 Rmu_sc0017523.1_g000002
rosa_roxburghii	Rroxscaffold_2G00101310 Rroxscaffold_2G00147780
rosa_rugosa	Rorug02G0040100 Rorug02G0386600
rosa_samantha	Rh2AG086500 Rh2AG438900 Rh2BG087000 Rh2BG449200 Rh2CG089400 Rh2CG425900 Rh2DG085000 Rh2DG458900
rosa_wichuraiana	Rw2G035910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	29, 467, 696, 719
AclWI	GGATC	5 cut(s)	95, 108, 328, 424, 572
AcoI	YGGCCR	1 cut(s)	209
AcsI	RAATTY	2 cut(s)	107, 472
AfaI	GTAC	4 cut(s)	184, 316, 465, 493
AfiI	CCNNNNNNNGG	1 cut(s)	305
AgsI	TTSAA	3 cut(s)	386, 530, 547
AjnI	CCWGG	4 cut(s)	73, 178, 452, 801
AluBI	AGCT	6 cut(s)	121, 389, 515, 631, 686, 812
AluI	AGCT	6 cut(s)	121, 389, 515, 631, 686, 812
Alw26I	GTCTC	2 cut(s)	611, 839
AlwI	GGATC	5 cut(s)	95, 108, 328, 424, 572
AoxI	GGCC	2 cut(s)	209, 278
ApeKI	GCWGC	6 cut(s)	245, 512, 631, 686, 698, 749
ApoI	RAATTY	2 cut(s)	107, 472
AspA2I	CCTAGG	1 cut(s)	362
AspLEI	GCGC	1 cut(s)	636
AspS9I	GGNCC	1 cut(s)	71
AsuC2I	CCSGG	2 cut(s)	98, 306
AsuHPI	GGTGA	1 cut(s)	388
AvaII	GGWCC	1 cut(s)	71
AvrII	CCTAGG	1 cut(s)	362
BamHI	GGATCC	1 cut(s)	100
BanII	GRGCYC	1 cut(s)	453
BarI	GAAGNNNNNNTAC	2 cut(s)	307, 339
BbvI	GCAGC	6 cut(s)	232, 524, 618, 673, 710, 761
BccI	CCATC	3 cut(s)	135, 401, 589
BceAI	ACGGC	3 cut(s)	42, 224, 293
BcgI	CGANNNNNNTGC	2 cut(s)	668, 702
BciT130I	CCWGG	4 cut(s)	75, 180, 454, 803
BclI	TGATCA	1 cut(s)	115
BcnI	CCSGG	2 cut(s)	98, 306
BcoDI	GTCTC	2 cut(s)	611, 839
BfaI	CTAG	2 cut(s)	363, 746
BfmI	CTRYAG	1 cut(s)	246
BisI	GCNGC	6 cut(s)	246, 513, 632, 687, 699, 750
BlnI	CCTAGG	1 cut(s)	362
BlsI	GCNGC	6 cut(s)	247, 514, 633, 688, 700, 751
Bme1390I	CCNGG	6 cut(s)	75, 98, 180, 306, 454, 803
Bme18I	GGWCC	1 cut(s)	71
BmgT120I	GGNCC	1 cut(s)	71
BmiI	GGNNCC	1 cut(s)	102
BmrFI	CCNGG	6 cut(s)	75, 98, 180, 306, 454, 803
BmsI	GCATC	3 cut(s)	241, 250, 810
BpuEI	CTTGAG	1 cut(s)	187
BpuMI	CCSGG	2 cut(s)	98, 306
BsaJI	CCNNGG	4 cut(s)	178, 275, 362, 452
Bsc4I	CCNNNNNNNGG	1 cut(s)	305
BseBI	CCWGG	4 cut(s)	75, 180, 454, 803
BseDI	CCNNGG	4 cut(s)	178, 275, 362, 452
BseGI	GGATG	1 cut(s)	123
BseLI	CCNNNNNNNGG	1 cut(s)	305
BseMII	CTCAG	4 cut(s)	318, 491, 530, 807
BseRI	GAGGAG	3 cut(s)	53, 291, 517
BseXI	GCAGC	6 cut(s)	232, 524, 618, 673, 710, 761
Bsh1285I	CGRYCG	1 cut(s)	310
BshFI	GGCC	2 cut(s)	211, 280
BsiEI	CGRYCG	1 cut(s)	310
BsiSI	CCGG	4 cut(s)	54, 97, 242, 306
BslFI	GGGAC	1 cut(s)	587
BslI	CCNNNNNNNGG	1 cut(s)	305
BsmAI	GTCTC	2 cut(s)	611, 839
BsmFI	GGGAC	1 cut(s)	587
BsmI	GAATGC	1 cut(s)	361
BsnI	GGCC	2 cut(s)	211, 280
Bsp1286I	GDGCHC	1 cut(s)	453
Bsp143I	GATC	6 cut(s)	100, 115, 333, 416, 577, 675
BspACI	CCGC	4 cut(s)	29, 467, 696, 719
BspANI	GGCC	2 cut(s)	211, 280
BspCNI	CTCAG	4 cut(s)	319, 492, 529, 808
BspLI	GGNNCC	1 cut(s)	102
BspMAI	CTGCAG	1 cut(s)	250
BspPI	GGATC	5 cut(s)	95, 108, 328, 424, 572
BssECI	CCNNGG	4 cut(s)	178, 275, 362, 452
BssMI	GATC	6 cut(s)	100, 115, 333, 416, 577, 675
BssT1I	CCWWGG	1 cut(s)	362
Bst2UI	CCWGG	4 cut(s)	75, 180, 454, 803
Bst4CI	ACNGT	1 cut(s)	71
Bst6I	CTCTTC	2 cut(s)	30, 750
BstAPI	GCANNNNNTGC	1 cut(s)	260
BstC8I	GCNNGC	2 cut(s)	213, 510
BstDEI	CTNAG	5 cut(s)	327, 488, 500, 516, 816
BstDSI	CCRYGG	1 cut(s)	275
BstF5I	GGATG	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	636
BstKTI	GATC	6 cut(s)	103, 118, 336, 419, 580, 678
BstMAI	GTCTC	2 cut(s)	611, 839
BstMBI	GATC	6 cut(s)	100, 115, 333, 416, 577, 675
BstMCI	CGRYCG	1 cut(s)	310
BstMWI	GCNNNNNNNGC	7 cut(s)	50, 212, 251, 260, 395, 695, 746
BstNI	CCWGG	4 cut(s)	75, 180, 454, 803
BstSCI	CCNGG	6 cut(s)	73, 96, 178, 304, 452, 801
BstSFI	CTRYAG	1 cut(s)	246
BstV1I	GCAGC	6 cut(s)	232, 524, 618, 673, 710, 761
BstX2I	RGATCY	2 cut(s)	100, 416
BstYI	RGATCY	2 cut(s)	100, 416
BsuRI	GGCC	2 cut(s)	211, 280
BtgI	CCRYGG	1 cut(s)	275
BtgZI	GCGATG	1 cut(s)	113
BtsCI	GGATG	1 cut(s)	123
Cac8I	GCNNGC	2 cut(s)	213, 510
CfoI	GCGC	1 cut(s)	636
Cfr13I	GGNCC	1 cut(s)	71
Csp6I	GTAC	4 cut(s)	183, 315, 464, 492
CviAII	CATG	2 cut(s)	458, 824
CviQI	GTAC	4 cut(s)	183, 315, 464, 492
DdeI	CTNAG	5 cut(s)	327, 488, 500, 516, 816
DpnI	GATC	6 cut(s)	102, 117, 335, 418, 579, 677
DpnII	GATC	6 cut(s)	100, 115, 333, 416, 577, 675
EaeI	YGGCCR	1 cut(s)	209
Eam1104I	CTCTTC	2 cut(s)	30, 750
EarI	CTCTTC	2 cut(s)	30, 750
EciI	GGCGGA	2 cut(s)	44, 734
Eco130I	CCWWGG	1 cut(s)	362
Eco24I	GRGCYC	1 cut(s)	453
Eco47I	GGWCC	1 cut(s)	71
EcoRI	GAATTC	1 cut(s)	107
EcoRII	CCWGG	4 cut(s)	73, 178, 452, 801
EcoT14I	CCWWGG	1 cut(s)	362
EcoT22I	ATGCAT	1 cut(s)	825
EcoT38I	GRGCYC	1 cut(s)	453
ErhI	CCWWGG	1 cut(s)	362
FaeI	CATG	2 cut(s)	461, 827
FaiI	YATR	9 cut(s)	369, 459, 554, 567, 624, 809, 825, 832, 851
FaqI	GGGAC	1 cut(s)	587
FatI	CATG	2 cut(s)	457, 823
FbaI	TGATCA	1 cut(s)	115
Fnu4HI	GCNGC	6 cut(s)	246, 513, 632, 687, 699, 750
FokI	GGATG	1 cut(s)	110
FriOI	GRGCYC	1 cut(s)	453
Fsp4HI	GCNGC	6 cut(s)	246, 513, 632, 687, 699, 750
FspBI	CTAG	2 cut(s)	363, 746
GlaI	GCGC	1 cut(s)	635
GluI	GCNGC	6 cut(s)	246, 513, 632, 687, 699, 750
HaeIII	GGCC	2 cut(s)	211, 280
HapII	CCGG	4 cut(s)	54, 97, 242, 306
HhaI	GCGC	1 cut(s)	636
Hin1II	CATG	2 cut(s)	461, 827
Hin6I	GCGC	1 cut(s)	634
HinP1I	GCGC	1 cut(s)	634
HinfI	GANTC	3 cut(s)	57, 483, 662
HpaII	CCGG	4 cut(s)	54, 97, 242, 306
HphI	GGTGA	1 cut(s)	388
Hpy166II	GTNNAC	1 cut(s)	24
Hpy188I	TCNGA	5 cut(s)	62, 328, 421, 519, 651
Hpy188III	TCNNGA	2 cut(s)	104, 585
Hpy8I	GTNNAC	1 cut(s)	24
HpyAV	CCTTC	3 cut(s)	224, 333, 553
HpyCH4III	ACNGT	1 cut(s)	71
HpyCH4IV	ACGT	1 cut(s)	735
HpyCH4V	TGCA	6 cut(s)	248, 254, 512, 689, 782, 823
HpyF10VI	GCNNNNNNNGC	7 cut(s)	50, 212, 251, 260, 395, 695, 746
HpyF3I	CTNAG	5 cut(s)	327, 488, 500, 516, 816
HpySE526I	ACGT	1 cut(s)	735
Hsp92II	CATG	2 cut(s)	461, 827
HspAI	GCGC	1 cut(s)	634
Ksp22I	TGATCA	1 cut(s)	115
Kzo9I	GATC	6 cut(s)	100, 115, 333, 416, 577, 675
LmnI	GCTCC	2 cut(s)	137, 364
Lsp1109I	GCAGC	6 cut(s)	232, 524, 618, 673, 710, 761
LweI	GCATC	3 cut(s)	241, 250, 810
MaeI	CTAG	2 cut(s)	363, 746
MaeII	ACGT	1 cut(s)	735
MaeIII	GTNAC	3 cut(s)	45, 161, 265
MalI	GATC	6 cut(s)	102, 117, 335, 418, 579, 677
MboI	GATC	6 cut(s)	100, 115, 333, 416, 577, 675
MboII	GAAGA	6 cut(s)	47, 97, 492, 767, 778, 797
MflI	RGATCY	2 cut(s)	100, 416
MhlI	GDGCHC	1 cut(s)	453
MluCI	AATT	2 cut(s)	107, 472
MmeI	TCCRAC	1 cut(s)	159
Mph1103I	ATGCAT	1 cut(s)	825
MseI	TTAA	1 cut(s)	194
MspI	CCGG	4 cut(s)	54, 97, 242, 306
MspR9I	CCNGG	6 cut(s)	75, 98, 180, 306, 454, 803
Mva1269I	GAATGC	1 cut(s)	361
MvaI	CCWGG	4 cut(s)	75, 180, 454, 803
MwoI	GCNNNNNNNGC	7 cut(s)	50, 212, 251, 260, 395, 695, 746
NciI	CCSGG	2 cut(s)	98, 306
NdeII	GATC	6 cut(s)	100, 115, 333, 416, 577, 675
NlaIII	CATG	2 cut(s)	461, 827
NlaIV	GGNNCC	1 cut(s)	102
NmuCI	GTSAC	1 cut(s)	265
NsiI	ATGCAT	1 cut(s)	825
PctI	GAATGC	1 cut(s)	361
PfeI	GAWTC	3 cut(s)	57, 483, 662
PfoI	TCCNGGA	2 cut(s)	73, 96
PkrI	GCNGC	6 cut(s)	247, 514, 633, 688, 700, 751
Psp6I	CCWGG	4 cut(s)	73, 178, 452, 801
PspGI	CCWGG	4 cut(s)	73, 178, 452, 801
PspN4I	GGNNCC	1 cut(s)	102
PspPI	GGNCC	1 cut(s)	71
PstI	CTGCAG	1 cut(s)	250
PsuI	RGATCY	2 cut(s)	100, 416
RsaI	GTAC	4 cut(s)	184, 316, 465, 493
RsaNI	GTAC	4 cut(s)	183, 315, 464, 492
SaqAI	TTAA	1 cut(s)	194
SatI	GCNGC	6 cut(s)	246, 513, 632, 687, 699, 750
Sau3AI	GATC	6 cut(s)	100, 115, 333, 416, 577, 675
Sau96I	GGNCC	1 cut(s)	71
ScrFI	CCNGG	6 cut(s)	75, 98, 180, 306, 454, 803
SduI	GDGCHC	1 cut(s)	453
SfaNI	GCATC	3 cut(s)	241, 250, 810
SfcI	CTRYAG	1 cut(s)	246
SinI	GGWCC	1 cut(s)	71
SmlI	CTYRAG	1 cut(s)	166
SmoI	CTYRAG	1 cut(s)	166
Sse9I	AATT	2 cut(s)	107, 472
SsiI	CCGC	4 cut(s)	29, 467, 696, 719
SspI	AATATT	1 cut(s)	91
SspMI	CTAG	2 cut(s)	363, 746
StyD4I	CCNGG	6 cut(s)	73, 96, 178, 304, 452, 801
StyI	CCWWGG	1 cut(s)	362
TaaI	ACNGT	1 cut(s)	71
TaiI	ACGT	1 cut(s)	738
TaqI	TCGA	1 cut(s)	678
TasI	AATT	2 cut(s)	107, 472
TatI	WGTACW	1 cut(s)	491
TfiI	GAWTC	3 cut(s)	57, 483, 662
Tru1I	TTAA	1 cut(s)	194
Tru9I	TTAA	1 cut(s)	194
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	6 cut(s)	245, 512, 631, 686, 698, 749
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	4 cut(s)	357, 433, 474, 840
VpaK11BI	GGWCC	1 cut(s)	71
XapI	RAATTY	2 cut(s)	107, 472
XmaJI	CCTAGG	1 cut(s)	362
XspI	CTAG	2 cut(s)	363, 746
Zsp2I	ATGCAT	1 cut(s)	825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.