Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002087

Physical Location & Seq

Genomic Coordinates Forward (+)

3259570 .. 3264510

Gene Structure 4941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G045300.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGGAAACCAAAAGCAAAAATGGACGGCGGAGGAGGAAGAAGGCCTACTGGCCGGAGTTGCAAAGCACGGCCCGGGCAAGTGGAAGAACATTCTCAAAGATCCCGAATTTGCCTCTGTCCTAATACACCGCTCCAATATCGACCTCAAGGATAAGTGGAGGAACTTGAGTGTTAGTACTTCTGGACATGGTTCTAAGGACAGACCAAGGGGTACAAAGGTAAAAAATAGAGTGTCTGCCCAGCACCTTGTTCGTAACTCTGCTCCTACTGCTTCGGTTCGTCCCAATGCATCTCCTGCTTCAGCCCCTCCCAATTCATCTCCTGCTTCAGTTCGTCCGAGTGCATCTCCTGCTTCAGTTTGTCCCAATGCATCTCCTGATGCCATGATGGACGATGCGGTTAATAGTGCACCAGAATTGAAAAGTGCTTCACAGTACGATCCAATGATTTTCCAGGCCCTTTCAACGATGAAAGATATGAATGGATCTGATTTAGGTGCCATTCTTAACTTTATTGAGCAAAGGCATGAGGTACCCGTACCACCAAATTTCAGAAGGTTATTGGGTCCAAGGTTGAGAAGGCTTGTTTCACAAGGAAAACTGGAAAAGGTACAAAATGGCTACAAGTTAAAAAAAGATGCAACATTTGGAACAAAAACACCTACACTTACGCGAAATCAAAGGGATGTTAGGCCCCGGAAATTGCAGAATTCTGGATCAATGACATTTACTGAAACAGTGCAGGATGCAGCTGAAACTGCTGCCCATAAACTTGCAGACGCTGAAGACAAATCCTTTGTGGCTGCTGTTGCAATGAAGGAAGCAGACAGGATTTCAAAGATGACAGAAGACAACGAGTCAATTTTACAGCTAATTGAAGAGATTTATGAACGATGTTCACGTGGTGAAGTTGTCGCCTTGGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000784 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0034641 GO:0042162 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0046677 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098687 GO:0140110 GO:1901360 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

309

Amino Acids

33.69

Weight (kDa)

9.49

Isoelectric Point (pI)

47.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17520 AT1G17520 AT1G17520 AT1G17520 AT1G72740 AT1G72740
fragaria_vesca	FvH4_1g07940 FvH4_1g07940 FvH4_6g34130
malus_domestica	MD02G1083400.v1.1 MD09G1188600.v1.1 MD15G1211100.v1.1
prunus_persica	Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.7G205700_v2.0.a1 Prupe.7G205700_v2.0.a1 Prupe.7G205700_v2.0.a1
pyrus_communis	pycom02g06590 pycom09g10570 pycom15g18710
rosa_chinensis	RchiOBHm_Chr2g0093821 RchiOBHm_Chr2g0144441
rosa_laevigata	RLG00000016439 RLG00000020081
rosa_multiflora	Rmu_co8254463.1_g000001 Rmu_sc0002126.1_g000001 Rmu_sc0003027.1_g000017 Rmu_sc0017523.1_g000002
rosa_roxburghii	Rroxscaffold_2G00101310 Rroxscaffold_2G00147780
rosa_rugosa	Rorug02G0040100 Rorug02G0386600
rosa_samantha	Rh2AG086500 Rh2AG438900 Rh2BG087000 Rh2BG449200 Rh2CG089400 Rh2CG425900 Rh2DG085000 Rh2DG458900
rosa_wichuraiana	Rw2G035910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	532
AccB1I	GGYRCC	2 cut(s)	497, 532
AccBSI	CCGCTC	1 cut(s)	132
AccII	CGCG	1 cut(s)	673
AciI	CCGC	3 cut(s)	29, 130, 398
AclWI	GGATC	4 cut(s)	95, 434, 493, 724
AcoI	YGGCCR	1 cut(s)	51
AcsI	RAATTY	3 cut(s)	107, 547, 709
AcuI	CTGAAG	4 cut(s)	285, 312, 339, 804
AcvI	CACGTG	1 cut(s)	902
AdeI	CACNNNGTG	1 cut(s)	905
AfaI	GTAC	6 cut(s)	178, 214, 437, 534, 540, 612
AgsI	TTSAA	4 cut(s)	421, 465, 837, 878
AhdI	GACNNNNNGTC	1 cut(s)	856
AjnI	CCWGG	1 cut(s)	453
AluBI	AGCT	2 cut(s)	752, 871
AluI	AGCT	2 cut(s)	752, 871
Alw21I	GWGCWC	1 cut(s)	412
Alw44I	GTGCAC	1 cut(s)	408
AlwI	GGATC	4 cut(s)	95, 434, 493, 724
AlwNI	CAGNNNCTG	1 cut(s)	782
Ama87I	CYCGRG	1 cut(s)	73
AoxI	GGCC	5 cut(s)	43, 51, 70, 456, 692
ApaLI	GTGCAC	1 cut(s)	408
ApeKI	GCWGC	3 cut(s)	749, 761, 803
ApoI	RAATTY	3 cut(s)	107, 547, 709
ArsI	GACNNNNNNTTYG	2 cut(s)	779, 811
Asp718I	GGTACC	1 cut(s)	532
AspS9I	GGNCC	4 cut(s)	71, 457, 566, 693
AsuC2I	CCSGG	3 cut(s)	74, 75, 697
AsuHPI	GGTGA	1 cut(s)	917
AvaI	CYCGRG	1 cut(s)	73
AvaII	GGWCC	1 cut(s)	566
BaeGI	GKGCMC	1 cut(s)	412
BaeI	ACNNNNGTAYC	2 cut(s)	204, 237
BanI	GGYRCC	2 cut(s)	497, 532
BarI	GAAGNNNNNNTAC	2 cut(s)	30, 62
BbrPI	CACGTG	1 cut(s)	902
BbsI	GAAGAC	2 cut(s)	792, 855
Bbv12I	GWGCWC	1 cut(s)	412
BbvI	GCAGC	3 cut(s)	748, 761, 790
BccI	CCATC	1 cut(s)	382
BceAI	ACGGC	2 cut(s)	42, 85
BcgI	CGANNNNNNTGC	2 cut(s)	233, 267
BciT130I	CCWGG	1 cut(s)	455
BcnI	CCSGG	3 cut(s)	74, 75, 697
BisI	GCNGC	3 cut(s)	750, 762, 804
BlsI	GCNGC	3 cut(s)	751, 763, 805
BmcAI	AGTACT	1 cut(s)	178
Bme1390I	CCNGG	4 cut(s)	74, 75, 455, 697
Bme18I	GGWCC	1 cut(s)	566
BmeRI	GACNNNNNGTC	1 cut(s)	856
BmeT110I	CYCGRG	1 cut(s)	73
BmgT120I	GGNCC	4 cut(s)	71, 457, 566, 693
BmiI	GGNNCC	4 cut(s)	499, 534, 567, 695
BmrFI	CCNGG	4 cut(s)	74, 75, 455, 697
BmsI	GCATC	7 cut(s)	299, 353, 370, 380, 385, 628, 736
BpiI	GAAGAC	2 cut(s)	792, 855
BplI	GAGNNNNNCTC	2 cut(s)	331, 363
BpuEI	CTTGAG	2 cut(s)	131, 187
BpuMI	CCSGG	3 cut(s)	74, 75, 697
BsaAI	YACGTR	1 cut(s)	902
BsaJI	CCNNGG	5 cut(s)	73, 206, 569, 695, 918
Bse1I	ACTGG	2 cut(s)	54, 606
Bse3DI	GCAATG	1 cut(s)	819
BseBI	CCWGG	1 cut(s)	455
BseDI	CCNNGG	5 cut(s)	73, 206, 569, 695, 918
BseGI	GGATG	2 cut(s)	691, 751
BseMI	GCAATG	1 cut(s)	819
BseNI	ACTGG	2 cut(s)	54, 606
BseRI	GAGGAG	1 cut(s)	47
BseSI	GKGCMC	1 cut(s)	412
BseXI	GCAGC	3 cut(s)	748, 761, 790
BseYI	CCCAGC	1 cut(s)	240
BsgI	GTGCAG	1 cut(s)	761
Bsh1236I	CGCG	1 cut(s)	673
BshFI	GGCC	5 cut(s)	45, 53, 72, 458, 694
BshNI	GGYRCC	2 cut(s)	497, 532
BsiHKAI	GWGCWC	1 cut(s)	412
BsiHKCI	CYCGRG	1 cut(s)	73
BsiSI	CCGG	3 cut(s)	54, 74, 697
BslFI	GGGAC	2 cut(s)	267, 348
BsmFI	GGGAC	2 cut(s)	267, 348
BsnI	GGCC	5 cut(s)	45, 53, 72, 458, 694
BsoBI	CYCGRG	1 cut(s)	73
Bsp1286I	GDGCHC	1 cut(s)	412
Bsp143I	GATC	4 cut(s)	100, 439, 485, 716
BspACI	CCGC	3 cut(s)	29, 130, 398
BspANI	GGCC	5 cut(s)	45, 53, 72, 458, 694
BspFNI	CGCG	1 cut(s)	673
BspLI	GGNNCC	4 cut(s)	499, 534, 567, 695
BspPI	GGATC	4 cut(s)	95, 434, 493, 724
BspT107I	GGYRCC	2 cut(s)	497, 532
BsrBI	CCGCTC	1 cut(s)	132
BsrDI	GCAATG	1 cut(s)	819
BsrI	ACTGG	2 cut(s)	54, 606
BssECI	CCNNGG	5 cut(s)	73, 206, 569, 695, 918
BssMI	GATC	4 cut(s)	100, 439, 485, 716
BssT1I	CCWWGG	3 cut(s)	206, 569, 918
Bst2UI	CCWGG	1 cut(s)	455
Bst4CI	ACNGT	2 cut(s)	435, 739
Bst6I	CTCTTC	1 cut(s)	873
BstAPI	GCANNNNNTGC	2 cut(s)	296, 350
BstBAI	YACGTR	1 cut(s)	902
BstDEI	CTNAG	1 cut(s)	195
BstF5I	GGATG	2 cut(s)	691, 751
BstFNI	CGCG	1 cut(s)	673
BstKTI	GATC	4 cut(s)	103, 442, 488, 719
BstMBI	GATC	4 cut(s)	100, 439, 485, 716
BstMWI	GCNNNNNNNGC	6 cut(s)	59, 269, 296, 350, 758, 809
BstNI	CCWGG	1 cut(s)	455
BstSCI	CCNGG	4 cut(s)	72, 73, 453, 695
BstSLI	GKGCMC	1 cut(s)	412
BstUI	CGCG	1 cut(s)	673
BstV1I	GCAGC	3 cut(s)	748, 761, 790
BstV2I	GAAGAC	2 cut(s)	792, 855
BstX2I	RGATCY	2 cut(s)	100, 485
BstYI	RGATCY	2 cut(s)	100, 485
BsuRI	GGCC	5 cut(s)	45, 53, 72, 458, 694
BtsCI	GGATG	2 cut(s)	691, 751
BtsIMutI	CAGTG	1 cut(s)	744
CaiI	CAGNNNCTG	1 cut(s)	782
Cfr13I	GGNCC	4 cut(s)	71, 457, 566, 693
Cfr9I	CCCGGG	1 cut(s)	73
CseI	GACGC	1 cut(s)	788
Csp6I	GTAC	6 cut(s)	177, 213, 436, 533, 539, 611
CviAII	CATG	3 cut(s)	188, 385, 527
CviQI	GTAC	6 cut(s)	177, 213, 436, 533, 539, 611
DdeI	CTNAG	1 cut(s)	195
DpnI	GATC	4 cut(s)	102, 441, 487, 718
DpnII	GATC	4 cut(s)	100, 439, 485, 716
DraIII	CACNNNGTG	1 cut(s)	905
DriI	GACNNNNNGTC	1 cut(s)	856
EaeI	YGGCCR	1 cut(s)	51
Eam1104I	CTCTTC	1 cut(s)	873
Eam1105I	GACNNNNNGTC	1 cut(s)	856
EarI	CTCTTC	1 cut(s)	873
EciI	GGCGGA	1 cut(s)	44
Eco130I	CCWWGG	3 cut(s)	206, 569, 918
Eco147I	AGGCCT	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	566
Eco57I	CTGAAG	4 cut(s)	285, 312, 339, 804
Eco72I	CACGTG	1 cut(s)	902
Eco88I	CYCGRG	1 cut(s)	73
EcoO109I	RGGNCCY	2 cut(s)	457, 693
EcoRI	GAATTC	1 cut(s)	709
EcoRII	CCWGG	1 cut(s)	453
EcoT14I	CCWWGG	3 cut(s)	206, 569, 918
EcoT22I	ATGCAT	2 cut(s)	292, 373
ErhI	CCWWGG	3 cut(s)	206, 569, 918
FaeI	CATG	3 cut(s)	191, 388, 530
FaiI	YATR	6 cut(s)	189, 386, 479, 528, 768, 888
FaqI	GGGAC	2 cut(s)	267, 348
FatI	CATG	3 cut(s)	187, 384, 526
Fnu4HI	GCNGC	3 cut(s)	750, 762, 804
FokI	GGATG	2 cut(s)	698, 758
Fsp4HI	GCNGC	3 cut(s)	750, 762, 804
GluI	GCNGC	3 cut(s)	750, 762, 804
GsaI	CCCAGC	1 cut(s)	244
HaeIII	GGCC	5 cut(s)	45, 53, 72, 458, 694
HapII	CCGG	3 cut(s)	54, 74, 697
HgaI	GACGC	1 cut(s)	788
Hin1II	CATG	3 cut(s)	191, 388, 530
HinfI	GANTC	1 cut(s)	857
HpaII	CCGG	3 cut(s)	54, 74, 697
HphI	GGTGA	1 cut(s)	917
Hpy166II	GTNNAC	2 cut(s)	410, 899
Hpy188I	TCNGA	3 cut(s)	339, 490, 554
Hpy188III	TCNNGA	4 cut(s)	104, 183, 377, 714
Hpy8I	GTNNAC	2 cut(s)	410, 899
HpyAV	CCTTC	4 cut(s)	35, 549, 573, 811
HpyCH4III	ACNGT	2 cut(s)	435, 739
HpyCH4IV	ACGT	1 cut(s)	901
HpyF10VI	GCNNNNNNNGC	6 cut(s)	59, 269, 296, 350, 758, 809
HpyF3I	CTNAG	1 cut(s)	195
HpySE526I	ACGT	1 cut(s)	901
Hsp92II	CATG	3 cut(s)	191, 388, 530
KpnI	GGTACC	1 cut(s)	536
Kzo9I	GATC	4 cut(s)	100, 439, 485, 716
LmnI	GCTCC	2 cut(s)	137, 268
Lsp1109I	GCAGC	3 cut(s)	748, 761, 790
LweI	GCATC	7 cut(s)	299, 353, 370, 380, 385, 628, 736
MaeII	ACGT	1 cut(s)	901
MaeIII	GTNAC	1 cut(s)	254
MalI	GATC	4 cut(s)	102, 441, 487, 718
MbiI	CCGCTC	1 cut(s)	132
MboI	GATC	4 cut(s)	100, 439, 485, 716
MboII	GAAGA	5 cut(s)	50, 97, 797, 860, 890
MflI	RGATCY	2 cut(s)	100, 485
MhlI	GDGCHC	1 cut(s)	412
MluCI	AATT	8 cut(s)	107, 313, 416, 547, 701, 709, 861, 873
MlyI	GAGTC	1 cut(s)	866
MnlI	CCTC	7 cut(s)	25, 28, 124, 153, 155, 318, 523
Mph1103I	ATGCAT	2 cut(s)	292, 373
MseI	TTAA	3 cut(s)	402, 507, 629
MspA1I	CMGCKG	1 cut(s)	752
MspI	CCGG	3 cut(s)	54, 74, 697
MspR9I	CCNGG	4 cut(s)	74, 75, 455, 697
MvaI	CCWGG	1 cut(s)	455
MvnI	CGCG	1 cut(s)	673
MwoI	GCNNNNNNNGC	6 cut(s)	59, 269, 296, 350, 758, 809
NciI	CCSGG	3 cut(s)	74, 75, 697
NdeII	GATC	4 cut(s)	100, 439, 485, 716
NlaIII	CATG	3 cut(s)	191, 388, 530
NlaIV	GGNNCC	4 cut(s)	499, 534, 567, 695
NsiI	ATGCAT	2 cut(s)	292, 373
PceI	AGGCCT	1 cut(s)	45
PcsI	WCGNNNNNNNCGW	1 cut(s)	898
PkrI	GCNGC	3 cut(s)	751, 763, 805
PleI	GAGTC	1 cut(s)	865
PmaCI	CACGTG	1 cut(s)	902
PmlI	CACGTG	1 cut(s)	902
PpsI	GAGTC	1 cut(s)	865
Ppu21I	YACGTR	1 cut(s)	902
Psp6I	CCWGG	1 cut(s)	453
PspCI	CACGTG	1 cut(s)	902
PspFI	CCCAGC	1 cut(s)	240
PspGI	CCWGG	1 cut(s)	453
PspN4I	GGNNCC	4 cut(s)	499, 534, 567, 695
PspPI	GGNCC	4 cut(s)	71, 457, 566, 693
PstNI	CAGNNNCTG	1 cut(s)	782
PsuI	RGATCY	2 cut(s)	100, 485
PvuII	CAGCTG	1 cut(s)	752
RsaI	GTAC	6 cut(s)	178, 214, 437, 534, 540, 612
RsaNI	GTAC	6 cut(s)	177, 213, 436, 533, 539, 611
SaqAI	TTAA	3 cut(s)	402, 507, 629
SatI	GCNGC	3 cut(s)	750, 762, 804
Sau3AI	GATC	4 cut(s)	100, 439, 485, 716
Sau96I	GGNCC	4 cut(s)	71, 457, 566, 693
ScaI	AGTACT	1 cut(s)	178
SchI	GAGTC	1 cut(s)	866
ScrFI	CCNGG	4 cut(s)	74, 75, 455, 697
SduI	GDGCHC	1 cut(s)	412
SfaNI	GCATC	7 cut(s)	299, 353, 370, 380, 385, 628, 736
SinI	GGWCC	1 cut(s)	566
SmaI	CCCGGG	1 cut(s)	75
SmlI	CTYRAG	2 cut(s)	146, 166
SmoI	CTYRAG	2 cut(s)	146, 166
SrfI	GCCCGGGC	1 cut(s)	75
Sse9I	AATT	8 cut(s)	107, 313, 416, 547, 701, 709, 861, 873
SseBI	AGGCCT	1 cut(s)	45
SsiI	CCGC	3 cut(s)	29, 130, 398
StuI	AGGCCT	1 cut(s)	45
StyD4I	CCNGG	4 cut(s)	72, 73, 453, 695
StyI	CCWWGG	3 cut(s)	206, 569, 918
TaaI	ACNGT	2 cut(s)	435, 739
TaiI	ACGT	1 cut(s)	904
TaqI	TCGA	1 cut(s)	141
TasI	AATT	8 cut(s)	107, 313, 416, 547, 701, 709, 861, 873
TatI	WGTACW	1 cut(s)	176
Tru1I	TTAA	3 cut(s)	402, 507, 629
Tru9I	TTAA	3 cut(s)	402, 507, 629
TscAI	CASTG	1 cut(s)	744
TseI	GCWGC	3 cut(s)	749, 761, 803
TspDTI	ATGAA	5 cut(s)	306, 485, 494, 830, 903
TspMI	CCCGGG	1 cut(s)	73
TspRI	CASTG	1 cut(s)	744
VneI	GTGCAC	1 cut(s)	408
VpaK11BI	GGWCC	1 cut(s)	566
XapI	RAATTY	3 cut(s)	107, 547, 709
XmaI	CCCGGG	1 cut(s)	73
ZrmI	AGTACT	1 cut(s)	178
Zsp2I	ATGCAT	2 cut(s)	292, 373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.