Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002087

Physical Location & Seq

Genomic Coordinates Forward (+)

23307516 .. 23310775

Gene Structure 3260 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00101310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGTCGTCTTCTTCCCTTCGGAAACCGAAACGAATTTCCGAGAGAGAGAAAGAGGGTTTCAGACAGTCGCACAGAAAGCTCGGAGTGAAAGGTAGAGATAGAAGCAAGGGTAGAATGGGAAACCATAAGCAAAAGTGGACGTCGGAGGAGGAAGATGCTCTAGTCGCCGGAGTTGCAAAGCACGGCGCCGGCAAATGGAAGAACATCCTCATCGATCCAGAATTCGCCCAATCTCTCATTCTCCGATCCAACATTGACCTCAAGGATAAATGGAGGAACTTGAGTCCTAGTCTTGCACTTGCACAAGTTACGCAGAAGAAAAGGAAGAATTCAAAGATAAAGAATTCAGTTCGTTACTCTGCACCTGTGCTAGCACTTCCTAGTGGAACATCTCCTGATGCTGTCATGGATGATTCCAACACTGAAGAACGGTACAACGCATTGATTTTTGAGGCTCTTTTAACAATGAAAGATCCGAATGGATCTGATGTGGATGCCATTCGTAACTTTATTCAGGTTTTTATTGGAAAAGCAAATAGTCCTATATCTGCTCTTTATATATTGAAATCTGCGCAAAGGGAAGAGGAGCCCATTCCACATAATTTCAAAAGGTTAGTGGGTGCAAGGTTGAGAAGTCTTGTTTCACTAGGAAAACTTGAAAAGACTAGAAATGGCTTCAAGATCAAAGTTTTAGGAACAAAAACACCTACGGGGTTGGCAACTTCTACTGAAACAGAAGATGATGCTGTTCATGTCGCTGCCTATACAATTGCTGATGCTGAAAACAAATCATTCTTGGCTGCTGAAGCAGTGAAGGAGGCAGAGAGAGTTTCAAAGATAGCAGAAGAGACCGAGTCTATGCTACTGCTAGTGAAAGAGATCAATGAACATTGTTCATGTGGTGAAGTTGTCCACTTGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000784 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0034641 GO:0042162 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0046677 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098687 GO:0140110 GO:1901360 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

307

Amino Acids

34.03

Weight (kDa)

9.5

Isoelectric Point (pI)

43.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	43 - 93	1.6e-07	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	46 - 101	3.3e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17520 AT1G17520 AT1G17520 AT1G17520 AT1G72740 AT1G72740
fragaria_vesca	FvH4_1g07940 FvH4_1g07940 FvH4_6g34130
malus_domestica	MD02G1083400.v1.1 MD09G1188600.v1.1 MD15G1211100.v1.1
prunus_persica	Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.7G205700_v2.0.a1 Prupe.7G205700_v2.0.a1 Prupe.7G205700_v2.0.a1
pyrus_communis	pycom02g06590 pycom09g10570 pycom15g18710
rosa_chinensis	RchiOBHm_Chr2g0093821 RchiOBHm_Chr2g0144441
rosa_laevigata	RLG00000016439 RLG00000020081
rosa_multiflora	Rmu_co8254463.1_g000001 Rmu_sc0002126.1_g000001 Rmu_sc0003027.1_g000017 Rmu_sc0017523.1_g000002
rosa_roxburghii	Rroxscaffold_2G00101310 Rroxscaffold_2G00147780
rosa_rugosa	Rorug02G0040100 Rorug02G0386600
rosa_samantha	Rh2AG086500 Rh2AG438900 Rh2BG087000 Rh2BG449200 Rh2CG089400 Rh2CG425900 Rh2DG085000 Rh2DG458900
rosa_wichuraiana	Rw2G035910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	143
Acc16I	TGCGCA	1 cut(s)	573
AccB1I	GGYRCC	1 cut(s)	185
AclWI	GGATC	4 cut(s)	209, 240, 467, 490
AcsI	RAATTY	4 cut(s)	33, 221, 328, 343
AcuI	CTGAAG	2 cut(s)	444, 825
AcyI	GRCGYC	2 cut(s)	140, 186
AfaI	GTAC	1 cut(s)	434
AfiI	CCNNNNNNNGG	1 cut(s)	195
AgsI	TTSAA	6 cut(s)	333, 565, 607, 659, 679, 834
AjuI	GAANNNNNNNTTGG	2 cut(s)	222, 254
AluBI	AGCT	1 cut(s)	79
AluI	AGCT	1 cut(s)	79
Alw26I	GTCTC	1 cut(s)	842
AlwI	GGATC	4 cut(s)	209, 240, 467, 490
ApeKI	GCWGC	2 cut(s)	758, 800
ApoI	RAATTY	4 cut(s)	33, 221, 328, 343
AspLEI	GCGC	2 cut(s)	188, 574
AsuHPI	GGTGA	1 cut(s)	914
AsuNHI	GCTAGC	1 cut(s)	370
BanI	GGYRCC	1 cut(s)	185
BanII	GRGCYC	1 cut(s)	591
BbvI	GCAGC	2 cut(s)	745, 787
BceAI	ACGGC	1 cut(s)	199
BcoDI	GTCTC	1 cut(s)	842
BfaI	CTAG	7 cut(s)	161, 288, 371, 381, 647, 666, 869
BfoI	RGCGCY	1 cut(s)	189
BisI	GCNGC	2 cut(s)	759, 801
BlsI	GCNGC	2 cut(s)	760, 802
BmiI	GGNNCC	2 cut(s)	187, 588
BmsI	GCATC	5 cut(s)	145, 388, 484, 733, 766
BmtI	GCTAGC	1 cut(s)	374
BpuEI	CTTGAG	2 cut(s)	245, 301
Bsa29I	ATCGAT	1 cut(s)	213
BsaHI	GRCGYC	2 cut(s)	140, 186
BsaI	GGTCTC	1 cut(s)	842
Bsc4I	CCNNNNNNNGG	1 cut(s)	195
Bse118I	RCCGGY	1 cut(s)	188
BseCI	ATCGAT	1 cut(s)	213
BseGI	GGATG	3 cut(s)	204, 415, 499
BseLI	CCNNNNNNNGG	1 cut(s)	195
BseRI	GAGGAG	2 cut(s)	161, 599
BseXI	GCAGC	2 cut(s)	745, 787
BsgI	GTGCAG	1 cut(s)	345
BshNI	GGYRCC	1 cut(s)	185
BshVI	ATCGAT	1 cut(s)	213
BsiSI	CCGG	2 cut(s)	168, 189
BslI	CCNNNNNNNGG	1 cut(s)	195
BsmAI	GTCTC	1 cut(s)	842
Bso31I	GGTCTC	1 cut(s)	842
Bsp1286I	GDGCHC	1 cut(s)	591
Bsp143I	GATC	6 cut(s)	214, 245, 472, 482, 681, 879
BspDI	ATCGAT	1 cut(s)	213
BspLI	GGNNCC	2 cut(s)	187, 588
BspOI	GCTAGC	1 cut(s)	374
BspPI	GGATC	4 cut(s)	209, 240, 467, 490
BspT107I	GGYRCC	1 cut(s)	185
BspTNI	GGTCTC	1 cut(s)	842
BsrFI	RCCGGY	1 cut(s)	188
BssAI	RCCGGY	1 cut(s)	188
BssMI	GATC	6 cut(s)	214, 245, 472, 482, 681, 879
BssNI	GRCGYC	2 cut(s)	140, 186
Bst4CI	ACNGT	2 cut(s)	66, 432
Bst6I	CTCTTC	2 cut(s)	576, 840
BstACI	GRCGYC	2 cut(s)	140, 186
BstC8I	GCNNGC	2 cut(s)	190, 372
BstDEI	CTNAG	1 cut(s)	921
BstF5I	GGATG	3 cut(s)	204, 415, 499
BstH2I	RGCGCY	1 cut(s)	189
BstHHI	GCGC	2 cut(s)	188, 574
BstKTI	GATC	6 cut(s)	217, 248, 475, 485, 684, 882
BstMAI	GTCTC	1 cut(s)	842
BstMBI	GATC	6 cut(s)	214, 245, 472, 482, 681, 879
BstMWI	GCNNNNNNNGC	4 cut(s)	76, 164, 173, 806
BstV1I	GCAGC	2 cut(s)	745, 787
BstX2I	RGATCY	2 cut(s)	472, 482
BstYI	RGATCY	2 cut(s)	472, 482
Bsu15I	ATCGAT	1 cut(s)	213
BsuTUI	ATCGAT	1 cut(s)	213
BtsCI	GGATG	3 cut(s)	204, 415, 499
BtsI	GCAGTG	1 cut(s)	816
BtsIMutI	CAGTG	2 cut(s)	420, 816
Cac8I	GCNNGC	2 cut(s)	190, 372
CfoI	GCGC	2 cut(s)	188, 574
Cfr10I	RCCGGY	1 cut(s)	188
ClaI	ATCGAT	1 cut(s)	213
Csp6I	GTAC	1 cut(s)	433
CviAII	CATG	3 cut(s)	406, 752, 897
CviJI	RGCY	6 cut(s)	79, 455, 589, 675, 800, 920
CviKI_1	RGCY	6 cut(s)	79, 455, 589, 675, 800, 920
CviQI	GTAC	1 cut(s)	433
DdeI	CTNAG	1 cut(s)	921
DinI	GGCGCC	1 cut(s)	187
DpnI	GATC	6 cut(s)	216, 247, 474, 484, 683, 881
DpnII	GATC	6 cut(s)	214, 245, 472, 482, 681, 879
Eam1104I	CTCTTC	2 cut(s)	576, 840
EarI	CTCTTC	2 cut(s)	576, 840
Eco24I	GRGCYC	1 cut(s)	591
Eco31I	GGTCTC	1 cut(s)	842
Eco57I	CTGAAG	2 cut(s)	444, 825
EcoRI	GAATTC	3 cut(s)	221, 328, 343
EcoT38I	GRGCYC	1 cut(s)	591
EgeI	GGCGCC	1 cut(s)	187
EheI	GGCGCC	1 cut(s)	187
FaeI	CATG	3 cut(s)	409, 755, 900
FatI	CATG	3 cut(s)	405, 751, 896
Fnu4HI	GCNGC	2 cut(s)	759, 801
FokI	GGATG	3 cut(s)	191, 422, 506
FriOI	GRGCYC	1 cut(s)	591
Fsp4HI	GCNGC	2 cut(s)	759, 801
FspBI	CTAG	7 cut(s)	161, 288, 371, 381, 647, 666, 869
FspI	TGCGCA	1 cut(s)	573
GlaI	GCGC	2 cut(s)	187, 573
GluI	GCNGC	2 cut(s)	759, 801
HaeII	RGCGCY	1 cut(s)	189
HapII	CCGG	2 cut(s)	168, 189
HhaI	GCGC	2 cut(s)	188, 574
Hin1I	GRCGYC	2 cut(s)	140, 186
Hin1II	CATG	3 cut(s)	409, 755, 900
Hin6I	GCGC	2 cut(s)	186, 572
HinP1I	GCGC	2 cut(s)	186, 572
HinfI	GANTC	3 cut(s)	283, 413, 854
HpaII	CCGG	2 cut(s)	168, 189
HphI	GGTGA	1 cut(s)	914
Hpy166II	GTNNAC	2 cut(s)	138, 913
Hpy188I	TCNGA	8 cut(s)	21, 40, 62, 83, 145, 245, 477, 487
Hpy188III	TCNNGA	3 cut(s)	218, 395, 679
Hpy8I	GTNNAC	2 cut(s)	138, 913
Hpy99I	CGWCG	1 cut(s)	145
HpyAV	CCTTC	2 cut(s)	26, 808
HpyCH4III	ACNGT	2 cut(s)	66, 432
HpyCH4IV	ACGT	1 cut(s)	140
HpyCH4V	TGCA	5 cut(s)	176, 296, 302, 362, 623
HpyF10VI	GCNNNNNNNGC	4 cut(s)	76, 164, 173, 806
HpyF3I	CTNAG	1 cut(s)	921
HpySE526I	ACGT	1 cut(s)	140
Hsp92I	GRCGYC	2 cut(s)	140, 186
Hsp92II	CATG	3 cut(s)	409, 755, 900
HspAI	GCGC	2 cut(s)	186, 572
KasI	GGCGCC	1 cut(s)	185
KroI	GCCGGC	1 cut(s)	188
KroNI	GCCGGC	1 cut(s)	190
Kzo9I	GATC	6 cut(s)	214, 245, 472, 482, 681, 879
LmnI	GCTCC	1 cut(s)	586
LpnPI	CCDG	6 cut(s)	181, 202, 231, 378, 408, 500
Lsp1109I	GCAGC	2 cut(s)	745, 787
LweI	GCATC	5 cut(s)	145, 388, 484, 733, 766
MaeI	CTAG	7 cut(s)	161, 288, 371, 381, 647, 666, 869
MaeII	ACGT	1 cut(s)	140
MaeIII	GTNAC	3 cut(s)	307, 353, 503
MalI	GATC	6 cut(s)	216, 247, 474, 484, 683, 881
MboI	GATC	6 cut(s)	214, 245, 472, 482, 681, 879
MboII	GAAGA	9 cut(s)	3, 164, 211, 328, 337, 437, 593, 749, 857
MfeI	CAATTG	1 cut(s)	768
MflI	RGATCY	2 cut(s)	472, 482
MhlI	GDGCHC	1 cut(s)	591
MluCI	AATT	6 cut(s)	33, 221, 328, 343, 601, 768
Mly113I	GGCGCC	1 cut(s)	186
MlyI	GAGTC	2 cut(s)	292, 863
MmeI	TCCRAC	3 cut(s)	123, 273, 441
MnlI	CCTC	9 cut(s)	46, 139, 142, 218, 267, 269, 445, 577, 811
MroNI	GCCGGC	1 cut(s)	188
MseI	TTAA	1 cut(s)	461
MspI	CCGG	2 cut(s)	168, 189
MunI	CAATTG	1 cut(s)	768
MwoI	GCNNNNNNNGC	4 cut(s)	76, 164, 173, 806
NaeI	GCCGGC	1 cut(s)	190
NarI	GGCGCC	1 cut(s)	186
NdeII	GATC	6 cut(s)	214, 245, 472, 482, 681, 879
NgoMIV	GCCGGC	1 cut(s)	188
NheI	GCTAGC	1 cut(s)	370
NlaIII	CATG	3 cut(s)	409, 755, 900
NlaIV	GGNNCC	2 cut(s)	187, 588
NsbI	TGCGCA	1 cut(s)	573
PdiI	GCCGGC	1 cut(s)	190
PfeI	GAWTC	1 cut(s)	413
PflFI	GACNNNGTC	1 cut(s)	853
PkrI	GCNGC	2 cut(s)	760, 802
PleI	GAGTC	2 cut(s)	291, 862
PluTI	GGCGCC	1 cut(s)	189
PpsI	GAGTC	2 cut(s)	291, 862
PspN4I	GGNNCC	2 cut(s)	187, 588
PsuI	RGATCY	2 cut(s)	472, 482
PsyI	GACNNNGTC	1 cut(s)	853
RsaI	GTAC	1 cut(s)	434
RsaNI	GTAC	1 cut(s)	433
SaqAI	TTAA	1 cut(s)	461
SatI	GCNGC	2 cut(s)	759, 801
Sau3AI	GATC	6 cut(s)	214, 245, 472, 482, 681, 879
SchI	GAGTC	2 cut(s)	292, 863
SduI	GDGCHC	1 cut(s)	591
SetI	ASST	9 cut(s)	81, 94, 143, 261, 367, 519, 614, 629, 709
SfaNI	GCATC	5 cut(s)	145, 388, 484, 733, 766
SfoI	GGCGCC	1 cut(s)	187
SmlI	CTYRAG	2 cut(s)	260, 280
SmoI	CTYRAG	2 cut(s)	260, 280
Sse9I	AATT	6 cut(s)	33, 221, 328, 343, 601, 768
SspDI	GGCGCC	1 cut(s)	185
SspMI	CTAG	7 cut(s)	161, 288, 371, 381, 647, 666, 869
TaaI	ACNGT	2 cut(s)	66, 432
TaiI	ACGT	1 cut(s)	143
TaqI	TCGA	1 cut(s)	213
TaqII	GACCGA	1 cut(s)	866
TasI	AATT	6 cut(s)	33, 221, 328, 343, 601, 768
TfiI	GAWTC	1 cut(s)	413
Tru1I	TTAA	1 cut(s)	461
Tru9I	TTAA	1 cut(s)	461
TscAI	CASTG	2 cut(s)	427, 816
TseI	GCWGC	2 cut(s)	758, 800
TspDTI	ATGAA	4 cut(s)	482, 740, 885, 900
TspRI	CASTG	2 cut(s)	427, 816
Tth111I	GACNNNGTC	1 cut(s)	853
XapI	RAATTY	4 cut(s)	33, 221, 328, 343
XspI	CTAG	7 cut(s)	161, 288, 371, 381, 647, 666, 869
ZraI	GACGTC	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.