Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0002087

Physical Location & Seq

Genomic Coordinates Reverse (-)

4573853 .. 4575927

Gene Structure 2075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g06590.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGGAAATCCGAAGCAAAAATGGACGGTGGAGGAAGAAGAAGCTCTGAGAGCGGGGGTTAGGAAACACGGCACTGGCAAGTGGAAGGACATCCAGAAGGACCCCGAGTTCAACCCCTTTCTCTCTTCTCGCTCCAATATTGATCTCAAGGACAAATGGAGGAATATGACTGTTAGTAGCACGGGGCCTCGGGAAAAATCAAGGCCCAAAGCAAGAACAAACCCAGATGTTGCTGTTGCTTCAGTATCCGTTCCCCAGACTTCTTCTGCTGCTCCAGTCAGACGCGATTCACCAGCACAGCTCCAGTCAGACGTGATTCACCAGTGGCAGCCCCAGTCGGACGTGATTCACCAGCAGAAGCTCCAGTCAGGCGCGATGCACCAGCGGCAACTCCATTCAAACGCGAGGCATCAACAGAAACTCCAGTCAGACGCGATACAACTCCAGTTGCGGATGATTCCTCGACTGGCTTATCTGATGCAATACCTGCTCCAGTGTGCAATGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0003697 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0031974 GO:0031981 GO:0042162 GO:0042802 GO:0042803 GO:0043047 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0046983 GO:0070013 GO:0097159 GO:0098847 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

170

Amino Acids

19.33

Weight (kDa)

10.11

Isoelectric Point (pI)

67.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17520 AT1G17520 AT1G17520 AT1G17520 AT1G72740 AT1G72740
fragaria_vesca	FvH4_1g07940 FvH4_1g07940 FvH4_6g34130
malus_domestica	MD02G1083400.v1.1 MD09G1188600.v1.1 MD15G1211100.v1.1
prunus_persica	Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.7G205700_v2.0.a1 Prupe.7G205700_v2.0.a1 Prupe.7G205700_v2.0.a1
pyrus_communis	pycom02g06590 pycom09g10570 pycom15g18710
rosa_chinensis	RchiOBHm_Chr2g0093821 RchiOBHm_Chr2g0144441
rosa_laevigata	RLG00000016439 RLG00000020081
rosa_multiflora	Rmu_co8254463.1_g000001 Rmu_sc0002126.1_g000001 Rmu_sc0003027.1_g000017 Rmu_sc0017523.1_g000002
rosa_roxburghii	Rroxscaffold_2G00101310 Rroxscaffold_2G00147780
rosa_rugosa	Rorug02G0040100 Rorug02G0386600
rosa_samantha	Rh2AG086500 Rh2AG438900 Rh2BG087000 Rh2BG449200 Rh2CG089400 Rh2CG425900 Rh2DG085000 Rh2DG458900
rosa_wichuraiana	Rw2G035910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	495
AccBSI	CCGCTC	1 cut(s)	53
AccII	CGCG	4 cut(s)	285, 374, 404, 434
AciI	CCGC	3 cut(s)	53, 385, 451
AcuI	CTGAAG	1 cut(s)	225
AgsI	TTSAA	2 cut(s)	112, 399
AjiI	CACGTC	2 cut(s)	313, 343
AloI	GAACNNNNNNTCC	2 cut(s)	92, 124
AluBI	AGCT	3 cut(s)	44, 301, 361
AluI	AGCT	3 cut(s)	44, 301, 361
Ama87I	CYCGRG	2 cut(s)	104, 189
AoxI	GGCC	2 cut(s)	185, 203
ApeKI	GCWGC	2 cut(s)	269, 328
AspLEI	GCGC	1 cut(s)	374
AspS9I	GGNCC	3 cut(s)	100, 185, 204
AsuHPI	GGTGA	3 cut(s)	282, 311, 341
AvaI	CYCGRG	2 cut(s)	104, 189
AvaII	GGWCC	1 cut(s)	100
BbvI	GCAGC	2 cut(s)	256, 340
BceAI	ACGGC	1 cut(s)	85
BciVI	GTATCC	1 cut(s)	256
BfuAI	ACCTGC	1 cut(s)	495
BfuI	GTATCC	1 cut(s)	256
BisI	GCNGC	3 cut(s)	270, 329, 386
BlsI	GCNGC	3 cut(s)	271, 330, 387
Bme18I	GGWCC	1 cut(s)	100
BmeT110I	CYCGRG	2 cut(s)	104, 189
BmgBI	CACGTC	2 cut(s)	313, 343
BmgT120I	GGNCC	3 cut(s)	100, 185, 204
BmiI	GGNNCC	2 cut(s)	102, 186
BmrI	ACTGGG	1 cut(s)	328
BmsI	GCATC	3 cut(s)	366, 418, 468
BmuI	ACTGGG	1 cut(s)	328
BpmI	CTGGAG	6 cut(s)	258, 287, 347, 407, 428, 476
BpuEI	CTTGAG	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	188
BsaXI	ACNNNNNCTCC	2 cut(s)	405, 435
Bse3DI	GCAATG	1 cut(s)	507
BseDI	CCNNGG	1 cut(s)	188
BseGI	GGATG	2 cut(s)	90, 459
BseMI	GCAATG	1 cut(s)	507
BseMII	CTCAG	1 cut(s)	38
BseXI	GCAGC	2 cut(s)	256, 340
Bsh1236I	CGCG	4 cut(s)	285, 374, 404, 434
BshFI	GGCC	2 cut(s)	187, 205
BsiHKCI	CYCGRG	2 cut(s)	104, 189
BsnI	GGCC	2 cut(s)	187, 205
BsoBI	CYCGRG	2 cut(s)	104, 189
Bsp143I	GATC	1 cut(s)	142
BspACI	CCGC	3 cut(s)	53, 385, 451
BspANI	GGCC	2 cut(s)	187, 205
BspCNI	CTCAG	1 cut(s)	39
BspFNI	CGCG	4 cut(s)	285, 374, 404, 434
BspLI	GGNNCC	2 cut(s)	102, 186
BspMI	ACCTGC	1 cut(s)	495
BsrBI	CCGCTC	1 cut(s)	53
BsrDI	GCAATG	1 cut(s)	507
BssECI	CCNNGG	1 cut(s)	188
BssMI	GATC	1 cut(s)	142
Bst4CI	ACNGT	2 cut(s)	28, 172
Bst6I	CTCTTC	1 cut(s)	130
BstAPI	GCANNNNNTGC	1 cut(s)	487
BstDEI	CTNAG	1 cut(s)	47
BstF5I	GGATG	2 cut(s)	90, 459
BstFNI	CGCG	4 cut(s)	285, 374, 404, 434
BstHHI	GCGC	1 cut(s)	374
BstKTI	GATC	1 cut(s)	145
BstMBI	GATC	1 cut(s)	142
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 385, 487
BstUI	CGCG	4 cut(s)	285, 374, 404, 434
BstV1I	GCAGC	2 cut(s)	256, 340
BsuI	GTATCC	1 cut(s)	256
BsuRI	GGCC	2 cut(s)	187, 205
BtgZI	GCGATG	1 cut(s)	389
BtrI	CACGTC	2 cut(s)	313, 343
BtsCI	GGATG	2 cut(s)	90, 459
BtsIMutI	CAGTG	3 cut(s)	72, 329, 500
BveI	ACCTGC	1 cut(s)	495
CfoI	GCGC	1 cut(s)	374
Cfr13I	GGNCC	3 cut(s)	100, 185, 204
CseI	GACGC	2 cut(s)	291, 440
CviJI	RGCY	7 cut(s)	44, 187, 205, 301, 331, 361, 470
CviKI_1	RGCY	7 cut(s)	44, 187, 205, 301, 331, 361, 470
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
Eam1104I	CTCTTC	1 cut(s)	130
EarI	CTCTTC	1 cut(s)	130
Eco47I	GGWCC	1 cut(s)	100
Eco57I	CTGAAG	1 cut(s)	225
Eco88I	CYCGRG	2 cut(s)	104, 189
EcoO109I	RGGNCCY	2 cut(s)	100, 185
FaiI	YATR	1 cut(s)	167
FauI	CCCGC	1 cut(s)	46
Fnu4HI	GCNGC	3 cut(s)	270, 329, 386
FokI	GGATG	2 cut(s)	77, 466
Fsp4HI	GCNGC	3 cut(s)	270, 329, 386
GlaI	GCGC	1 cut(s)	373
GluI	GCNGC	3 cut(s)	270, 329, 386
GsuI	CTGGAG	6 cut(s)	258, 287, 347, 407, 428, 476
HaeIII	GGCC	2 cut(s)	187, 205
HgaI	GACGC	2 cut(s)	291, 440
HhaI	GCGC	1 cut(s)	374
Hin6I	GCGC	1 cut(s)	372
HinP1I	GCGC	1 cut(s)	372
HinfI	GANTC	4 cut(s)	287, 316, 346, 457
HphI	GGTGA	3 cut(s)	282, 311, 341
Hpy188I	TCNGA	7 cut(s)	12, 48, 281, 310, 340, 430, 477
Hpy188III	TCNNGA	2 cut(s)	94, 191
HpyAV	CCTTC	2 cut(s)	79, 91
HpyCH4III	ACNGT	2 cut(s)	28, 172
HpyCH4IV	ACGT	2 cut(s)	312, 342
HpyCH4V	TGCA	4 cut(s)	379, 481, 500, 505
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 385, 487
HpyF3I	CTNAG	1 cut(s)	47
HpySE526I	ACGT	2 cut(s)	312, 342
HspAI	GCGC	1 cut(s)	372
Kzo9I	GATC	1 cut(s)	142
LmnI	GCTCC	5 cut(s)	137, 277, 306, 366, 495
Lsp1109I	GCAGC	2 cut(s)	256, 340
LweI	GCATC	3 cut(s)	366, 418, 468
MaeII	ACGT	2 cut(s)	312, 342
MalI	GATC	1 cut(s)	144
MbiI	CCGCTC	1 cut(s)	53
MboI	GATC	1 cut(s)	142
MboII	GAAGA	4 cut(s)	47, 50, 117, 255
MmeI	TCCRAC	1 cut(s)	318
MnlI	CCTC	5 cut(s)	25, 153, 198, 399, 471
MspA1I	CMGCKG	1 cut(s)	385
MvnI	CGCG	4 cut(s)	285, 374, 404, 434
MwoI	GCNNNNNNNGC	3 cut(s)	50, 385, 487
NdeII	GATC	1 cut(s)	142
NlaIV	GGNNCC	2 cut(s)	102, 186
PfeI	GAWTC	4 cut(s)	287, 316, 346, 457
PkrI	GCNGC	3 cut(s)	271, 330, 387
PpuMI	RGGWCCY	1 cut(s)	100
Psp5II	RGGWCCY	1 cut(s)	100
PspN4I	GGNNCC	2 cut(s)	102, 186
PspPI	GGNCC	3 cut(s)	100, 185, 204
PspPPI	RGGWCCY	1 cut(s)	100
SatI	GCNGC	3 cut(s)	270, 329, 386
Sau3AI	GATC	1 cut(s)	142
Sau96I	GGNCC	3 cut(s)	100, 185, 204
SetI	ASST	6 cut(s)	46, 303, 315, 345, 363, 489
SfaNI	GCATC	3 cut(s)	366, 418, 468
SinI	GGWCC	1 cut(s)	100
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
SsiI	CCGC	3 cut(s)	53, 385, 451
SspI	AATATT	1 cut(s)	139
TaaI	ACNGT	2 cut(s)	28, 172
TaiI	ACGT	2 cut(s)	315, 345
TaqI	TCGA	1 cut(s)	463
TauI	GCSGC	1 cut(s)	388
TfiI	GAWTC	4 cut(s)	287, 316, 346, 457
TscAI	CASTG	3 cut(s)	79, 329, 500
TseI	GCWGC	2 cut(s)	269, 328
TspGWI	ACGGA	1 cut(s)	238
TspRI	CASTG	3 cut(s)	79, 329, 500
VpaK11BI	GGWCC	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.