Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002126.1

Orthogroup ID

OG0002087

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 564

Gene Structure 564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002126.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

tttcaaaattgcttcaagataaaaagtgactcgtcaggtgagacaaaagcaccactgcccccaaaacagaatgatgcaccactggccccaaacgccccaaaacagaacgacacaccagcggccccaaaacagaatgatgtccaacttacgcaattgcagagtcatgctgatgtaatcccctatgaaacagttgaggaagcggcagtggctgctgcctacaagattgccgaagcagaaaacaaatcatttgtggctgcagaagcagtgaaagagtcggagagggtttcacagatgttcgaagacacaaactcagtgctccagttggcagaagagtttcttaagaaatgttcgcaaggtgaagttcttctggttgtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0003697 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0031974 GO:0031981 GO:0042162 GO:0042802 GO:0042803 GO:0043047 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0046983 GO:0070013 GO:0097159 GO:0098847 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

125

Amino Acids

13.58

Weight (kDa)

4.68

Isoelectric Point (pI)

43.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17520 AT1G17520 AT1G17520 AT1G17520 AT1G72740 AT1G72740
fragaria_vesca	FvH4_1g07940 FvH4_1g07940 FvH4_6g34130
malus_domestica	MD02G1083400.v1.1 MD09G1188600.v1.1 MD15G1211100.v1.1
prunus_persica	Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.7G205700_v2.0.a1 Prupe.7G205700_v2.0.a1 Prupe.7G205700_v2.0.a1
pyrus_communis	pycom02g06590 pycom09g10570 pycom15g18710
rosa_chinensis	RchiOBHm_Chr2g0093821 RchiOBHm_Chr2g0144441
rosa_laevigata	RLG00000016439 RLG00000020081
rosa_multiflora	Rmu_co8254463.1_g000001 Rmu_sc0002126.1_g000001 Rmu_sc0003027.1_g000017 Rmu_sc0017523.1_g000002
rosa_roxburghii	Rroxscaffold_2G00101310 Rroxscaffold_2G00147780
rosa_rugosa	Rorug02G0040100 Rorug02G0386600
rosa_samantha	Rh2AG086500 Rh2AG438900 Rh2BG087000 Rh2BG449200 Rh2CG089400 Rh2CG425900 Rh2DG085000 Rh2DG458900
rosa_wichuraiana	Rw2G035910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	119, 200
AflII	CTTAAG	1 cut(s)	338
AgsI	TTSAA	2 cut(s)	5, 16
Alw21I	GWGCWC	1 cut(s)	318
Alw26I	GTCTC	1 cut(s)	35
AlwNI	CAGNNNCTG	1 cut(s)	209
AoxI	GGCC	2 cut(s)	84, 120
ApeKI	GCWGC	3 cut(s)	209, 212, 254
Asp700I	GAANNNNTTC	2 cut(s)	333, 363
AspS9I	GGNCC	2 cut(s)	85, 121
AsuHPI	GGTGA	2 cut(s)	50, 368
AsuII	TTCGAA	1 cut(s)	297
BbsI	GAAGAC	1 cut(s)	306
Bbv12I	GWGCWC	1 cut(s)	318
BbvI	GCAGC	3 cut(s)	196, 199, 241
BcoDI	GTCTC	1 cut(s)	35
BfmI	CTRYAG	1 cut(s)	255
BfrI	CTTAAG	1 cut(s)	338
BisI	GCNGC	5 cut(s)	120, 201, 210, 213, 255
BlsI	GCNGC	5 cut(s)	121, 202, 211, 214, 256
BmgT120I	GGNCC	2 cut(s)	85, 121
BmiI	GGNNCC	2 cut(s)	87, 123
BmsI	GCATC	1 cut(s)	64
BpiI	GAAGAC	1 cut(s)	306
BpmI	CTGGAG	1 cut(s)	302
Bpu14I	TTCGAA	1 cut(s)	297
Bse1I	ACTGG	2 cut(s)	87, 319
BseMII	CTCAG	1 cut(s)	324
BseNI	ACTGG	2 cut(s)	87, 319
BseXI	GCAGC	3 cut(s)	196, 199, 241
BshFI	GGCC	2 cut(s)	86, 122
BsiHKAI	GWGCWC	1 cut(s)	318
BsmAI	GTCTC	1 cut(s)	35
BsnI	GGCC	2 cut(s)	86, 122
Bsp119I	TTCGAA	1 cut(s)	297
Bsp1286I	GDGCHC	1 cut(s)	318
BspACI	CCGC	2 cut(s)	119, 200
BspANI	GGCC	2 cut(s)	86, 122
BspCNI	CTCAG	1 cut(s)	323
BspLI	GGNNCC	2 cut(s)	87, 123
BspMAI	CTGCAG	1 cut(s)	259
BspT104I	TTCGAA	1 cut(s)	297
BspTI	CTTAAG	1 cut(s)	338
BsrI	ACTGG	2 cut(s)	87, 319
Bst4CI	ACNGT	1 cut(s)	190
Bst6I	CTCTTC	1 cut(s)	324
BstAFI	CTTAAG	1 cut(s)	338
BstAPI	GCANNNNNTGC	1 cut(s)	209
BstBI	TTCGAA	1 cut(s)	297
BstDEI	CTNAG	1 cut(s)	310
BstMAI	GTCTC	1 cut(s)	35
BstMWI	GCNNNNNNNGC	5 cut(s)	83, 92, 206, 209, 260
BstSFI	CTRYAG	1 cut(s)	255
BstV1I	GCAGC	3 cut(s)	196, 199, 241
BstV2I	GAAGAC	1 cut(s)	306
BsuRI	GGCC	2 cut(s)	86, 122
BtsI	GCAGTG	3 cut(s)	53, 210, 270
BtsIMutI	CAGTG	5 cut(s)	53, 80, 210, 270, 318
CaiI	CAGNNNCTG	1 cut(s)	209
Cfr13I	GGNCC	2 cut(s)	85, 121
CviAII	CATG	1 cut(s)	164
CviJI	RGCY	4 cut(s)	86, 122, 209, 254
CviKI_1	RGCY	4 cut(s)	86, 122, 209, 254
DdeI	CTNAG	1 cut(s)	310
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
FaeI	CATG	1 cut(s)	167
FaiI	YATR	2 cut(s)	165, 183
FalI	AAGNNNNNCTT	2 cut(s)	321, 353
FatI	CATG	1 cut(s)	163
Fnu4HI	GCNGC	5 cut(s)	120, 201, 210, 213, 255
Fsp4HI	GCNGC	5 cut(s)	120, 201, 210, 213, 255
GluI	GCNGC	5 cut(s)	120, 201, 210, 213, 255
GsuI	CTGGAG	1 cut(s)	302
HaeIII	GGCC	2 cut(s)	86, 122
Hin1II	CATG	1 cut(s)	167
HinfI	GANTC	3 cut(s)	29, 160, 272
HphI	GGTGA	2 cut(s)	50, 368
Hpy188I	TCNGA	1 cut(s)	277
Hpy188III	TCNNGA	1 cut(s)	16
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4V	TGCA	3 cut(s)	77, 157, 257
HpyF10VI	GCNNNNNNNGC	5 cut(s)	83, 92, 206, 209, 260
HpyF3I	CTNAG	1 cut(s)	310
Hsp92II	CATG	1 cut(s)	167
LmnI	GCTCC	1 cut(s)	321
LpnPI	CCDG	5 cut(s)	21, 68, 129, 332, 353
Lsp1109I	GCAGC	3 cut(s)	196, 199, 241
LweI	GCATC	1 cut(s)	64
MaeIII	GTNAC	1 cut(s)	26
MboII	GAAGA	3 cut(s)	311, 341, 356
MfeI	CAATTG	1 cut(s)	152
MhlI	GDGCHC	1 cut(s)	318
MluCI	AATT	2 cut(s)	7, 152
MlyI	GAGTC	3 cut(s)	23, 169, 281
MmeI	TCCRAC	2 cut(s)	166, 255
MnlI	CCTC	2 cut(s)	187, 273
MroXI	GAANNNNTTC	2 cut(s)	333, 363
MseI	TTAA	1 cut(s)	339
MslI	CAYNNNNRTG	1 cut(s)	168
MspA1I	CMGCKG	1 cut(s)	119
MspCI	CTTAAG	1 cut(s)	338
MunI	CAATTG	1 cut(s)	152
MwoI	GCNNNNNNNGC	5 cut(s)	83, 92, 206, 209, 260
NlaIII	CATG	1 cut(s)	167
NlaIV	GGNNCC	2 cut(s)	87, 123
NmuCI	GTSAC	1 cut(s)	26
NspV	TTCGAA	1 cut(s)	297
PdmI	GAANNNNTTC	2 cut(s)	333, 363
PkrI	GCNGC	5 cut(s)	121, 202, 211, 214, 256
PleI	GAGTC	3 cut(s)	23, 168, 280
PpsI	GAGTC	3 cut(s)	23, 168, 280
PspN4I	GGNNCC	2 cut(s)	87, 123
PspPI	GGNCC	2 cut(s)	85, 121
PstI	CTGCAG	1 cut(s)	259
PstNI	CAGNNNCTG	1 cut(s)	209
RseI	CAYNNNNRTG	1 cut(s)	168
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	5 cut(s)	120, 201, 210, 213, 255
Sau96I	GGNCC	2 cut(s)	85, 121
SchI	GAGTC	3 cut(s)	23, 169, 281
SduI	GDGCHC	1 cut(s)	318
SetI	ASST	2 cut(s)	40, 358
SfaNI	GCATC	1 cut(s)	64
SfcI	CTRYAG	1 cut(s)	255
SfuI	TTCGAA	1 cut(s)	297
SgeI	CNNG	9 cut(s)	28, 43, 48, 95, 128, 176, 232, 331, 365
SmiMI	CAYNNNNRTG	1 cut(s)	168
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
Sse9I	AATT	2 cut(s)	7, 152
SsiI	CCGC	2 cut(s)	119, 200
TaaI	ACNGT	1 cut(s)	190
TaqI	TCGA	1 cut(s)	297
TasI	AATT	2 cut(s)	7, 152
TauI	GCSGC	2 cut(s)	122, 203
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	5 cut(s)	60, 87, 210, 270, 318
TseFI	GTSAC	1 cut(s)	26
TseI	GCWGC	3 cut(s)	209, 212, 254
Tsp45I	GTSAC	1 cut(s)	26
TspDTI	ATGAA	1 cut(s)	198
TspRI	CASTG	5 cut(s)	60, 87, 210, 270, 318
Vha464I	CTTAAG	1 cut(s)	338
XmnI	GAANNNNTTC	2 cut(s)	333, 363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.