Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0002087

Physical Location & Seq

Genomic Coordinates Forward (+)

8645809 .. 8648957

Gene Structure 3149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g10570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGGAAACCAAAAGCAAAAGTGGACGGCGGCGGAGGAAGAAGCCCTACTCGCCGGAGTAGCGAAGCACGGACCTGGCAAGTGGAAGAACATCATCAAAGATCCTGAATGCGCCCCTTTCCTGATTCACCGCTCCAATATCGACCTCAAGGATAAGTGGAGGAACTTGGGTGTTAATTCTTGTGGACATGGTTCTAAGGAAAGACCAAGGGCTACAAAGATTAGAAAGGTTGTGGGTACCCAGCATGACATTGTTCAGAGCCCTGCTTCTGCTGCTTCGGTTCGACCCAATGCATCTCTCGTTGCTGTCACAAACGATGCTTTGAGTACAGCATCTGATGGGAAAAATGCTCCAAGGTATGATGCAATGATTTTTGAGGCACTTTTCACGATGAAAGATAAGGATGGATCTACTATAGGTGCCATTCTTAACTATATTGAGCAAAGGCATGAGGTGCCTGTACCAGCAAATTTCAGAAGGGTTTTGGGTACAAGGTTAAGACAGCTTGCTATGCAAGGAAAACTGGACAAGGCACAAAATGGTTACAAGATCAAAAAGGATGTAACTTTGGTAGCAGAAACACCTATATCTACTCCAGATCAAAAGGAAGTGAGGCCCCGGAAGTTGCAGAATTATGTGCCAATGATCTCTACCGAAACAGTGAAGGATGCAGCTGATAATGCTGCTTACAAACTCGTGGATGCTGATAACAAAAGCTTTCTGGCTATTCAAGCAATGAAGGAAGCAGAAAGAGTTTCAATGATGGCAGAAGATACCGACTCAATGCTACTGTTAATAGAAGAGATTTATGAACAATGTTTGCGTGGTGAAGTCGTTGCCTTGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000784 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0034641 GO:0042162 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0046677 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098687 GO:0140110 GO:1901360 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

283

Amino Acids

31.17

Weight (kDa)

8.96

Isoelectric Point (pI)

35.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	5 - 56	8.9e-08	Myb-like DNA-binding domain
Linker_histone	PF00538	118 - 179	2.4e-09	linker histone H1 and H5 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17520 AT1G17520 AT1G17520 AT1G17520 AT1G72740 AT1G72740
fragaria_vesca	FvH4_1g07940 FvH4_1g07940 FvH4_6g34130
malus_domestica	MD02G1083400.v1.1 MD09G1188600.v1.1 MD15G1211100.v1.1
prunus_persica	Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.7G205700_v2.0.a1 Prupe.7G205700_v2.0.a1 Prupe.7G205700_v2.0.a1
pyrus_communis	pycom02g06590 pycom09g10570 pycom15g18710
rosa_chinensis	RchiOBHm_Chr2g0093821 RchiOBHm_Chr2g0144441
rosa_laevigata	RLG00000016439 RLG00000020081
rosa_multiflora	Rmu_co8254463.1_g000001 Rmu_sc0002126.1_g000001 Rmu_sc0003027.1_g000017 Rmu_sc0017523.1_g000002
rosa_roxburghii	Rroxscaffold_2G00101310 Rroxscaffold_2G00147780
rosa_rugosa	Rorug02G0040100 Rorug02G0386600
rosa_samantha	Rh2AG086500 Rh2AG438900 Rh2BG087000 Rh2BG449200 Rh2CG089400 Rh2CG425900 Rh2DG085000 Rh2DG458900
rosa_wichuraiana	Rw2G035910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	236
AccB1I	GGYRCC	3 cut(s)	236, 419, 454
AccBSI	CCGCTC	1 cut(s)	132
AciI	CCGC	3 cut(s)	29, 32, 130
AclWI	GGATC	2 cut(s)	95, 415
AcsI	RAATTY	1 cut(s)	469
AfaI	GTAC	4 cut(s)	238, 328, 462, 490
AgsI	TTSAA	2 cut(s)	731, 759
AjnI	CCWGG	1 cut(s)	73
AluBI	AGCT	3 cut(s)	505, 674, 717
AluI	AGCT	3 cut(s)	505, 674, 717
AlwI	GGATC	2 cut(s)	95, 415
AlwNI	CAGNNNCTG	1 cut(s)	335
AoxI	GGCC	1 cut(s)	614
ApeKI	GCWGC	3 cut(s)	272, 671, 683
ApoI	RAATTY	1 cut(s)	469
Asp718I	GGTACC	1 cut(s)	236
AspLEI	GCGC	1 cut(s)	113
AspS9I	GGNCC	2 cut(s)	71, 615
AsuC2I	CCSGG	1 cut(s)	619
AsuHPI	GGTGA	2 cut(s)	119, 839
AvaII	GGWCC	1 cut(s)	71
BanI	GGYRCC	3 cut(s)	236, 419, 454
BanII	GRGCYC	1 cut(s)	263
BarI	GAAGNNNNNNTAC	2 cut(s)	30, 62
BauI	CACGAG	1 cut(s)	695
BbvI	GCAGC	3 cut(s)	259, 670, 683
BccI	CCATC	3 cut(s)	332, 398, 757
BceAI	ACGGC	1 cut(s)	42
BciT130I	CCWGG	1 cut(s)	75
BcnI	CCSGG	1 cut(s)	619
BfmI	CTRYAG	1 cut(s)	414
BisI	GCNGC	4 cut(s)	30, 273, 672, 684
BlsI	GCNGC	4 cut(s)	31, 274, 673, 685
Bme1390I	CCNGG	2 cut(s)	75, 619
Bme18I	GGWCC	1 cut(s)	71
BmgT120I	GGNCC	2 cut(s)	71, 615
BmiI	GGNNCC	4 cut(s)	238, 421, 456, 617
BmrFI	CCNGG	2 cut(s)	75, 619
BmsI	GCATC	6 cut(s)	302, 307, 341, 352, 658, 691
BpmI	CTGGAG	1 cut(s)	579
BpuEI	CTTGAG	1 cut(s)	131
BpuMI	CCSGG	1 cut(s)	619
BsaJI	CCNNGG	4 cut(s)	206, 353, 617, 840
Bse1I	ACTGG	1 cut(s)	528
Bse3DI	GCAATG	2 cut(s)	372, 741
BseBI	CCWGG	1 cut(s)	75
BseDI	CCNNGG	4 cut(s)	206, 353, 617, 840
BseGI	GGATG	4 cut(s)	409, 565, 673, 706
BseMI	GCAATG	2 cut(s)	372, 741
BseNI	ACTGG	1 cut(s)	528
BseXI	GCAGC	3 cut(s)	259, 670, 683
BseYI	CCCAGC	1 cut(s)	240
BshFI	GGCC	1 cut(s)	616
BshNI	GGYRCC	3 cut(s)	236, 419, 454
BsiSI	CCGG	2 cut(s)	54, 619
BsmI	GAATGC	1 cut(s)	113
BsnI	GGCC	1 cut(s)	616
Bsp1286I	GDGCHC	1 cut(s)	263
Bsp143I	GATC	5 cut(s)	100, 407, 549, 598, 645
BspACI	CCGC	3 cut(s)	29, 32, 130
BspANI	GGCC	1 cut(s)	616
BspLI	GGNNCC	4 cut(s)	238, 421, 456, 617
BspPI	GGATC	2 cut(s)	95, 415
BspT107I	GGYRCC	3 cut(s)	236, 419, 454
BsrBI	CCGCTC	1 cut(s)	132
BsrDI	GCAATG	2 cut(s)	372, 741
BsrI	ACTGG	1 cut(s)	528
BssECI	CCNNGG	4 cut(s)	206, 353, 617, 840
BssMI	GATC	5 cut(s)	100, 407, 549, 598, 645
BssSI	CACGAG	1 cut(s)	695
BssT1I	CCWWGG	3 cut(s)	206, 353, 840
Bst2BI	CACGAG	1 cut(s)	695
Bst2UI	CCWGG	1 cut(s)	75
Bst4CI	ACNGT	2 cut(s)	661, 792
Bst6I	CTCTTC	1 cut(s)	795
BstAPI	GCANNNNNTGC	1 cut(s)	454
BstC8I	GCNNGC	1 cut(s)	507
BstDEI	CTNAG	2 cut(s)	195, 846
BstF5I	GGATG	4 cut(s)	409, 565, 673, 706
BstHHI	GCGC	1 cut(s)	113
BstKTI	GATC	5 cut(s)	103, 410, 552, 601, 648
BstMBI	GATC	5 cut(s)	100, 407, 549, 598, 645
BstMWI	GCNNNNNNNGC	7 cut(s)	50, 59, 272, 454, 511, 680, 731
BstNI	CCWGG	1 cut(s)	75
BstSCI	CCNGG	2 cut(s)	73, 617
BstSFI	CTRYAG	1 cut(s)	414
BstV1I	GCAGC	3 cut(s)	259, 670, 683
BstX2I	RGATCY	2 cut(s)	100, 407
BstYI	RGATCY	2 cut(s)	100, 407
BsuRI	GGCC	1 cut(s)	616
BtsCI	GGATG	4 cut(s)	409, 565, 673, 706
BtsIMutI	CAGTG	1 cut(s)	666
Cac8I	GCNNGC	1 cut(s)	507
CaiI	CAGNNNCTG	1 cut(s)	335
CfoI	GCGC	1 cut(s)	113
Cfr13I	GGNCC	2 cut(s)	71, 615
Csp6I	GTAC	4 cut(s)	237, 327, 461, 489
CviAII	CATG	3 cut(s)	188, 245, 449
CviJI	RGCY	9 cut(s)	44, 212, 261, 505, 616, 674, 717, 725, 845
CviKI_1	RGCY	9 cut(s)	44, 212, 261, 505, 616, 674, 717, 725, 845
CviQI	GTAC	4 cut(s)	237, 327, 461, 489
DdeI	CTNAG	2 cut(s)	195, 846
DpnI	GATC	5 cut(s)	102, 409, 551, 600, 647
DpnII	GATC	5 cut(s)	100, 407, 549, 598, 645
Eam1104I	CTCTTC	1 cut(s)	795
EarI	CTCTTC	1 cut(s)	795
EciI	GGCGGA	1 cut(s)	47
Eco130I	CCWWGG	3 cut(s)	206, 353, 840
Eco24I	GRGCYC	1 cut(s)	263
Eco47I	GGWCC	1 cut(s)	71
EcoO109I	RGGNCCY	1 cut(s)	615
EcoRII	CCWGG	1 cut(s)	73
EcoT14I	CCWWGG	3 cut(s)	206, 353, 840
EcoT22I	ATGCAT	1 cut(s)	295
EcoT38I	GRGCYC	1 cut(s)	263
ErhI	CCWWGG	3 cut(s)	206, 353, 840
FaeI	CATG	3 cut(s)	191, 248, 452
FatI	CATG	3 cut(s)	187, 244, 448
Fnu4HI	GCNGC	4 cut(s)	30, 273, 672, 684
FokI	GGATG	4 cut(s)	416, 572, 680, 713
FriOI	GRGCYC	1 cut(s)	263
Fsp4HI	GCNGC	4 cut(s)	30, 273, 672, 684
GlaI	GCGC	1 cut(s)	112
GluI	GCNGC	4 cut(s)	30, 273, 672, 684
GsaI	CCCAGC	1 cut(s)	244
GsuI	CTGGAG	1 cut(s)	579
HaeIII	GGCC	1 cut(s)	616
HapII	CCGG	2 cut(s)	54, 619
HhaI	GCGC	1 cut(s)	113
Hin1II	CATG	3 cut(s)	191, 248, 452
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HindIII	AAGCTT	1 cut(s)	715
HinfI	GANTC	2 cut(s)	124, 779
HpaII	CCGG	2 cut(s)	54, 619
HphI	GGTGA	2 cut(s)	119, 839
Hpy166II	GTNNAC	2 cut(s)	24, 185
Hpy188I	TCNGA	3 cut(s)	258, 337, 476
Hpy188III	TCNNGA	4 cut(s)	104, 121, 388, 596
Hpy8I	GTNNAC	2 cut(s)	24, 185
HpyAV	CCTTC	3 cut(s)	471, 658, 733
HpyCH4III	ACNGT	2 cut(s)	661, 792
HpyCH4V	TGCA	5 cut(s)	293, 365, 514, 628, 671
HpyF10VI	GCNNNNNNNGC	7 cut(s)	50, 59, 272, 454, 511, 680, 731
HpyF3I	CTNAG	2 cut(s)	195, 846
Hsp92II	CATG	3 cut(s)	191, 248, 452
HspAI	GCGC	1 cut(s)	111
KpnI	GGTACC	1 cut(s)	240
Kzo9I	GATC	5 cut(s)	100, 407, 549, 598, 645
LmnI	GCTCC	2 cut(s)	137, 355
Lsp1109I	GCAGC	3 cut(s)	259, 670, 683
LweI	GCATC	6 cut(s)	302, 307, 341, 352, 658, 691
MaeIII	GTNAC	3 cut(s)	307, 542, 562
MalI	GATC	5 cut(s)	102, 409, 551, 600, 647
MbiI	CCGCTC	1 cut(s)	132
MboI	GATC	5 cut(s)	100, 407, 549, 598, 645
MboII	GAAGA	4 cut(s)	50, 97, 782, 812
MflI	RGATCY	2 cut(s)	100, 407
MhlI	GDGCHC	1 cut(s)	263
MluCI	AATT	3 cut(s)	175, 469, 631
MlyI	GAGTC	1 cut(s)	773
MnlI	CCTC	6 cut(s)	28, 153, 155, 370, 445, 606
Mph1103I	ATGCAT	1 cut(s)	295
MseI	TTAA	4 cut(s)	174, 429, 497, 794
MspA1I	CMGCKG	1 cut(s)	674
MspI	CCGG	2 cut(s)	54, 619
MspR9I	CCNGG	2 cut(s)	75, 619
Mva1269I	GAATGC	1 cut(s)	113
MvaI	CCWGG	1 cut(s)	75
MwoI	GCNNNNNNNGC	7 cut(s)	50, 59, 272, 454, 511, 680, 731
NciI	CCSGG	1 cut(s)	619
NdeII	GATC	5 cut(s)	100, 407, 549, 598, 645
NlaIII	CATG	3 cut(s)	191, 248, 452
NlaIV	GGNNCC	4 cut(s)	238, 421, 456, 617
NmuCI	GTSAC	1 cut(s)	307
NsiI	ATGCAT	1 cut(s)	295
PctI	GAATGC	1 cut(s)	113
PfeI	GAWTC	1 cut(s)	124
PkrI	GCNGC	4 cut(s)	31, 274, 673, 685
PleI	GAGTC	1 cut(s)	773
PpsI	GAGTC	1 cut(s)	773
Psp6I	CCWGG	1 cut(s)	73
PspFI	CCCAGC	1 cut(s)	240
PspGI	CCWGG	1 cut(s)	73
PspN4I	GGNNCC	4 cut(s)	238, 421, 456, 617
PspPI	GGNCC	2 cut(s)	71, 615
PstNI	CAGNNNCTG	1 cut(s)	335
PsuI	RGATCY	2 cut(s)	100, 407
PvuII	CAGCTG	1 cut(s)	674
RsaI	GTAC	4 cut(s)	238, 328, 462, 490
RsaNI	GTAC	4 cut(s)	237, 327, 461, 489
SaqAI	TTAA	4 cut(s)	174, 429, 497, 794
SatI	GCNGC	4 cut(s)	30, 273, 672, 684
Sau3AI	GATC	5 cut(s)	100, 407, 549, 598, 645
Sau96I	GGNCC	2 cut(s)	71, 615
SchI	GAGTC	1 cut(s)	773
ScrFI	CCNGG	2 cut(s)	75, 619
SduI	GDGCHC	1 cut(s)	263
SfaNI	GCATC	6 cut(s)	302, 307, 341, 352, 658, 691
SfcI	CTRYAG	1 cut(s)	414
SinI	GGWCC	1 cut(s)	71
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	3 cut(s)	175, 469, 631
SsiI	CCGC	3 cut(s)	29, 32, 130
StyD4I	CCNGG	2 cut(s)	73, 617
StyI	CCWWGG	3 cut(s)	206, 353, 840
TaaI	ACNGT	2 cut(s)	661, 792
TaqI	TCGA	2 cut(s)	141, 283
TasI	AATT	3 cut(s)	175, 469, 631
TatI	WGTACW	1 cut(s)	326
TauI	GCSGC	1 cut(s)	32
TfiI	GAWTC	1 cut(s)	124
Tru1I	TTAA	4 cut(s)	174, 429, 497, 794
Tru9I	TTAA	4 cut(s)	174, 429, 497, 794
TscAI	CASTG	1 cut(s)	666
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	3 cut(s)	272, 671, 683
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	3 cut(s)	407, 752, 825
TspGWI	ACGGA	1 cut(s)	84
TspRI	CASTG	1 cut(s)	666
VpaK11BI	GGWCC	1 cut(s)	71
XapI	RAATTY	1 cut(s)	469
Zsp2I	ATGCAT	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.